Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005877 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 7.2e-46 186.8 89 100.0
CSS0009752 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 2.7e-24 115.2 108 61.1
CSS0016383 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 9.4e-22 106.7 87 67.8
Nn1g09612 Nelumbo nucifera HOM05D003336 ORTHO05D003807 9.4e-22 106.7 108 59.3
QL07p004835 Quercus lobata HOM05D003336 ORTHO05D003807 9.4e-22 106.7 107 58.9
Sed0018746 Sechium edule HOM05D003336 ORTHO05D003807 1.6e-21 105.9 108 57.4
ClCG10G008650 Citrullus lanatus HOM05D003336 ORTHO05D003807 2.1e-21 105.5 107 57.0
CSS0043784 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 2.7e-21 105.1 107 58.9
vmacro00616 Vaccinium macrocarpon HOM05D003336 ORTHO05D003807 2.7e-21 105.1 107 56.1
vmacro00649 Vaccinium macrocarpon HOM05D003336 ORTHO05D003807 2.7e-21 105.1 107 56.1
HPP92_018106 Vanilla planifolia HOM05D003336 ORTHO05D003807 2.7e-21 105.1 107 57.9
Ciclev10001634m.g Citrus clementina HOM05D003336 ORTHO05D003807 4.7e-21 104.4 107 57.9
Prupe.1G196300 Prunus persica HOM05D003336 ORTHO05D003807 4.7e-21 104.4 107 57.0
CsaV3_5G026930 Cucumis sativus L. HOM05D003336 ORTHO05D003807 6.1e-21 104.0 107 56.1
AL7G30880 Arabidopsis lyrata HOM05D003336 ORTHO05D003807 8.0e-21 103.6 108 56.5
AT4G22720 Arabidopsis thaliana HOM05D003336 ORTHO05D003807 8.0e-21 103.6 108 56.5
Carub.0007s1861 Capsella rubella HOM05D003336 ORTHO05D003807 8.0e-21 103.6 108 56.5
CARHR229640 Cardamine hirsuta HOM05D003336 ORTHO05D003807 8.0e-21 103.6 108 56.5
Cpa.g.sc9.295 Carica papaya HOM05D003336 ORTHO05D003807 8.0e-21 103.6 107 57.0
Eucgr.H01866 Eucalyptus grandis HOM05D003336 ORTHO05D003807 8.0e-21 103.6 108 55.6
Thhalv10025586m.g Eutrema salsugineum HOM05D003336 ORTHO05D003807 8.0e-21 103.6 108 56.5
Lj6C18T11 Lonicera japonica HOM05D003336 ORTHO05D003807 8.0e-21 103.6 102 57.8
CSS0035259 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.0e-20 103.2 102 58.8
CANSAT78G0594 Cannabis sativa HOM05D003336 ORTHO05D003807 1.0e-20 103.2 107 56.1
Eucgr.A00092 Eucalyptus grandis HOM05D003336 ORTHO05D003807 1.0e-20 103.2 107 56.1
Glyma.17G108000 Glycine max HOM05D003336 ORTHO05D003807 1.0e-20 103.2 107 56.1
Glyma.19G252200 Glycine max HOM05D003336 ORTHO05D003807 1.0e-20 103.2 107 56.1
Gohir.D02G013300 Gossypium hirsutum HOM05D003336 ORTHO05D003807 1.0e-20 103.2 107 56.1
Gorai.005G016800 Gossypium raimondii HOM05D003336 ORTHO05D003807 1.0e-20 103.2 107 56.1
Hma1.2p1_0886F.1_g232710 Hydrangea macrophylla HOM05D003336 ORTHO05D003807 1.0e-20 103.2 107 56.1
Lalb_Chr18g0044261 Lupinus albus HOM05D003336 ORTHO05D003807 1.0e-20 103.2 107 56.1
MBI01_g10303_MAGBIO Magnolia biondii HOM05D003336 ORTHO05D003807 1.0e-20 103.2 101 59.4
MD17G1219400 Malus domestica HOM05D003336 ORTHO05D003807 1.0e-20 103.2 107 57.0
PGR083G1911 Punica granatum HOM05D003336 ORTHO05D003807 1.0e-20 103.2 107 57.0
SGA_v2.0_scaffold1G00608 Striga asiatica HOM05D003336 ORTHO05D003807 1.0e-20 103.2 107 56.1
THA.LOC104806347 Tarenaya hassleriana HOM05D003336 ORTHO05D003807 1.0e-20 103.2 108 55.6
arahy.Tifrunner.gnm1.ann1.HN7X2L Arachis hypogaea HOM05D003336 ORTHO05D003807 1.4e-20 102.8 107 58.9
AUR62003310 Chenopodium quinoa HOM05D003336 ORTHO05D003807 1.4e-20 102.8 108 56.5
Gohir.A02G012500 Gossypium hirsutum HOM05D003336 ORTHO05D003807 1.4e-20 102.8 107 55.1
Sc25g0002520 Simmondsia chinensis HOM05D003336 ORTHO05D003807 1.4e-20 102.8 107 56.1
Thecc.04G177600 Theobroma cacao HOM05D003336 ORTHO05D003807 1.4e-20 102.8 107 55.1
GSVIVG01010779001 Vitis vinifera HOM05D003336 ORTHO05D003807 1.4e-20 102.8 104 56.7
Actinidia35985 Actinidia chinensis HOM05D003336 ORTHO05D003807 1.8e-20 102.4 101 57.4
Actinidia35987 Actinidia chinensis HOM05D003336 ORTHO05D003807 1.8e-20 102.4 101 57.4
Aqoxy1G02652 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 1.8e-20 102.4 102 57.8
Aqoxy2G03656 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 1.8e-20 102.4 102 57.8
arahy.Tifrunner.gnm1.ann1.4MR6LE Arachis hypogaea HOM05D003336 ORTHO05D003807 1.8e-20 102.4 107 57.9
MSTRG.9761 Avicennia marina HOM05D003336 ORTHO05D003807 1.8e-20 102.4 102 57.8
CSS0004282 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.8e-20 102.4 128 51.6
CSS0038429 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.8e-20 102.4 102 57.8
Duzib175G0004 Durio zibethinus HOM05D003336 ORTHO05D003807 1.8e-20 102.4 107 55.1
Nitab4.5_0000233g0220 Nicotiana tabacum HOM05D003336 ORTHO05D003807 1.8e-20 102.4 117 52.1
Atru.chr6.1778 Acer truncatum HOM05D003336 ORTHO05D003807 2.3e-20 102.1 107 56.1
EL10Ac3g06008 Beta vulgaris HOM05D003336 ORTHO05D003807 2.3e-20 102.1 104 55.8
Haze_21691 Corylus avellana HOM05D003336 ORTHO05D003807 2.3e-20 102.1 101 58.4
FAN10G0305 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.3e-20 102.1 100 60.0
FAN10G0412 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.3e-20 102.1 100 60.0
Lj1g0015608 Lotus japonicus HOM05D003336 ORTHO05D003807 2.3e-20 102.1 107 57.0
Medtr1g090817 Medicago truncatula HOM05D003336 ORTHO05D003807 2.3e-20 102.1 107 56.1
Peaxi162Scf00108g01317 Petunia axillaris HOM05D003336 ORTHO05D003807 2.3e-20 102.1 103 56.3
Psat6g173800 Pisum sativum HOM05D003336 ORTHO05D003807 2.3e-20 102.1 107 56.1
TWI34G1872 Tripterygium wilfordii HOM05D003336 ORTHO05D003807 2.3e-20 102.1 102 55.9
Aa31LG6G4680 Aethionema arabicum HOM05D003336 ORTHO05D003807 3.0e-20 101.7 107 56.1
arahy.Tifrunner.gnm1.ann1.DI9DGG Arachis hypogaea HOM05D003336 ORTHO05D003807 3.0e-20 101.7 102 57.8
Cfa013247 Carpinus fangiana HOM05D003336 ORTHO05D003807 3.0e-20 101.7 101 57.4
Phvul.006G109300 Phaseolus vulgaris HOM05D003336 ORTHO05D003807 3.0e-20 101.7 107 55.1
TPR.G37811 Trifolium pratense HOM05D003336 ORTHO05D003807 3.0e-20 101.7 107 55.1
VMungo0540G1651 Vigna mungo HOM05D003336 ORTHO05D003807 3.0e-20 101.7 107 55.1
Duzib151G0181 Durio zibethinus HOM05D003336 ORTHO05D003807 4.0e-20 101.3 107 55.1
Rhsim09G0026500 Rhododendron simsii HOM05D003336 ORTHO05D003807 4.0e-20 101.3 107 56.1
RhsimUnG0196100 Rhododendron simsii HOM05D003336 ORTHO05D003807 4.0e-20 101.3 107 56.1
BcaC09g51096 Brassica carinata HOM05D003336 ORTHO05D003807 5.2e-20 100.9 108 55.6
C01p16980 Brassica napus HOM05D003336 ORTHO05D003807 5.2e-20 100.9 108 55.6
BolC1t01638H Brassica oleracea HOM05D003336 ORTHO05D003807 5.2e-20 100.9 108 55.6
DCAR_026317 Daucus carota HOM05D003336 ORTHO05D003807 5.2e-20 100.9 107 57.0
RcHm_v2.0_Chr1g0331181 Rosa chinensis HOM05D003336 ORTHO05D003807 5.2e-20 100.9 107 56.1
A01p13940 Brassica napus HOM05D003336 ORTHO05D003807 6.8e-20 100.5 108 54.6
BraA01t01340Z Brassica rapa HOM05D003336 ORTHO05D003807 6.8e-20 100.5 108 54.6
AUR62008210 Chenopodium quinoa HOM05D003336 ORTHO05D003807 6.8e-20 100.5 107 56.1
AUR62011428 Chenopodium quinoa HOM05D003336 ORTHO05D003807 6.8e-20 100.5 107 56.1
AUR62030962 Chenopodium quinoa HOM05D003336 ORTHO05D003807 6.8e-20 100.5 107 56.1
PSO210G2800 Papaver somniferum HOM05D003336 ORTHO05D003807 6.8e-20 100.5 102 55.9
SalBow1G0055 Salvia bowleyana HOM05D003336 ORTHO05D003807 6.8e-20 100.5 102 54.9
SalBow1G1314 Salvia bowleyana HOM05D003336 ORTHO05D003807 6.8e-20 100.5 102 54.9
Solyc02g068750.1 Solanum lycopersicum HOM05D003336 ORTHO05D003807 6.8e-20 100.5 107 56.1
Sopen02g017920 Solanum pennellii HOM05D003336 ORTHO05D003807 6.8e-20 100.5 107 56.1
PGSC0003DMG400010450 Solanum tuberosum HOM05D003336 ORTHO05D003807 6.8e-20 100.5 107 56.1
Ah.11g051610 Amaranthus hybridus HOM05D003336 ORTHO05D003807 8.8e-20 100.1 107 55.1
BcaNung01042 Brassica carinata HOM05D003336 ORTHO05D003807 8.8e-20 100.1 107 55.1
Dinv22743 Davidia involucrata HOM05D003336 ORTHO05D003807 8.8e-20 100.1 102 56.9
Potri.017G029200 Populus trichocarpa HOM05D003336 ORTHO05D003807 8.8e-20 100.1 107 56.1
Ca_10458_v3 Cicer arietinum L. HOM05D003336 ORTHO05D003807 1.2e-19 99.8 101 55.4
Mapoly0054s0003 Marchantia polymorpha HOM05D003336 ORTHO05D003807 1.2e-19 99.8 107 53.3
SpUn1040_0020 Schrenkiella parvula HOM05D003336 ORTHO05D003807 1.2e-19 99.8 101 56.4
FvH4_3g16550 Fragaria vesca HOM05D003336 ORTHO05D003807 1.5e-19 99.4 107 56.1
FvH4_7g04970 Fragaria vesca HOM05D003336 ORTHO05D003807 1.5e-19 99.4 107 56.1
FAN11G0541 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.5e-19 99.4 107 56.1
FAN16G2332 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.5e-19 99.4 107 56.1
FAN25G0065 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.5e-19 99.4 107 56.1
Manes.04G043500 Manihot esculenta HOM05D003336 ORTHO05D003807 1.5e-19 99.4 107 54.2
Migut.N03104 Erythranthe guttata HOM05D003336 ORTHO05D003807 2.0e-19 99.0 107 54.2
SEGI_08325 Sequoiadendron giganteum HOM05D003336 ORTHO05D003807 2.0e-19 99.0 102 54.9
ATR0796G111 Amborella trichopoda HOM05D003336 ORTHO05D003807 2.6e-19 98.6 105 54.3
CAN.G149.29 Capsicum annuum HOM05D003336 ORTHO05D003807 2.6e-19 98.6 102 56.9
Lalb_Chr09g0333021 Lupinus albus HOM05D003336 ORTHO05D003807 4.4e-19 97.8 102 52.9
SHI23517 Sapria himalayana HOM05D003336 ORTHO05D003807 4.4e-19 97.8 107 56.1
Cc04_g08960 Coffea canephora HOM05D003336 ORTHO05D003807 5.7e-19 97.4 102 54.9
FAN06G1925 Fragaria x ananassa HOM05D003336 ORTHO05D003807 5.7e-19 97.4 107 55.1
HanXRQChr17g0533451 Helianthus annuus HOM05D003336 ORTHO05D003807 7.5e-19 97.1 107 54.2
SMO196G0197 Selaginella moellendorffii HOM05D003336 ORTHO05D003807 7.5e-19 97.1 102 54.9
ECA246G0584 Erigeron canadensis HOM05D003336 ORTHO05D003807 9.8e-19 96.7 107 53.3
Eucgr.A00283 Eucalyptus grandis HOM05D003336 ORTHO05D003807 9.8e-19 96.7 87 60.9
CBR_g36984 Chara braunii HOM05D003336 ORTHO05D003807 1.3e-18 96.3 102 53.9
Lsat_1_v5_gn_3_6100 Lactuca sativa HOM05D003336 ORTHO05D003807 1.3e-18 96.3 107 52.3
Zm00001eb283430 Zea mays HOM05D003336 ORTHO05D003807 1.7e-18 95.9 107 54.2
Os05g0194600 Oryza sativa ssp. japonica HOM05D003336 ORTHO05D003807 2.2e-18 95.5 107 53.3
Pp3c8_19600 Physcomitrium patens HOM05D003336 ORTHO05D003807 2.8e-18 95.1 102 52.9
FAN17G2067 Fragaria x ananassa HOM05D003336 ORTHO05D003807 6.3e-18 94.0 101 55.4
arahy.Tifrunner.gnm1.ann1.UX0YUZ Arachis hypogaea HOM05D003336 ORTHO05D003807 1.4e-17 92.8 101 54.5
FAN15G0900 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.8e-17 92.4 101 54.5
Oeu061601.1 Olea europaea HOM05D003336 ORTHO05D003807 9.1e-17 90.1 82 58.5
CSS0025461 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 2.7e-16 88.6 119 48.7
MCO05G700 Micromonas commoda HOM05D003336 ORTHO05D003807 2.7e-16 88.6 102 53.9
PRCOL_00003655 Prasinoderma coloniale HOM05D003336 ORTHO05D003807 2.9e-15 85.1 102 49.0
CSS0002456 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 5.0e-15 84.3 70 65.7
Prupe.1G196100 Prunus persica HOM05D003336 ORTHO05D003807 8.6e-15 83.6 70 65.7
Haze_26283 Corylus avellana HOM05D003336 ORTHO05D003807 2.5e-14 82.0 102 44.1
Cfa023393 Carpinus fangiana HOM05D003336 ORTHO05D003807 2.1e-13 79.0 102 44.1
Sed0015341 Sechium edule HOM05D003336 ORTHO05D003807 6.1e-13 77.4 107 46.7
Nitab4.5_0005460g0060 Nicotiana tabacum HOM05D003336 ORTHO05D003807 4.0e-12 74.7 90 51.1
BcaB07g33710 Brassica carinata HOM05D003336 ORTHO05D003807 5.2e-12 74.3 91 50.5
Atru.chr6.1044 Acer truncatum HOM05D003336 ORTHO05D003807 1.2e-11 73.2 73 54.8
arahy.Tifrunner.gnm1.ann1.H7WPER Arachis hypogaea HOM05D003336 ORTHO05D003807 1.2e-11 73.2 73 58.9
Lalb_Chr05g0230051 Lupinus albus HOM05D003336 ORTHO05D003807 2.0e-11 72.4 67 58.2
SEGI_10539 Sequoiadendron giganteum HOM05D003336 ORTHO05D003807 2.0e-11 72.4 82 47.6
Atru.chr6.1080 Acer truncatum HOM05D003336 ORTHO05D003807 9.8e-11 70.1 68 55.9
MELO3C000960.2 Cucumis melo HOM05D003336 ORTHO05D003807 2.7e-08 62.0 81 49.4
CSS0038565 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 4.5e-08 61.2 51 64.7
FAN03G2504 Fragaria x ananassa HOM05D003336 ORTHO05D003807 4.5e-08 61.2 51 64.7
MELO3C013276.2 Cucumis melo HOM05D003336 ORTHO05D003807 7.8e-08 60.5 34 79.4
MELO3C021601.2 Cucumis melo HOM05D003336 ORTHO05D003807 7.8e-08 60.5 34 79.4
MELO3C028715.2 Cucumis melo HOM05D003336 ORTHO05D003807 7.8e-08 60.5 51 64.7
CDE02G0747 Ceratophyllum demersum HOM05D003336 ORTHO05D003807 1.0e-07 60.1 60 55.0
CSS0000567 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.3e-07 59.7 114 39.5
RcHm_v2.0_Chr1g0329841 Rosa chinensis HOM05D003336 ORTHO05D003807 2.3e-07 58.9 51 60.8
CiPaw.02G054300 Carya illinoinensis HOM05D003336 ORTHO05D003807 2.9e-07 58.5 51 62.7
Migut.O00911 Erythranthe guttata HOM05D003336 ORTHO05D003807 5.0e-07 57.8 36 75.0
Sp7g20730 Schrenkiella parvula HOM05D003336 ORTHO05D003807 8.6e-07 57.0 51 58.8
Lj6C18T3 Lonicera japonica HOM05D003336 ORTHO05D003807 1.1e-06 56.6 32 78.1
Psat6g173760 Pisum sativum HOM05D003336 ORTHO05D003807 1.5e-06 56.2 51 58.8
RcHm_v2.0_Chr1g0329821 Rosa chinensis HOM05D003336 ORTHO05D003807 1.5e-06 56.2 33 72.7
FAN21G2317 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.5e-06 55.5 31 77.4
Lj4g0011036 Lotus japonicus HOM05D003336 ORTHO05D003807 4.3e-06 54.7 64 48.4
Potri.007G129400 Populus trichocarpa HOM05D003336 ORTHO05D003807 7.3e-06 53.9 47 59.6
Aqoxy7G02152 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 9.5e-06 53.5 49 61.2


User provided reference genes

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