Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 0.0e+00 1108.2 573 100.0
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 0.0e+00 1104.4 573 99.7
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.8e-262 909.1 572 83.7
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 1.6e-260 902.5 575 82.8
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 5.7e-253 877.5 604 78.0
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 2.9e-249 865.1 573 78.4
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 2.4e-227 792.3 571 74.3
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 2.5e-224 782.3 569 72.6
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 3.2e-224 781.9 507 80.5
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 5.2e-222 774.6 564 70.7
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 5.7e-221 771.2 572 72.6
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 2.4e-219 765.8 572 70.8
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 4.1e-219 765.0 566 71.7
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 2.7e-218 762.3 569 71.0
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 2.7e-218 762.3 569 69.4
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.3e-217 759.2 569 69.2
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 3.8e-217 758.4 565 70.1
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 9.5e-216 753.8 574 69.2
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 4.7e-215 751.5 565 70.3
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 6.1e-215 751.1 567 70.9
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 8.0e-215 750.7 572 69.9
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 1.0e-214 750.4 566 69.4
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 5.2e-214 748.0 567 69.7
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 6.8e-214 747.7 568 69.2
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 1.3e-212 743.4 571 70.2
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 1.1e-211 740.3 567 70.4
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 2.0e-210 736.1 577 68.3
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 1.0e-209 733.8 567 68.4
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.7e-209 733.0 574 68.1
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.7e-209 733.0 574 67.8
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 2.3e-209 732.6 570 69.3
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.0e-209 732.3 574 67.6
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 6.6e-209 731.1 571 68.8
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 3.3e-208 728.8 566 69.6
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 5.6e-208 728.0 567 68.4
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 7.3e-208 727.6 567 70.4
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.1e-206 723.8 574 67.1
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 1.1e-206 723.8 567 68.3
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 4.0e-206 721.8 567 68.1
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 4.0e-206 721.8 569 68.0
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 1.2e-205 720.3 567 69.0
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 5.8e-205 718.0 563 67.9
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 2.9e-204 715.7 567 68.1
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 2.7e-202 709.1 578 67.1
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 4.6e-202 708.4 499 71.1
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 7.8e-202 707.6 565 66.7
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 1.7e-201 706.4 567 67.0
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 2.3e-201 706.1 565 67.4
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 1.5e-200 703.4 568 66.4
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 3.3e-200 702.2 571 66.2
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 1.6e-199 699.9 569 66.3
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 2.1e-199 699.5 575 64.7
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 2.1e-199 699.5 527 71.3
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 4.7e-199 698.4 570 64.0
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 1.5e-197 693.3 573 65.4
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 2.6e-197 692.6 592 65.4
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 3.4e-197 692.2 573 63.9
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 7.5e-197 691.0 578 65.9
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 9.9e-197 690.6 585 65.0
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 2.2e-196 689.5 568 64.6
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 2.9e-196 689.1 576 63.7
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 8.3e-196 687.6 566 63.6
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 1.9e-195 686.4 570 64.7
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 1.9e-195 686.4 570 63.7
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 5.4e-195 684.9 564 65.4
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 1.2e-194 683.7 573 63.4
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 1.2e-194 683.7 570 63.3
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 2.7e-194 682.6 561 64.2
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 6.0e-194 681.4 561 64.0
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 1.0e-193 680.6 561 64.2
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 3.0e-193 679.1 572 63.3
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 3.9e-193 678.7 566 62.4
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 6.6e-193 677.9 573 62.3
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 8.6e-193 677.6 561 63.6
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 8.6e-193 677.6 561 63.6
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 1.5e-192 676.8 561 63.5
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 1.6e-191 673.3 595 61.0
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 2.1e-191 672.9 569 65.2
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 5.8e-189 664.8 475 73.7
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 9.9e-189 664.1 575 64.3
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 2.9e-188 662.5 608 62.3
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 4.6e-186 655.2 561 62.0
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 7.8e-186 654.4 575 65.0
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 1.3e-185 653.7 583 60.4
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 3.0e-185 652.5 601 61.9
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 1.1e-184 650.6 562 61.9
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 1.8e-182 643.3 483 70.4
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 1.5e-181 640.2 570 62.1
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 2.2e-180 636.3 588 59.0
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 5.4e-179 631.7 570 61.4
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 3.3e-176 622.5 567 62.3
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 1.2e-173 614.0 583 58.7
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 1.5e-173 613.6 505 65.9
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 1.7e-172 610.1 650 55.8
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 2.4e-171 606.3 513 62.8
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 1.2e-170 604.0 503 64.6
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 4.6e-170 602.1 461 67.9
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 8.1e-167 591.3 486 65.6
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 1.1e-166 590.9 575 59.5
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 4.2e-155 552.4 570 57.2
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 7.1e-155 551.6 533 55.2
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 5.1e-153 545.4 553 57.5
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 3.3e-152 542.7 590 56.3
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 1.4e-150 537.3 571 53.4
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 4.5e-149 532.3 474 60.8
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.2e-146 524.2 349 75.4
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 2.7e-146 523.1 513 55.4
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 9.7e-144 514.6 349 75.9
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.5e-141 507.3 340 78.8
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.4e-134 484.2 339 74.3
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 1.8e-134 483.8 403 66.3
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 1.5e-133 480.7 524 53.4
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 1.4e-121 441.0 492 51.2
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 7.5e-120 435.3 372 62.4
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 5.0e-116 422.5 243 90.9
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 8.3e-111 405.2 242 83.9
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 8.3e-111 405.2 242 83.9
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 2.5e-107 393.7 419 55.4
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 1.4e-105 387.9 305 63.6
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 2.3e-105 387.1 395 55.2
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 1.4e-102 377.9 234 79.9
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 1.6e-101 374.4 425 52.7
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 3.4e-96 356.7 192 94.8
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 5.8e-96 355.9 283 65.7
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 1.3e-95 354.8 412 52.4
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 9.8e-88 328.6 401 50.4
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 9.2e-86 322.0 379 53.6
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 7.3e-83 312.4 573 36.5
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 6.0e-77 292.7 159 89.3
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 3.0e-76 290.4 580 34.5
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 2.9e-63 247.3 143 85.3
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 8.4e-63 245.7 462 39.0
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.9e-62 244.6 143 88.8
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.5e-61 240.4 143 86.7
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 5.6e-59 233.0 198 65.2
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 2.4e-57 227.6 134 86.6
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.4e-56 223.8 128 88.3
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 8.7e-52 209.1 236 54.7
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-50 204.1 526 31.2
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 1.3e-42 178.7 500 30.8
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.5e-35 154.5 88 87.5
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.1e-33 149.1 162 53.1
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.0e-32 144.8 92 79.3
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 3.8e-31 140.6 174 46.0
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 7.2e-30 136.3 210 42.9
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.3e-26 125.6 122 54.9
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 4.2e-22 110.5 132 49.2
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 2.6e-19 101.3 252 29.0
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 3.7e-18 97.4 257 30.0
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.1e-17 94.4 52 88.5
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 5.3e-17 93.6 595 25.7
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 2.2e-15 88.2 45 91.1
MD00G1165500 Malus domestica HOM05D004776 ORTHO05D005777 4.2e-14 84.0 91 56.0
Peaxi162Scf00351g00526 Petunia axillaris HOM05D004776 ORTHO05D005777 5.7e-11 73.6 319 29.5
PRCOL_00000088 Prasinoderma coloniale HOM05D004776 ORTHO05D005777 1.5e-06 58.9 199 27.6
COL.COLO4_21805 Corchorus olitorius HOM05D000365 ORTHO05D000154 5.5e-06 57.0 32 87.5


User provided reference genes

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