Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 0.0e+00 1438.3 736 100.0
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 9.1e-288 993.4 753 69.6
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 1.0e-270 936.8 737 67.7
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 3.0e-222 775.8 728 59.1
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 3.5e-215 752.3 742 57.0
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 1.1e-213 747.3 743 56.4
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 4.8e-212 741.9 746 56.7
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 1.1e-211 740.7 759 55.3
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 1.3e-209 733.8 738 54.9
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 5.0e-209 731.9 739 56.4
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 2.8e-204 716.1 752 54.0
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 9.0e-203 711.1 733 58.7
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 2.0e-202 709.9 754 54.8
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 3.4e-202 709.1 736 53.3
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 5.5e-200 701.8 751 53.0
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 1.6e-199 700.3 732 53.0
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 1.3e-196 690.6 750 52.5
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 2.4e-195 686.4 754 52.8
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 2.9e-193 679.5 755 52.6
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 4.2e-192 675.6 765 52.4
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 7.9e-191 671.4 744 51.9
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 3.9e-190 669.1 754 52.3
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 5.1e-190 668.7 750 51.9
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 8.8e-190 667.9 727 52.4
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.1e-189 667.5 754 52.0
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 1.5e-189 667.2 750 51.5
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 3.7e-188 662.5 755 51.5
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 2.4e-187 659.8 752 50.5
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 7.0e-187 658.3 725 51.2
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 2.0e-186 656.8 753 51.3
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 2.6e-186 656.4 754 51.3
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 3.5e-186 656.0 779 49.3
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.0e-185 654.4 754 51.2
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 2.0e-181 640.2 757 49.9
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 9.7e-181 637.9 675 54.5
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 4.8e-180 635.6 757 49.7
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 1.8e-179 633.6 737 49.7
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 1.0e-177 627.9 750 49.5
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 1.5e-176 624.0 736 49.2
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 2.5e-176 623.2 744 49.9
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 5.5e-176 622.1 725 49.4
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 5.5e-176 622.1 748 49.3
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 1.2e-175 620.9 742 48.8
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 6.1e-175 618.6 748 49.2
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 6.8e-174 615.1 764 49.7
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 1.8e-171 607.1 704 50.4
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 2.4e-171 606.7 745 49.0
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 6.5e-169 598.6 757 47.0
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 8.5e-169 598.2 740 47.8
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 1.9e-168 597.0 651 52.4
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 3.2e-168 596.3 750 46.7
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 3.6e-167 592.8 716 48.3
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 1.4e-166 590.9 764 45.2
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 5.2e-166 589.0 736 46.6
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 9.8e-165 584.7 752 46.9
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 1.4e-163 580.9 747 47.9
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 3.8e-161 572.8 750 46.9
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 5.6e-160 568.9 761 47.0
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 7.3e-160 568.5 757 46.1
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 7.3e-160 568.5 719 47.8
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 3.6e-159 566.2 734 46.2
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 4.7e-159 565.8 723 46.6
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 6.1e-159 565.5 757 47.8
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 4.0e-158 562.8 743 45.6
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 5.7e-157 558.9 739 45.9
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 1.3e-156 557.8 736 46.6
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 4.6e-154 549.3 776 44.7
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 4.6e-154 549.3 776 44.7
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 2.1e-151 540.4 743 47.1
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 3.1e-150 536.6 755 43.7
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 8.3e-148 528.5 805 43.5
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 2.7e-146 523.5 610 49.3
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 5.8e-141 505.8 837 41.3
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 1.5e-136 491.1 741 44.8
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 1.7e-124 451.1 554 47.8
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 6.0e-114 416.0 263 80.2
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 6.7e-105 386.0 771 37.6
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 3.1e-102 377.1 507 47.7
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 3.7e-95 353.6 333 58.6
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 4.2e-91 340.1 241 72.2
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 2.1e-90 337.8 387 51.4
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 1.0e-84 318.9 624 36.5
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 3.6e-82 310.5 327 52.6
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 1.3e-79 302.0 295 54.9
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 5.0e-76 290.0 270 56.3
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 3.2e-59 234.2 267 51.3
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 2.7e-58 231.1 249 50.2
Atru.chr10.1928 Acer truncatum HOM05D007576 ORTHO05D009576 2.8e-50 204.5 340 39.7
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 6.8e-49 199.9 158 65.8
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 2.2e-47 194.9 157 63.1
Solyc02g078470.4 Solanum lycopersicum HOM05D007576 ORTHO05D009576 4.1e-30 137.5 100 69.0
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 4.6e-29 134.0 202 41.6
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 2.3e-28 131.7 186 41.9
ECA247G2871 Erigeron canadensis HOM05D000526 ORTHO05D000956 5.6e-19 100.5 80 63.8
MELO3C003884.2 Cucumis melo HOM05D007576 ORTHO05D009576 2.1e-18 98.6 155 41.3
SEGI_32076 Sequoiadendron giganteum HOM05D007576 ORTHO05D009576 6.2e-18 97.1 84 56.0
Atru.chr10.1920 Acer truncatum HOM05D007576 ORTHO05D009576 1.1e-14 86.3 84 51.2
Cre13.g589167 Chlamydomonas reinhardtii HOM05D007576 ORTHO05D009576 3.5e-13 81.3 243 28.4
QL05p034837 Quercus lobata HOM05D007576 ORTHO05D009576 5.6e-11 73.9 74 50.0
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 1.9e-06 58.9 123 32.5


User provided reference genes

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