Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005791 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 0.0e+00 1166.0 587 100.0
CSS0002619 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 0.0e+00 1164.1 587 99.8
Rhsim05G0085900 Rhododendron simsii HOM05D006107 ORTHO05D007455 6.6e-305 1050.0 583 90.1
Hma1.2p1_0474F.1_g160480 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 7.3e-296 1020.0 566 89.0
vmacro19505 Vaccinium macrocarpon HOM05D006107 ORTHO05D007455 9.2e-291 1003.0 686 76.2
QL11p035424 Quercus lobata HOM05D006107 ORTHO05D007455 1.2e-287 992.6 553 88.4
CsaV3_7G008530 Cucumis sativus L. HOM05D006107 ORTHO05D007455 2.8e-287 991.5 571 85.1
Lj5A210T89 Lonicera japonica HOM05D006107 ORTHO05D007455 2.3e-286 988.4 583 83.5
Atru.chr5.2684 Acer truncatum HOM05D006107 ORTHO05D007455 2.9e-284 981.5 553 87.0
TWI31G1484 Tripterygium wilfordii HOM05D006107 ORTHO05D007455 3.7e-284 981.1 566 86.0
Prupe.8G126800 Prunus persica HOM05D006107 ORTHO05D007455 1.1e-283 979.5 569 85.2
Sed0010263 Sechium edule HOM05D006107 ORTHO05D007455 1.9e-283 978.8 582 83.5
Sabra09G0076700 Salix brachista HOM05D006107 ORTHO05D007455 1.6e-282 975.7 583 83.2
ClCG02G006000 Citrullus lanatus HOM05D006107 ORTHO05D007455 2.1e-282 975.3 606 81.4
Potri.009G100800 Populus trichocarpa HOM05D006107 ORTHO05D007455 2.1e-282 975.3 567 85.0
GSVIVG01031728001 Vitis vinifera HOM05D006107 ORTHO05D007455 3.5e-282 974.5 545 87.9
FvH4_2g05870 Fragaria vesca HOM05D006107 ORTHO05D007455 8.6e-281 969.9 550 86.2
arahy.Tifrunner.gnm1.ann1.Q9TTL4 Arachis hypogaea HOM05D006107 ORTHO05D007455 1.5e-280 969.1 557 85.3
Lalb_Chr16g0384781 Lupinus albus HOM05D006107 ORTHO05D007455 3.3e-280 968.0 563 84.4
FAN20G2345 Fragaria x ananassa HOM05D006107 ORTHO05D007455 4.3e-280 967.6 546 86.6
FAN15G1599 Fragaria x ananassa HOM05D006107 ORTHO05D007455 7.3e-280 966.8 546 86.6
FAN24G1318 Fragaria x ananassa HOM05D006107 ORTHO05D007455 1.2e-279 966.1 550 86.0
MD05G1082300 Malus domestica HOM05D006107 ORTHO05D007455 3.6e-279 964.5 583 82.2
Thecc.02G102000 Theobroma cacao HOM05D006107 ORTHO05D007455 8.1e-279 963.4 568 83.6
Duzib132G0557 Durio zibethinus HOM05D006107 ORTHO05D007455 1.1e-278 963.0 568 82.9
PGR042G0079 Punica granatum HOM05D006107 ORTHO05D007455 1.8e-278 962.2 548 85.9
RcHm_v2.0_Chr6g0257681 Rosa chinensis HOM05D006107 ORTHO05D007455 4.0e-278 961.1 546 85.9
Gohir.A12G023600 Gossypium hirsutum HOM05D006107 ORTHO05D007455 1.2e-277 959.5 546 85.2
Peaxi162Scf00016g01935 Petunia axillaris HOM05D006107 ORTHO05D007455 4.4e-277 957.6 546 85.7
Ciclev10028103m.g Citrus clementina HOM05D006107 ORTHO05D007455 7.6e-277 956.8 557 84.6
Medtr4g085890 Medicago truncatula HOM05D006107 ORTHO05D007455 9.9e-277 956.4 563 84.0
Eucgr.G01434 Eucalyptus grandis HOM05D006107 ORTHO05D007455 3.7e-276 954.5 547 84.5
Gohir.D12G024200 Gossypium hirsutum HOM05D006107 ORTHO05D007455 4.9e-276 954.1 559 83.2
Gorai.008G024600 Gossypium raimondii HOM05D006107 ORTHO05D007455 6.4e-276 953.7 583 81.0
Dinv42164 Davidia involucrata HOM05D006107 ORTHO05D007455 5.4e-275 950.7 582 83.8
TAR376G0662 Trochodendron aralioides HOM05D006107 ORTHO05D007455 1.6e-274 949.1 583 80.6
Lj4g0016203 Lotus japonicus HOM05D006107 ORTHO05D007455 2.7e-274 948.3 547 85.0
SGA_v2.0_scaffold90G27632 Striga asiatica HOM05D006107 ORTHO05D007455 1.0e-273 946.4 571 82.0
Migut.B00356 Erythranthe guttata HOM05D006107 ORTHO05D007455 1.7e-273 945.7 572 81.6
TPR.G12695 Trifolium pratense HOM05D006107 ORTHO05D007455 1.7e-273 945.7 557 83.1
Psat7g125400 Pisum sativum HOM05D006107 ORTHO05D007455 3.0e-273 944.9 557 83.5
Haze_10087 Corylus avellana HOM05D006107 ORTHO05D007455 6.6e-273 943.7 547 85.7
VMungo0251G2128 Vigna mungo HOM05D006107 ORTHO05D007455 8.6e-273 943.3 525 87.6
arahy.Tifrunner.gnm1.ann1.H5D5IL Arachis hypogaea HOM05D006107 ORTHO05D007455 1.9e-272 942.2 583 80.8
Glyma.07G213500 Glycine max HOM05D006107 ORTHO05D007455 1.9e-272 942.2 525 87.0
Phvul.003G291600 Phaseolus vulgaris HOM05D006107 ORTHO05D007455 1.2e-271 939.5 522 87.7
RcHm_v2.0_Chr6g0257701 Rosa chinensis HOM05D006107 ORTHO05D007455 1.2e-271 939.5 547 83.5
Ca_18695_v3 Cicer arietinum L. HOM05D006107 ORTHO05D007455 1.6e-271 939.1 521 87.5
Glyma.02G131500 Glycine max HOM05D006107 ORTHO05D007455 1.4e-270 936.0 522 87.5
MBI03_g13479_MAGBIO Magnolia biondii HOM05D006107 ORTHO05D007455 3.1e-270 934.9 571 80.0
SalBow6G1673 Salvia bowleyana HOM05D006107 ORTHO05D007455 3.1e-270 934.9 547 83.9
Aqoxy6G01306 Aquilegia oxysepala HOM05D006107 ORTHO05D007455 4.0e-270 934.5 573 78.9
Cfa004529 Carpinus fangiana HOM05D006107 ORTHO05D007455 4.4e-269 931.0 508 89.6
THA.LOC104807265 Tarenaya hassleriana HOM05D006107 ORTHO05D007455 7.6e-269 930.2 548 81.6
ECA236G2832 Erigeron canadensis HOM05D006107 ORTHO05D007455 8.4e-268 926.8 541 82.4
Lsat_1_v5_gn_7_86820 Lactuca sativa HOM05D006107 ORTHO05D007455 1.1e-267 926.4 535 83.9
HanXRQChr11g0331361 Helianthus annuus HOM05D006107 ORTHO05D007455 1.4e-267 926.0 540 82.2
CANSAT25G2960 Cannabis sativa HOM05D006107 ORTHO05D007455 3.2e-267 924.9 544 82.9
CAN.G1041.37 Capsicum annuum HOM05D006107 ORTHO05D007455 4.2e-267 924.5 550 82.0
Sopen01g050230 Solanum pennellii HOM05D006107 ORTHO05D007455 5.4e-267 924.1 550 82.0
PSO675G2583 Papaver somniferum HOM05D006107 ORTHO05D007455 7.1e-267 923.7 548 81.8
Solyc01g108030.4 Solanum lycopersicum HOM05D006107 ORTHO05D007455 9.3e-267 923.3 550 82.0
Hund06173 Selenicereus undatus HOM05D006107 ORTHO05D007455 1.6e-266 922.5 548 81.9
BcaB03g11861 Brassica carinata HOM05D006107 ORTHO05D007455 3.5e-266 921.4 552 80.4
Nitab4.5_0018866g0010 Nicotiana tabacum HOM05D006107 ORTHO05D007455 1.3e-265 919.5 559 81.6
Cc02_g18880 Coffea canephora HOM05D006107 ORTHO05D007455 2.3e-265 918.7 521 86.6
Sc18g0004170 Simmondsia chinensis HOM05D006107 ORTHO05D007455 2.3e-265 918.7 551 81.3
A03p62570 Brassica napus HOM05D006107 ORTHO05D007455 3.9e-265 917.9 547 80.3
AT4G34030 Arabidopsis thaliana HOM05D006107 ORTHO05D007455 6.6e-265 917.1 549 80.0
COL.COLO4_32644 Corchorus olitorius HOM05D006107 ORTHO05D007455 1.5e-264 916.0 577 78.9
Thhalv10024753m.g Eutrema salsugineum HOM05D006107 ORTHO05D007455 1.5e-264 916.0 547 80.1
Aa31LG2G16450 Aethionema arabicum HOM05D006107 ORTHO05D007455 1.9e-264 915.6 550 80.2
AL7G17360 Arabidopsis lyrata HOM05D006107 ORTHO05D007455 1.9e-264 915.6 549 80.1
EL10Ac1g02230 Beta vulgaris HOM05D006107 ORTHO05D007455 1.9e-264 915.6 565 78.9
PSO541G4551 Papaver somniferum HOM05D006107 ORTHO05D007455 7.3e-264 913.7 584 77.6
Sp7g31760 Schrenkiella parvula HOM05D006107 ORTHO05D007455 1.6e-263 912.5 547 79.3
BraA08t33679Z Brassica rapa HOM05D006107 ORTHO05D007455 2.8e-263 911.8 552 79.5
C07p60130 Brassica napus HOM05D006107 ORTHO05D007455 8.1e-263 910.2 547 79.7
BolC7t46453H Brassica oleracea HOM05D006107 ORTHO05D007455 8.1e-263 910.2 547 79.7
Carub.0007s0637 Capsella rubella HOM05D006107 ORTHO05D007455 1.1e-262 909.8 547 78.8
A08p17180 Brassica napus HOM05D006107 ORTHO05D007455 1.8e-262 909.1 552 79.2
C03p86150 Brassica napus HOM05D006107 ORTHO05D007455 5.3e-262 907.5 547 79.7
BcaC01g00937 Brassica carinata HOM05D006107 ORTHO05D007455 9.0e-262 906.7 547 79.7
BolC3t20903H Brassica oleracea HOM05D006107 ORTHO05D007455 4.4e-261 904.4 547 79.5
DCAR_001629 Daucus carota HOM05D006107 ORTHO05D007455 5.8e-261 904.0 521 84.5
PGSC0003DMG400025888 Solanum tuberosum HOM05D006107 ORTHO05D007455 8.4e-260 900.2 521 83.9
AUR62035403 Chenopodium quinoa HOM05D006107 ORTHO05D007455 2.4e-259 898.7 597 74.5
HPP92_004071 Vanilla planifolia HOM05D006107 ORTHO05D007455 3.9e-257 891.3 544 79.0
Nitab4.5_0001428g0130 Nicotiana tabacum HOM05D006107 ORTHO05D007455 3.3e-256 888.3 546 79.9
ATR1126G046 Amborella trichopoda HOM05D006107 ORTHO05D007455 5.6e-256 887.5 552 79.0
Zm00001eb179170 Zea mays HOM05D006107 ORTHO05D007455 1.8e-254 882.5 540 78.7
BcaNung03357 Brassica carinata HOM05D006107 ORTHO05D007455 4.3e-248 861.3 547 76.4
CDE10G1185 Ceratophyllum demersum HOM05D006107 ORTHO05D007455 1.6e-247 859.4 542 77.3
unitig_21.g20740 Utricularia gibba HOM05D006107 ORTHO05D007455 4.8e-247 857.8 545 78.2
MELO3C018456.2 Cucumis melo HOM05D006107 ORTHO05D007455 4.2e-243 844.7 498 83.9
Oeu007292.2 Olea europaea HOM05D006107 ORTHO05D007455 7.9e-242 840.5 469 86.6
Nn5g30280 Nelumbo nucifera HOM05D006107 ORTHO05D007455 8.7e-241 837.0 468 87.0
Cpa.g.sc62.2 Carica papaya HOM05D006107 ORTHO05D007455 7.4e-240 833.9 495 83.4
Pp3c3_22750 Physcomitrium patens HOM05D006107 ORTHO05D007455 1.4e-238 829.7 542 74.5
Mapoly0009s0150 Marchantia polymorpha HOM05D006107 ORTHO05D007455 3.1e-238 828.6 557 72.7
FAN27G3033 Fragaria x ananassa HOM05D006107 ORTHO05D007455 1.5e-237 826.2 521 79.1
CiPaw.05G007100 Carya illinoinensis HOM05D006107 ORTHO05D007455 1.1e-235 820.1 439 91.3
AagrBONN_evm.TU.Sc2ySwM_368.3420 Anthoceros agrestis HOM05D006107 ORTHO05D007455 3.7e-231 805.1 544 72.1
CARHR242170 Cardamine hirsuta HOM05D006107 ORTHO05D007455 2.4e-230 802.4 468 81.0
Manes.07G078100 Manihot esculenta HOM05D006107 ORTHO05D007455 1.4e-227 793.1 443 88.0
SEGI_09747 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 3.7e-223 778.5 466 81.5
HPP92_004116 Vanilla planifolia HOM05D006107 ORTHO05D007455 1.0e-217 760.4 544 69.7
Actinidia17868 Actinidia chinensis HOM05D006107 ORTHO05D007455 8.8e-209 730.7 587 68.8
SMO174G0062 Selaginella moellendorffii HOM05D006107 ORTHO05D007455 3.5e-205 718.8 542 66.6
Cre03.g181200 Chlamydomonas reinhardtii HOM05D006107 ORTHO05D007455 6.5e-196 688.0 544 62.7
AUR62041887 Chenopodium quinoa HOM05D006107 ORTHO05D007455 1.3e-191 673.7 464 72.6
Haze_26655 Corylus avellana HOM05D006107 ORTHO05D007455 1.4e-169 600.5 556 54.9
PRCOL_00006414 Prasinoderma coloniale HOM05D006107 ORTHO05D007455 1.3e-167 594.0 527 57.9
Haze_27116 Corylus avellana HOM05D006107 ORTHO05D007455 1.6e-157 560.5 450 60.9
Haze_27030 Corylus avellana HOM05D006107 ORTHO05D007455 1.2e-154 550.8 520 54.8
Ah.00g000150 Amaranthus hybridus HOM05D006107 ORTHO05D007455 1.9e-142 510.4 332 75.9
Hma1.2p1_0474F.1_g160470 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 1.4e-134 484.2 279 85.3
Haze_26656 Corylus avellana HOM05D006107 ORTHO05D007455 6.1e-85 319.3 254 61.0
QL11p035444 Quercus lobata HOM05D006107 ORTHO05D007455 2.7e-80 303.9 158 92.4
CBR_g54985 Chara braunii HOM05D006107 ORTHO05D007455 9.5e-54 215.7 502 30.5
Medtr3g011860 Medicago truncatula HOM05D006107 ORTHO05D007455 1.6e-45 188.3 208 51.0
QL11p035447 Quercus lobata HOM05D006107 ORTHO05D007455 2.4e-33 147.9 90 81.1
Cfa025742 Carpinus fangiana HOM05D006107 ORTHO05D007455 7.3e-30 136.3 443 26.0
CARHR242160 Cardamine hirsuta HOM05D006107 ORTHO05D007455 1.0e-23 115.9 81 70.4
QL11p035449 Quercus lobata HOM05D006107 ORTHO05D007455 4.3e-22 110.5 65 78.5
SEGI_09117 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 6.4e-18 96.7 76 61.8
QL11p035429 Quercus lobata HOM05D006107 ORTHO05D007455 2.7e-08 64.7 47 68.1
MCO15G166 Micromonas commoda HOM05D003397 ORTHO05D004390 3.0e-07 61.2 437 21.1
Solyc01g108060.2 Solanum lycopersicum HOM05D006107 ORTHO05D007455 3.0e-07 61.2 30 90.0


User provided reference genes

Program Settings