Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005835 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D000879 3.2e-44 181.4 95 100.0
CSS0028682 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D109265 1.4e-36 156.0 88 95.5
CSS0036968 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D000879 4.7e-27 124.4 107 67.3
CSS0003257 Camellia sinensis var. sinensis HOM05D000291 ORTHO05D000879 1.8e-26 122.5 95 72.6
CSS0022375 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D109211 3.3e-25 118.2 106 66.0
CSS0025856 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D110646 2.2e-24 115.5 105 65.7
CSS0044659 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D000879 3.8e-21 104.8 93 64.5
CSS0039170 Camellia sinensis var. sinensis HOM05D000291 ORTHO05D000879 2.2e-16 89.0 90 64.4
vmacro20816 Vaccinium macrocarpon HOM05D000291 ORTHO05D000879 8.3e-16 87.0 88 62.5
Glyma.13G100400 Glycine max HOM05D000291 ORTHO05D000879 7.7e-14 80.5 77 59.7
Potri.018G142800 Populus trichocarpa HOM05D000291 ORTHO05D000879 7.7e-14 80.5 60 73.3
Actinidia01277 Actinidia chinensis HOM05D000291 ORTHO05D000879 1.7e-13 79.3 88 62.5
Dinv25439 Davidia involucrata HOM05D000291 ORTHO05D000879 2.3e-13 79.0 97 51.5
Phvul.003G141500 Phaseolus vulgaris HOM05D000291 ORTHO05D000879 2.3e-13 79.0 60 73.3
Sabra18G0116600 Salix brachista HOM05D000291 ORTHO05D000879 2.3e-13 79.0 58 74.1
VMungo1215G0077 Vigna mungo HOM05D000291 ORTHO05D000879 6.5e-13 77.4 53 81.1
GSVIVG01010864001 Vitis vinifera HOM05D000291 ORTHO05D000879 1.5e-12 76.3 81 60.5
Sabra06G0056500 Salix brachista HOM05D000291 ORTHO05D000879 2.5e-12 75.5 85 60.0
Cpa.g.sc95.13 Carica papaya HOM05D000291 ORTHO05D000879 3.2e-12 75.1 94 54.3
Potri.006G075800 Populus trichocarpa HOM05D000291 ORTHO05D000879 3.2e-12 75.1 58 70.7
Cfa013450 Carpinus fangiana HOM05D000291 ORTHO05D000879 7.2e-12 73.9 83 54.2
Medtr2g037980 Medicago truncatula HOM05D000291 ORTHO05D000879 9.5e-12 73.6 44 86.4
Ca_02104_v3 Cicer arietinum L. HOM05D000291 ORTHO05D000879 1.6e-11 72.8 47 80.9
Duzib168G0006 Durio zibethinus HOM05D000291 ORTHO05D000879 1.6e-11 72.8 93 51.6
Solyc12g017430.3 Solanum lycopersicum HOM05D000291 ORTHO05D000879 1.6e-11 72.8 54 66.7
Thecc.09G185800 Theobroma cacao HOM05D000291 ORTHO05D000879 2.1e-11 72.4 93 53.8
Lj4g0023693 Lotus japonicus HOM05D000291 ORTHO05D000879 3.6e-11 71.6 54 72.2
Nitab4.5_0000007g0370 Nicotiana tabacum HOM05D000291 ORTHO05D000879 3.6e-11 71.6 98 48.0
Dinv41173 Davidia involucrata HOM05D000291 ORTHO05D000879 4.7e-11 71.2 91 53.8
Hma1.2p1_1326F.1_g275810 Hydrangea macrophylla HOM05D000291 ORTHO05D000879 4.7e-11 71.2 83 57.8
PGSC0003DMG400009667 Solanum tuberosum HOM05D000291 ORTHO05D000879 6.1e-11 70.9 93 48.4
CAN.G67.5 Capsicum annuum HOM05D000291 ORTHO05D000879 1.0e-10 70.1 98 46.9
CiPaw.07G196800 Carya illinoinensis HOM05D000291 ORTHO05D000879 1.0e-10 70.1 78 60.3
Haze_22017 Corylus avellana HOM05D000291 ORTHO05D000879 1.0e-10 70.1 85 55.3
Glyma.17G059500 Glycine max HOM05D000291 ORTHO05D000879 1.8e-10 69.3 49 77.6
ClCG11G011780 Citrullus lanatus HOM05D000291 ORTHO05D000879 4.0e-10 68.2 80 60.0
Ca_21253_v3 Cicer arietinum L. HOM05D000291 ORTHO05D000879 6.8e-10 67.4 50 72.0
Cc00_g20360 Coffea canephora HOM05D000291 ORTHO05D000879 6.8e-10 67.4 87 51.7
TWI63G0722 Tripterygium wilfordii HOM05D000291 ORTHO05D000879 6.8e-10 67.4 88 52.3
CSS0022651 Camellia sinensis var. sinensis HOM05D000291 ORTHO05D000879 1.2e-09 66.6 102 46.1
QL02p046816 Quercus lobata HOM05D000291 ORTHO05D000879 1.2e-09 66.6 82 54.9
TAR383G0754 Trochodendron aralioides HOM05D000291 ORTHO05D000879 1.2e-09 66.6 97 45.4
Atru.chr7.758 Acer truncatum HOM05D000291 ORTHO05D000879 1.5e-09 66.2 77 53.2
Atru.chr7.780 Acer truncatum HOM05D000291 ORTHO05D000879 1.5e-09 66.2 77 53.2
Lalb_Chr13g0300021 Lupinus albus HOM05D000291 ORTHO05D000879 1.5e-09 66.2 51 74.5
Duzib150G0075 Durio zibethinus HOM05D000291 ORTHO05D000879 2.0e-09 65.9 92 50.0
Lalb_Chr11g0074781 Lupinus albus HOM05D000291 ORTHO05D000879 2.0e-09 65.9 52 69.2
Psat1g145640 Pisum sativum HOM05D000291 ORTHO05D000879 2.0e-09 65.9 41 80.5
COL.COLO4_07058 Corchorus olitorius HOM05D000291 ORTHO05D000879 2.6e-09 65.5 80 53.8
Nitab4.5_0001995g0060 Nicotiana tabacum HOM05D000291 ORTHO05D000879 3.4e-09 65.1 97 43.3
Gohir.A05G002400 Gossypium hirsutum HOM05D000291 ORTHO05D000879 5.7e-09 64.3 94 43.6
TPR.G5434 Trifolium pratense HOM05D000291 ORTHO05D000879 7.5e-09 63.9 108 41.7
Glyma.15G165800 Glycine max HOM05D000291 ORTHO05D000879 9.8e-09 63.5 40 85.0
Psat4g013400 Pisum sativum HOM05D000291 ORTHO05D000879 9.8e-09 63.5 44 72.7
CsaV3_2G008710 Cucumis sativus L. HOM05D000291 ORTHO05D000879 1.3e-08 63.2 81 53.1
Gorai.009G002600 Gossypium raimondii HOM05D000291 ORTHO05D000879 1.3e-08 63.2 54 61.1
MD16G1249100 Malus domestica HOM05D000291 ORTHO05D000879 2.2e-08 62.4 44 77.3
Oeu055539.1 Olea europaea HOM05D000291 ORTHO05D000879 2.2e-08 62.4 45 71.1
Eucgr.C02326 Eucalyptus grandis HOM05D000291 ORTHO05D000879 3.7e-08 61.6 38 81.6
Medtr4g127440 Medicago truncatula HOM05D000291 ORTHO05D000879 3.7e-08 61.6 48 66.7
TPR.G9000 Trifolium pratense HOM05D000291 ORTHO05D000879 4.9e-08 61.2 45 71.1
Lj6g0024154 Lotus japonicus HOM05D000291 ORTHO05D000879 6.3e-08 60.8 40 80.0
VMungo1309G2753 Vigna mungo HOM05D000291 ORTHO05D000879 6.3e-08 60.8 55 67.3
MSTRG.19374 Avicennia marina HOM05D000291 ORTHO05D000879 8.3e-08 60.5 97 40.2
TWI34G0787 Tripterygium wilfordii HOM05D000291 ORTHO05D000879 8.3e-08 60.5 88 48.9
Peaxi162Scf00006g02414 Petunia axillaris HOM05D000291 ORTHO05D000879 1.4e-07 59.7 101 40.6
PGR044G0232 Punica granatum HOM05D000291 ORTHO05D000879 1.4e-07 59.7 47 74.5
Sc14g0001450 Simmondsia chinensis HOM05D000291 ORTHO05D000879 2.4e-07 58.9 90 45.6
Gohir.D05G003000 Gossypium hirsutum HOM05D000291 ORTHO05D000879 3.1e-07 58.5 53 58.5
MD13G1242200 Malus domestica HOM05D000291 ORTHO05D000879 3.1e-07 58.5 90 43.3
Aa31LG3G13100 Aethionema arabicum HOM05D000291 ORTHO05D000879 4.1e-07 58.2 45 71.1
Ah.09g230230 Amaranthus hybridus HOM05D000291 ORTHO05D000879 5.4e-07 57.8 38 78.9
A02p08660 Brassica napus HOM05D000291 ORTHO05D000879 7.0e-07 57.4 45 71.1
BraA02t05936Z Brassica rapa HOM05D000291 ORTHO05D000879 7.0e-07 57.4 45 71.1
MELO3C003976.2 Cucumis melo HOM05D000291 ORTHO05D000879 7.0e-07 57.4 79 49.4
Glyma.09G059500 Glycine max HOM05D000291 ORTHO05D000879 7.0e-07 57.4 44 72.7
Phvul.009G236300 Phaseolus vulgaris HOM05D000291 ORTHO05D000879 9.2e-07 57.0 38 81.6
Prupe.1G075800 Prunus persica HOM05D000291 ORTHO05D000879 9.2e-07 57.0 40 77.5
CANSAT11G2052 Cannabis sativa HOM05D000291 ORTHO05D000879 1.2e-06 56.6 48 66.7
CARHR270990 Cardamine hirsuta HOM05D000291 ORTHO05D000879 1.2e-06 56.6 42 71.4
ATR0626G108 Amborella trichopoda HOM05D000291 ORTHO05D000879 1.6e-06 56.2 77 46.8
Thhalv10013043m.g Eutrema salsugineum HOM05D000291 ORTHO05D000879 1.6e-06 56.2 42 71.4
FAN07G2671 Fragaria x ananassa HOM05D000291 ORTHO05D000879 1.6e-06 56.2 41 75.6
FAN17G1456 Fragaria x ananassa HOM05D000291 ORTHO05D000879 1.6e-06 56.2 41 75.6
FAN22G1254 Fragaria x ananassa HOM05D000291 ORTHO05D000879 1.6e-06 56.2 41 75.6
MBI13_g34039_MAGBIO Magnolia biondii HOM05D000291 ORTHO05D000879 1.6e-06 56.2 40 75.0
arahy.Tifrunner.gnm1.ann1.W857VY Arachis hypogaea HOM05D000291 ORTHO05D000879 2.0e-06 55.8 51 68.6
BcaB08g36078 Brassica carinata HOM05D000291 ORTHO05D000879 2.0e-06 55.8 42 71.4
CAN.G306.5 Capsicum annuum HOM05D000291 ORTHO05D000879 2.0e-06 55.8 95 42.1
A10p14590 Brassica napus HOM05D000291 ORTHO05D000879 2.7e-06 55.5 42 71.4
BraA10t43546Z Brassica rapa HOM05D000291 ORTHO05D000879 2.7e-06 55.5 42 71.4
Manes.14G158100 Manihot esculenta HOM05D000291 ORTHO05D000879 2.7e-06 55.5 44 75.0
Nitab4.5_0000018g0040 Nicotiana tabacum HOM05D000291 ORTHO05D000879 2.7e-06 55.5 101 40.6
Nitab4.5_0001835g0010 Nicotiana tabacum HOM05D000291 ORTHO05D000879 2.7e-06 55.5 101 40.6
Peaxi162Scf00124g00044 Petunia axillaris HOM05D000291 ORTHO05D000879 2.7e-06 55.5 89 42.7
Hund09060 Selenicereus undatus HOM05D000291 ORTHO05D000879 2.7e-06 55.5 38 78.9
MSTRG.26543 Avicennia marina HOM05D000291 ORTHO05D000879 3.5e-06 55.1 89 43.8
Carub.0008s1771 Capsella rubella HOM05D000291 ORTHO05D000879 3.5e-06 55.1 42 69.0
Aqoxy7G02793 Aquilegia oxysepala HOM05D000291 ORTHO05D000879 4.5e-06 54.7 75 48.0
Sc18g0004190 Simmondsia chinensis HOM05D000291 ORTHO05D000879 4.5e-06 54.7 58 55.2
THA.LOC104817777 Tarenaya hassleriana HOM05D000291 ORTHO05D000879 4.5e-06 54.7 35 77.1
arahy.Tifrunner.gnm1.ann1.M14RRE Arachis hypogaea HOM05D000291 ORTHO05D000879 5.9e-06 54.3 51 66.7
Sp6g18930 Schrenkiella parvula HOM05D000291 ORTHO05D000879 5.9e-06 54.3 42 69.0
THA.LOC104811775 Tarenaya hassleriana HOM05D000291 ORTHO05D000879 5.9e-06 54.3 45 66.7
Nn8g40788 Nelumbo nucifera HOM05D000291 ORTHO05D000879 7.8e-06 53.9 86 45.3
PSO063G1003 Papaver somniferum HOM05D000291 ORTHO05D000879 7.8e-06 53.9 38 78.9
PSO170G1249 Papaver somniferum HOM05D000291 ORTHO05D000879 7.8e-06 53.9 38 78.9


User provided reference genes

Program Settings