Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 0.0e+00 1322.0 657 100.0
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.0e-310 1068.5 687 81.5
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 3.3e-249 865.1 666 67.3
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 2.7e-246 855.5 697 65.7
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 4.7e-243 844.7 725 63.3
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 1.0e-237 827.0 694 61.8
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 9.5e-236 820.5 689 62.0
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 5.2e-226 788.1 698 59.0
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 2.4e-223 779.2 699 58.7
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 5.4e-223 778.1 687 58.7
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 3.5e-222 775.4 684 58.5
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 1.5e-220 770.0 691 58.3
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 1.5e-220 770.0 692 58.4
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 4.3e-220 768.5 684 57.5
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 2.1e-219 766.1 702 58.4
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 2.3e-218 762.7 699 57.2
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 4.0e-218 761.9 691 57.6
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 5.2e-218 761.5 692 56.8
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 8.9e-218 760.8 684 57.3
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 1.5e-217 760.0 689 56.7
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 1.5e-217 760.0 695 58.1
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 1.7e-216 756.5 693 57.9
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 2.2e-216 756.1 693 55.0
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 2.9e-216 755.7 684 57.6
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 8.3e-216 754.2 688 56.1
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 6.0e-214 748.0 702 56.8
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 1.7e-213 746.5 710 56.6
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 1.4e-210 736.9 694 56.1
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 1.2e-209 733.8 702 55.3
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 2.0e-209 733.0 710 54.6
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 6.4e-208 728.0 695 53.2
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 1.1e-207 727.2 643 57.4
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 7.1e-207 724.5 694 55.8
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 6.0e-206 721.5 689 55.4
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 2.3e-205 719.5 689 55.4
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 7.6e-201 704.5 711 53.4
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 2.9e-200 702.6 848 47.9
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 4.1e-199 698.7 688 54.4
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.7e-197 693.3 691 53.8
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 2.3e-197 693.0 698 53.3
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 1.2e-195 687.2 707 53.0
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 3.6e-195 685.6 693 52.5
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 8.1e-195 684.5 715 53.1
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 8.1e-195 684.5 737 51.0
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 1.4e-194 683.7 704 51.4
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 1.2e-193 680.6 700 53.6
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 7.6e-193 677.9 685 52.6
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 4.9e-192 675.2 708 50.3
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 1.4e-191 673.7 708 53.4
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 1.4e-191 673.7 696 53.3
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 2.4e-191 672.9 693 51.7
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 7.1e-191 671.4 687 51.7
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 7.8e-190 667.9 690 53.3
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 8.7e-189 664.5 704 51.8
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 1.5e-188 663.7 709 52.3
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 2.5e-188 662.9 706 51.7
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 5.6e-188 661.8 706 51.8
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 6.9e-186 654.8 705 50.4
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 1.5e-185 653.7 693 51.4
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 2.7e-182 642.9 710 48.9
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 1.0e-181 641.0 707 50.6
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 2.3e-181 639.8 690 50.0
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 6.7e-181 638.3 721 48.1
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 5.6e-180 635.2 693 49.6
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 7.4e-180 634.8 693 48.6
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 1.6e-179 633.6 599 55.8
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 3.7e-179 632.5 702 48.9
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 4.0e-178 629.0 706 48.6
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 3.4e-177 625.9 692 49.3
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 1.3e-176 624.0 707 47.9
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 2.4e-175 619.8 762 45.4
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 7.1e-175 618.2 690 50.6
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 7.9e-174 614.8 705 49.2
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 8.7e-173 611.3 734 46.5
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 3.7e-171 605.9 694 48.1
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 1.7e-168 597.0 698 47.7
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 8.4e-168 594.7 378 77.8
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 6.0e-166 588.6 690 47.1
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 8.7e-165 584.7 728 45.9
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 5.7e-164 582.0 646 49.4
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 8.2e-163 578.2 652 48.0
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 6.9e-162 575.1 655 48.4
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 4.2e-159 565.8 693 44.4
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 3.2e-151 539.7 718 43.7
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 3.1e-146 523.1 753 42.2
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 1.2e-142 511.1 546 52.6
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 1.6e-142 510.8 666 45.0
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 5.2e-141 505.8 550 49.1
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 2.6e-137 493.4 425 61.2
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 5.9e-129 465.7 628 43.5
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 1.2e-126 458.0 473 53.1
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 2.1e-126 457.2 684 39.0
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 9.8e-124 448.4 451 52.5
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 2.1e-118 430.6 453 51.0
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 1.5e-103 381.3 647 37.6
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 1.9e-98 364.4 471 48.4
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 3.6e-94 350.1 594 34.5
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 4.1e-90 336.7 256 60.5
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 1.1e-87 328.6 263 67.7
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 8.1e-86 322.4 496 37.5
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.1e-85 320.5 206 81.6
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 3.2e-66 257.3 321 48.0
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.4e-63 246.1 347 38.0
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 1.2e-60 238.8 273 50.9
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 7.6e-60 236.1 250 48.0
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 6.4e-59 233.0 216 56.0
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 6.9e-53 213.0 250 44.4
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 1.3e-51 208.8 182 58.8
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 2.5e-50 204.5 286 43.7
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 6.3e-46 189.9 148 64.2
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.2e-41 175.6 87 98.9
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 2.7e-41 174.5 494 30.4
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.6e-41 173.7 87 97.7
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.0e-40 172.6 87 96.6
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 8.8e-40 169.5 159 53.5
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.8e-38 163.7 339 30.4
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.4e-36 157.5 87 92.0
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 5.9e-36 156.8 131 63.4
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 1.1e-34 152.5 220 41.8
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.5e-31 142.1 280 32.5
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.6e-31 141.4 188 41.5
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.3e-31 141.0 327 30.0
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.0e-28 131.7 87 79.3
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 5.9e-28 130.2 149 50.3
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 1.3e-27 129.0 88 67.0
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 4.7e-25 120.6 141 44.7
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.3e-24 118.2 327 27.8
PRCOL_00003726 Prasinoderma coloniale HOM05D004701 ORTHO05D005220 2.0e-23 115.2 317 28.4
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 9.7e-23 112.8 329 29.5
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 1.1e-21 109.4 104 56.7
Cre02.g118450 Chlamydomonas reinhardtii HOM05D004701 ORTHO05D005220 3.1e-21 107.8 354 28.8
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 9.1e-21 106.3 310 28.4
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 7.7e-20 103.2 138 43.5
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.2e-19 101.7 157 38.2
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.5e-19 100.1 278 27.0
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 7.2e-18 96.7 129 48.1
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 6.1e-17 93.6 91 53.8
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.2e-16 90.5 138 34.1
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 8.8e-16 89.7 227 27.8
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.6e-15 88.2 136 36.8
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 3.3e-15 87.8 136 42.6
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 4.4e-15 87.4 84 52.4
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 1.3e-14 85.9 407 24.8
Cpa.g.sc3599.1 Carica papaya HOM05D004701 ORTHO05D005220 2.2e-14 85.1 63 63.5
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.8e-13 82.0 212 29.7
Oeu052444.1 Olea europaea HOM05D004701 ORTHO05D005220 4.1e-13 80.9 61 60.7
CSS0003823 Camellia sinensis var. sinensis HOM05D024634 ORTHO05D005220 5.3e-13 80.5 43 93.0
CSS0007257 Camellia sinensis var. sinensis HOM05D039489 ORTHO05D005220 5.3e-13 80.5 46 87.0
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.3e-13 80.5 173 32.9
CSS0018695 Camellia sinensis var. sinensis HOM05D039489 ORTHO05D005220 1.6e-12 79.0 46 87.0
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 3.5e-12 77.8 77 53.2
CSS0005932 Camellia sinensis var. sinensis HOM05D039489 ORTHO05D005220 1.3e-11 75.9 46 84.8
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 1.9e-10 72.0 50 64.0
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 4.2e-10 70.9 85 48.2
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 5.5e-10 70.5 64 48.4
CSS0043058 Camellia sinensis var. sinensis HOM05D024634 ORTHO05D005220 6.1e-09 67.0 56 66.1
CSS0002301 Camellia sinensis var. sinensis HOM05D024634 ORTHO05D005220 1.8e-08 65.5 45 77.8
CSS0016116 Camellia sinensis var. sinensis HOM05D024634 ORTHO05D005220 8.8e-08 63.2 45 75.6
CSS0038998 Camellia sinensis var. sinensis HOM05D024634 ORTHO05D005220 1.5e-07 62.4 45 75.6
SMO009G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.0e-07 62.0 153 28.8
SMO286G0021 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 9.8e-07 59.7 115 29.6
MELO3C028766.2 Cucumis melo HOM05D001162 ORTHO05D022475 1.3e-06 59.3 46 54.3
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 1.7e-06 58.9 45 62.2


User provided reference genes

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