Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 0.0e+00 1711.8 886 100.0
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 0.0e+00 1656.0 863 99.4
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 0.0e+00 1230.7 901 75.4
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 0.0e+00 1178.7 891 73.7
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 0.0e+00 1119.0 988 64.9
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 0.0e+00 1102.4 917 68.0
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 0.0e+00 1102.0 1084 60.5
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 9.6e-300 1033.5 728 76.8
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 5.4e-295 1017.7 920 63.9
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 1.9e-292 1009.2 894 63.9
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 3.4e-289 998.4 883 63.6
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 2.5e-279 965.7 909 61.7
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 2.1e-275 952.6 907 60.9
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 8.2e-275 950.7 919 60.0
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 1.6e-270 936.4 903 63.5
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 8.7e-269 930.6 893 60.1
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 2.8e-267 925.6 920 59.7
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 6.9e-266 921.0 782 65.6
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 6.5e-264 914.4 969 56.6
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 8.5e-264 914.1 922 58.9
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 1.1e-263 913.7 911 58.5
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 2.1e-262 909.4 960 58.0
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 3.3e-260 902.1 798 63.9
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 2.2e-259 899.4 958 56.5
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 5.3e-258 894.8 925 58.5
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 1.2e-257 893.6 934 57.8
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 3.2e-255 885.6 942 57.7
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 4.2e-255 885.2 917 58.1
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 2.1e-254 882.9 832 61.4
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 1.2e-249 867.1 975 54.3
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 1.5e-247 860.1 955 55.0
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 3.6e-246 855.5 916 57.2
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 3.0e-245 852.4 966 54.8
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 2.6e-244 849.4 912 56.7
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 1.1e-242 844.0 852 57.7
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 1.1e-242 844.0 936 55.8
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 4.1e-242 842.0 913 56.7
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 1.7e-240 836.6 902 57.1
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 6.5e-240 834.7 914 55.3
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 1.5e-239 833.6 1004 51.6
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 4.2e-239 832.0 901 54.7
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 9.4e-239 830.9 939 54.3
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 8.0e-238 827.8 905 55.2
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 1.0e-237 827.4 902 56.1
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 3.0e-237 825.9 948 54.2
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 5.2e-237 825.1 915 55.7
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 2.0e-236 823.2 897 56.5
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 1.3e-235 820.5 870 55.9
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 2.8e-235 819.3 928 54.7
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 6.3e-235 818.1 901 56.3
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 8.3e-235 817.8 935 53.7
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 5.4e-234 815.1 938 52.9
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 2.7e-233 812.8 906 55.0
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 1.0e-232 810.8 914 54.8
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.3e-232 810.4 966 53.0
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.7e-232 810.1 975 52.0
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 2.9e-232 809.3 973 51.8
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 2.9e-232 809.3 916 55.0
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 6.5e-232 808.1 974 51.4
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 2.1e-230 803.1 1023 50.6
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 2.1e-230 803.1 913 53.6
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 2.1e-230 803.1 891 55.9
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 4.7e-230 802.0 914 54.4
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 8.0e-230 801.2 926 54.8
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.0e-229 800.8 974 51.8
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.4e-229 800.4 975 51.7
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 2.8e-227 792.7 936 52.6
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 9.2e-226 787.7 930 52.6
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 4.5e-225 785.4 912 53.8
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 8.6e-224 781.2 912 53.5
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 4.3e-223 778.9 912 53.5
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 5.6e-223 778.5 987 50.4
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 3.6e-222 775.8 907 53.4
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 3.0e-221 772.7 822 56.4
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 4.0e-221 772.3 986 50.0
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 2.2e-219 766.5 811 55.7
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 9.2e-218 761.1 1014 48.5
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 1.3e-216 757.3 914 52.8
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 3.0e-216 756.1 1053 48.4
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 5.2e-213 745.3 1014 48.1
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 4.9e-211 738.8 1018 48.0
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 4.1e-210 735.7 968 49.8
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 1.6e-209 733.8 906 49.8
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 4.7e-206 722.2 914 51.2
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 7.5e-204 714.9 821 53.3
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 1.3e-203 714.1 941 49.6
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 1.7e-203 713.8 901 50.2
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.2e-203 713.4 821 53.2
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 7.3e-199 698.4 934 48.7
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 9.5e-199 698.0 890 49.4
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 1.5e-196 690.6 825 50.2
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 1.3e-195 687.6 791 53.4
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.1e-194 684.5 857 50.9
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 5.4e-194 682.2 793 53.0
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 4.6e-193 679.1 906 48.1
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 8.6e-192 674.9 814 50.1
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 2.5e-191 673.3 906 47.0
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 7.3e-191 671.8 839 49.3
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 7.3e-191 671.8 910 47.7
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 9.6e-191 671.4 909 47.3
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 1.1e-189 667.9 927 47.9
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 4.0e-189 666.0 907 46.9
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 7.6e-188 661.8 907 47.6
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 2.2e-187 660.2 901 47.3
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 4.9e-187 659.1 938 46.3
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 6.4e-187 658.7 788 51.5
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 1.9e-186 657.1 906 46.2
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 5.4e-186 655.6 910 46.5
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 2.1e-185 653.7 938 45.7
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 2.7e-185 653.3 903 46.4
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 2.7e-185 653.3 903 46.4
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 1.1e-183 647.9 966 44.5
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 4.3e-183 646.0 888 46.8
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 2.1e-182 643.7 900 46.3
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 4.0e-181 639.4 969 44.3
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 1.3e-179 634.4 899 45.6
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 1.9e-178 630.6 917 43.9
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 8.7e-176 621.7 914 47.6
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 3.3e-175 619.8 766 50.1
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 8.1e-174 615.1 919 47.2
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.4e-173 614.4 902 46.2
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 1.5e-172 610.9 871 47.2
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 3.2e-170 603.2 926 44.2
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 8.2e-166 588.6 938 45.0
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 5.3e-165 585.9 888 43.6
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 4.2e-154 549.7 814 43.0
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 1.6e-153 547.7 914 41.1
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 9.4e-146 521.9 799 45.4
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 7.4e-143 512.3 970 40.5
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 3.5e-132 476.9 538 55.8
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 3.7e-126 456.8 371 69.8
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 3.0e-120 437.2 927 36.6
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.9e-114 417.9 969 34.9
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.9e-114 417.9 969 34.9
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 1.2e-105 388.7 677 39.3
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 2.8e-105 387.5 781 36.7
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 1.7e-99 368.2 367 56.9
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.2e-97 362.1 337 60.2
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 7.1e-85 319.7 391 53.7
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 4.3e-82 310.5 285 58.6
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 2.1e-76 291.6 414 50.2
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 2.1e-73 281.6 969 27.9
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 7.1e-69 266.5 473 41.0
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 1.8e-64 251.9 251 59.0
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 3.2e-53 214.5 259 45.9
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 1.9e-50 205.3 137 75.9
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 6.5e-46 190.3 482 34.4
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.2e-39 169.5 202 52.5
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 3.2e-37 161.4 226 49.6
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 2.3e-35 155.2 165 56.4
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 3.0e-35 154.8 184 46.7
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 5.0e-30 137.5 92 75.0
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 1.0e-27 129.8 156 43.6
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 8.8e-27 126.7 111 58.6
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 1.5e-26 125.9 205 45.4
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 8.2e-25 120.2 86 70.9
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 1.9e-21 109.0 79 70.9
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 1.8e-19 102.4 89 58.4
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 6.7e-19 100.5 113 49.6
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 2.6e-18 98.6 105 54.3
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 7.4e-18 97.1 89 56.2
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 1.7e-17 95.9 71 69.0
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 2.2e-17 95.5 118 42.4
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 2.8e-17 95.1 69 73.9
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 2.4e-16 92.0 60 83.3
CSS0046083 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 3.1e-16 91.7 138 54.3
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 5.3e-16 90.9 69 65.2
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 2.0e-15 89.0 84 58.3
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 1.3e-14 86.3 104 47.1
CSS0040150 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.7e-14 85.9 67 67.2
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 1.7e-14 85.9 98 52.0
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 8.5e-14 83.6 59 71.2
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 2.5e-13 82.0 136 42.6
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.8e-11 75.9 92 45.7
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 4.0e-11 74.7 126 38.9
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 6.8e-11 73.9 78 48.7
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 4.4e-10 71.2 101 40.6
TAR624G1003 Trochodendron aralioides HOM05D003782 ORTHO05D004361 2.8e-09 68.6 101 51.5
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 3.7e-09 68.2 66 48.5
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 1.8e-08 65.9 93 52.7
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 9.1e-08 63.5 60 50.0
Zm00001eb274810 Zea mays HOM05D003782 ORTHO05D004361 2.0e-07 62.4 62 53.2
MCO02G174 Micromonas commoda HOM05D003782 ORTHO05D004361 5.9e-07 60.8 310 25.8
COL.COLO4_08259 Corchorus olitorius HOM05D000149 ORTHO05D000076 1.3e-06 59.7 50 64.0
MBI19_g13594_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 1.3e-06 59.7 55 45.5


User provided reference genes

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