Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005893 Camellia sinensis var. sinensis HOM05D002561 ORTHO05D008175 7.2e-46 186.8 89 100.0
CSS0025846 Camellia sinensis var. sinensis HOM05D002561 ORTHO05D008175 2.7e-45 184.9 89 98.9
CSS0039896 Camellia sinensis var. sinensis HOM05D002561 ORTHO05D008175 2.8e-34 148.3 93 82.8
CSS0012531 Camellia sinensis var. sinensis HOM05D002561 ORTHO05D008175 3.7e-34 147.9 93 82.8
ATR0665G429 Amborella trichopoda HOM05D002561 ORTHO05D008175 7.7e-32 140.2 84 85.7
CSS0039568 Camellia sinensis var. sinensis HOM05D002561 ORTHO05D008175 7.7e-32 140.2 84 85.7
Duzib093G1612 Durio zibethinus HOM05D002561 ORTHO05D008175 2.2e-31 138.7 84 83.3
TWI56G0768 Tripterygium wilfordii HOM05D002561 ORTHO05D008175 2.2e-31 138.7 84 84.5
PGR031G3600 Punica granatum HOM05D002561 ORTHO05D008175 2.9e-31 138.3 88 80.7
Gohir.A05G190200 Gossypium hirsutum HOM05D002561 ORTHO05D008175 3.8e-31 137.9 84 83.3
Gohir.D05G193600 Gossypium hirsutum HOM05D002561 ORTHO05D008175 3.8e-31 137.9 84 83.3
Gorai.009G198600 Gossypium raimondii HOM05D002561 ORTHO05D008175 3.8e-31 137.9 84 83.3
Nn5g29715 Nelumbo nucifera HOM05D002561 ORTHO05D008175 3.8e-31 137.9 84 83.3
TAR381G1262 Trochodendron aralioides HOM05D002561 ORTHO05D008175 3.8e-31 137.9 84 83.3
Atru.chr13.400 Acer truncatum HOM05D002561 ORTHO05D008175 5.0e-31 137.5 84 83.3
Cfa013881 Carpinus fangiana HOM05D002561 ORTHO05D008175 5.0e-31 137.5 84 83.3
Ciclev10000772m.g Citrus clementina HOM05D002561 ORTHO05D008175 5.0e-31 137.5 84 83.3
GSVIVG01009778001 Vitis vinifera HOM05D002561 ORTHO05D008175 6.5e-31 137.1 86 81.4
CiPaw.08G060900 Carya illinoinensis HOM05D002561 ORTHO05D008175 8.5e-31 136.7 84 82.1
Thecc.08G034100 Theobroma cacao HOM05D002561 ORTHO05D008175 8.5e-31 136.7 84 82.1
CANSAT25G1258 Cannabis sativa HOM05D002561 ORTHO05D008175 1.1e-30 136.3 84 82.1
FvH4_2g39280 Fragaria vesca HOM05D002561 ORTHO05D008175 1.1e-30 136.3 84 82.1
FAN15G1503 Fragaria x ananassa HOM05D002561 ORTHO05D008175 1.1e-30 136.3 84 82.1
FAN20G1367 Fragaria x ananassa HOM05D002561 ORTHO05D008175 1.1e-30 136.3 84 82.1
FAN26G2864 Fragaria x ananassa HOM05D002561 ORTHO05D008175 1.1e-30 136.3 84 82.1
FAN27G3197 Fragaria x ananassa HOM05D002561 ORTHO05D008175 1.1e-30 136.3 84 82.1
Prupe.1G373900 Prunus persica HOM05D002561 ORTHO05D008175 1.1e-30 136.3 84 82.1
RcHm_v2.0_Chr6g0301721 Rosa chinensis HOM05D002561 ORTHO05D008175 1.1e-30 136.3 84 82.1
MD15G1022100 Malus domestica HOM05D002561 ORTHO05D008175 1.5e-30 136.0 84 82.1
Potri.002G031100 Populus trichocarpa HOM05D002561 ORTHO05D008175 1.5e-30 136.0 84 82.1
Actinidia15362 Actinidia chinensis HOM05D002561 ORTHO05D008175 1.9e-30 135.6 93 75.3
CDE06G0545 Ceratophyllum demersum HOM05D002561 ORTHO05D008175 1.9e-30 135.6 84 82.1
Eucgr.F01859 Eucalyptus grandis HOM05D002561 ORTHO05D008175 1.9e-30 135.6 84 82.1
AL8G34040 Arabidopsis lyrata HOM05D002561 ORTHO05D008175 2.5e-30 135.2 84 81.0
AT5G57960 Arabidopsis thaliana HOM05D002561 ORTHO05D008175 2.5e-30 135.2 84 81.0
BcaB05g22389 Brassica carinata HOM05D002561 ORTHO05D008175 2.5e-30 135.2 84 81.0
A02p08080 Brassica napus HOM05D002561 ORTHO05D008175 2.5e-30 135.2 84 81.0
C02p13730 Brassica napus HOM05D002561 ORTHO05D008175 2.5e-30 135.2 84 81.0
BolC2t07491H Brassica oleracea HOM05D002561 ORTHO05D008175 2.5e-30 135.2 84 81.0
BraA02t05881Z Brassica rapa HOM05D002561 ORTHO05D008175 2.5e-30 135.2 84 81.0
MELO3C003793.2 Cucumis melo HOM05D002561 ORTHO05D008175 2.5e-30 135.2 84 81.0
CsaV3_3G045490 Cucumis sativus L. HOM05D002561 ORTHO05D008175 2.5e-30 135.2 84 81.0
Thhalv10013185m.g Eutrema salsugineum HOM05D002561 ORTHO05D008175 2.5e-30 135.2 84 81.0
Sed0027585 Sechium edule HOM05D002561 ORTHO05D008175 2.5e-30 135.2 84 81.0
Haze_22559 Corylus avellana HOM05D002561 ORTHO05D008175 3.2e-30 134.8 94 76.6
Aqoxy5G01541 Aquilegia oxysepala HOM05D002561 ORTHO05D008175 4.2e-30 134.4 84 81.0
Hma1.2p1_0469F.1_g158880 Hydrangea macrophylla HOM05D002561 ORTHO05D008175 4.2e-30 134.4 84 81.0
Hma1.2p1_0469F.1_g158890 Hydrangea macrophylla HOM05D002561 ORTHO05D008175 4.2e-30 134.4 84 81.0
Zm00001eb167660 Zea mays HOM05D002561 ORTHO05D008175 5.5e-30 134.0 84 81.0
EL10Ac1g00604 Beta vulgaris HOM05D002561 ORTHO05D008175 7.2e-30 133.7 84 81.0
Carub.0008s1849 Capsella rubella HOM05D002561 ORTHO05D008175 7.2e-30 133.7 84 79.8
Os11g0592700 Oryza sativa ssp. japonica HOM05D002561 ORTHO05D008175 7.2e-30 133.7 84 81.0
PSO731G0115 Papaver somniferum HOM05D002561 ORTHO05D008175 7.2e-30 133.7 84 81.0
PSO764G0318 Papaver somniferum HOM05D002561 ORTHO05D008175 7.2e-30 133.7 84 81.0
Sp6g19630 Schrenkiella parvula HOM05D002561 ORTHO05D008175 7.2e-30 133.7 84 79.8
CARHR271740 Cardamine hirsuta HOM05D002561 ORTHO05D008175 9.4e-30 133.3 84 78.6
Manes.05G154700 Manihot esculenta HOM05D002561 ORTHO05D008175 9.4e-30 133.3 84 79.8
Glyma.17G253900 Glycine max HOM05D002561 ORTHO05D008175 1.2e-29 132.9 84 79.8
Lj5g0007882 Lotus japonicus HOM05D002561 ORTHO05D008175 1.2e-29 132.9 84 79.8
Phvul.001G011200 Phaseolus vulgaris HOM05D002561 ORTHO05D008175 1.2e-29 132.9 84 79.8
HPP92_013175 Vanilla planifolia HOM05D002561 ORTHO05D008175 1.2e-29 132.9 84 78.6
VMungo0647G1104 Vigna mungo HOM05D002561 ORTHO05D008175 1.2e-29 132.9 84 79.8
AUR62014473 Chenopodium quinoa HOM05D002561 ORTHO05D008175 2.1e-29 132.1 84 81.0
AUR62034526 Chenopodium quinoa HOM05D002561 ORTHO05D008175 2.1e-29 132.1 84 81.0
Cc10_g02420 Coffea canephora HOM05D002561 ORTHO05D008175 2.1e-29 132.1 84 79.8
Nitab4.5_0013623g0010 Nicotiana tabacum HOM05D002561 ORTHO05D008175 2.1e-29 132.1 84 79.8
Solyc04g080770.3 Solanum lycopersicum HOM05D002561 ORTHO05D008175 2.1e-29 132.1 84 79.8
Sopen04g034360 Solanum pennellii HOM05D002561 ORTHO05D008175 2.1e-29 132.1 84 79.8
Medtr1g022980 Medicago truncatula HOM05D002561 ORTHO05D008175 2.7e-29 131.7 84 78.6
Psat6g009920 Pisum sativum HOM05D002561 ORTHO05D008175 2.7e-29 131.7 84 78.6
Hund17196 Selenicereus undatus HOM05D002561 ORTHO05D008175 2.7e-29 131.7 82 80.5
Ca_30047_v3 Cicer arietinum L. HOM05D002561 ORTHO05D006466 3.6e-29 131.3 84 78.6
Lj4A33G81 Lonicera japonica HOM05D002561 ORTHO05D008175 3.6e-29 131.3 84 79.8
Ah.05g180860 Amaranthus hybridus HOM05D002561 ORTHO05D008175 6.1e-29 130.6 84 79.8
CAN.G851.43 Capsicum annuum HOM05D002561 ORTHO05D008175 6.1e-29 130.6 83 78.3
HPP92_013174 Vanilla planifolia HOM05D002561 ORTHO05D008175 6.1e-29 130.6 84 77.4
Lsat_1_v5_gn_5_26741 Lactuca sativa HOM05D002561 ORTHO05D008175 1.4e-28 129.4 84 78.6
SalBow8G2957 Salvia bowleyana HOM05D002561 ORTHO05D008175 1.4e-28 129.4 84 79.8
SalBow8G4848 Salvia bowleyana HOM05D002561 ORTHO05D008175 1.4e-28 129.4 84 79.8
PGSC0003DMG400003749 Solanum tuberosum HOM05D002561 ORTHO05D008175 1.4e-28 129.4 91 73.6
Sc15g0007160 Simmondsia chinensis HOM05D002561 ORTHO05D008175 1.8e-28 129.0 84 77.4
HanXRQChr05g0151221 Helianthus annuus HOM05D002561 ORTHO05D008175 2.3e-28 128.6 84 77.4
Migut.N03115 Erythranthe guttata HOM05D002561 ORTHO05D008175 3.0e-28 128.3 84 78.6
Nitab4.5_0001861g0050 Nicotiana tabacum HOM05D002561 ORTHO05D008175 5.2e-28 127.5 83 77.1
SGA_v2.0_scaffold162G37906 Striga asiatica HOM05D002561 ORTHO05D008175 5.2e-28 127.5 84 77.4
unitig_22.g6786 Utricularia gibba HOM05D002561 ORTHO05D008175 5.2e-28 127.5 84 77.4
Pp3c26_340 Physcomitrium patens HOM05D002561 ORTHO05D008175 8.8e-28 126.7 84 77.4
SMO364G0133 Selaginella moellendorffii HOM05D002561 ORTHO05D008175 1.5e-27 125.9 84 77.4
AagrBONN_evm.TU.Sc2ySwM_117.3804 Anthoceros agrestis HOM05D002561 ORTHO05D008175 2.6e-27 125.2 84 76.2
arahy.Tifrunner.gnm1.ann1.1U19Q5 Arachis hypogaea HOM05D002561 ORTHO05D008175 5.7e-27 124.0 109 61.5
Mapoly0064s0088 Marchantia polymorpha HOM05D002561 ORTHO05D008175 5.7e-27 124.0 84 76.2
Oeu046223.1 Olea europaea HOM05D002561 ORTHO05D008175 9.7e-27 123.2 111 61.3
TPR.G30486 Trifolium pratense HOM05D002561 ORTHO05D008175 2.2e-26 122.1 85 75.3
Peaxi162Scf00189g00816 Petunia axillaris HOM05D002561 ORTHO05D008175 1.1e-25 119.8 109 61.5
DCAR_017516 Daucus carota HOM05D002561 ORTHO05D008175 1.4e-25 119.4 109 61.5
PRCOL_00004156 Prasinoderma coloniale HOM05D002561 ORTHO05D008175 6.8e-20 100.5 93 61.3
Cre16.g665650 Chlamydomonas reinhardtii HOM05D002561 ORTHO05D008175 8.8e-20 100.1 91 61.5
MCO16G051 Micromonas commoda HOM05D002561 ORTHO05D008175 4.8e-18 94.4 88 56.8
Sabra02G0024900 Salix brachista HOM05D002561 ORTHO05D008175 8.3e-18 93.6 80 65.0
COL.COLO4_26238 Corchorus olitorius HOM05D002561 ORTHO05D008175 2.4e-17 92.0 80 63.8
Aa31sc143G30 Aethionema arabicum HOM05D002561 ORTHO05D008175 4.1e-17 91.3 80 62.5
ClCG05G018690 Citrullus lanatus HOM05D002561 ORTHO05D008175 5.4e-17 90.9 80 62.5
Rhsim06G0028500 Rhododendron simsii HOM05D002561 ORTHO05D008175 2.5e-14 82.0 72 61.1
MBI05_g12583_MAGBIO Magnolia biondii HOM05D002561 ORTHO05D008175 1.2e-13 79.7 72 61.1
arahy.Tifrunner.gnm1.ann1.M2UU0S Arachis hypogaea HOM05D002561 ORTHO05D008175 2.3e-12 75.5 49 71.4
Lalb_Chr14g0369561 Lupinus albus HOM05D002561 ORTHO05D008175 4.0e-12 74.7 38 89.5
Ca_13381_v3 Cicer arietinum L. HOM05D002561 ORTHO05D006466 5.2e-12 74.3 38 89.5
SEGI_28186 Sequoiadendron giganteum HOM05D002561 ORTHO05D008175 8.9e-12 73.6 54 64.8
QL02p010154 Quercus lobata HOM05D002561 ORTHO05D008175 1.5e-11 72.8 38 89.5
Lalb_Chr14g0369571 Lupinus albus HOM05D002561 ORTHO05D008175 9.8e-11 70.1 38 84.2
HPP92_013173 Vanilla planifolia HOM05D002561 ORTHO05D008175 1.7e-10 69.3 38 84.2
arahy.Tifrunner.gnm1.ann1.NIBJ6A Arachis hypogaea HOM05D002561 ORTHO05D008175 3.7e-10 68.2 38 86.8
QL02p010149 Quercus lobata HOM05D002561 ORTHO05D008175 5.4e-09 64.3 31 93.5
Cpa.g.sc140.4 Carica papaya HOM05D002561 ORTHO05D008175 2.0e-08 62.4 31 90.3
Haze_27107 Corylus avellana HOM05D002561 ORTHO05D008175 2.0e-08 62.4 84 47.6
CBR_g52689 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-07 58.9 38 73.7


User provided reference genes

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