Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005756 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 6.2e-169 597.4 315 100.0
Actinidia06831 Actinidia chinensis HOM05D000780 ORTHO05D009033 1.3e-129 466.8 312 79.8
CSS0024577 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 4.7e-124 448.4 248 96.4
Rhsim05G0170400 Rhododendron simsii HOM05D000780 ORTHO05D009033 8.0e-124 447.6 322 76.1
vmacro19978 Vaccinium macrocarpon HOM05D000780 ORTHO05D009033 1.0e-115 420.6 367 67.3
Hma1.2p1_0130F.1_g060510 Hydrangea macrophylla HOM05D000780 ORTHO05D009033 3.5e-111 405.6 314 72.3
MD12G1251900 Malus domestica HOM05D000780 ORTHO05D009033 9.5e-109 397.5 314 69.4
Ciclev10021307m.g Citrus clementina HOM05D000780 ORTHO05D009033 4.7e-108 395.2 317 70.3
Thecc.05G266300 Theobroma cacao HOM05D000780 ORTHO05D009033 4.7e-108 395.2 305 72.1
GSVIVG01026324001 Vitis vinifera HOM05D000780 ORTHO05D009033 8.0e-108 394.4 307 71.3
FvH4_6g01461 Fragaria vesca HOM05D000780 ORTHO05D009033 3.0e-107 392.5 316 69.6
RcHm_v2.0_Chr3g0449091 Rosa chinensis HOM05D000780 ORTHO05D009033 3.2e-104 382.5 316 67.4
Nn1g03021 Nelumbo nucifera HOM05D000780 ORTHO05D009033 9.2e-104 380.9 305 69.2
QL01p042200 Quercus lobata HOM05D000780 ORTHO05D009033 2.3e-102 376.3 318 67.6
Gohir.D13G172200 Gossypium hirsutum HOM05D000780 ORTHO05D009033 5.0e-102 375.2 311 67.5
Gohir.A13G161800 Gossypium hirsutum HOM05D000780 ORTHO05D009033 8.6e-102 374.4 311 67.5
Potri.019G023700 Populus trichocarpa HOM05D000780 ORTHO05D009033 8.6e-102 374.4 316 67.4
Gorai.013G188500 Gossypium raimondii HOM05D000780 ORTHO05D009033 1.5e-101 373.6 311 67.5
Atru.chr2.1117 Acer truncatum HOM05D000780 ORTHO05D009033 7.3e-101 371.3 317 68.5
TAR633G0111 Trochodendron aralioides HOM05D000780 ORTHO05D009033 1.2e-100 370.5 311 67.5
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 2.1e-100 369.8 311 67.5
Migut.F02052 Erythranthe guttata HOM05D000780 ORTHO05D009033 6.2e-100 368.2 311 68.5
Lsat_1_v5_gn_9_46781 Lactuca sativa HOM05D000780 ORTHO05D009033 1.8e-99 366.7 311 66.9
TWI34G1716 Tripterygium wilfordii HOM05D000780 ORTHO05D009033 6.8e-99 364.8 310 66.1
Aqoxy5G00106 Aquilegia oxysepala HOM05D000780 ORTHO05D009033 1.7e-97 360.1 315 64.4
CsaV3_1G045040 Cucumis sativus L. HOM05D000780 ORTHO05D009033 1.7e-97 360.1 315 66.7
PGR004G1412 Punica granatum HOM05D000780 ORTHO05D009033 2.9e-97 359.4 315 66.3
Glyma.20G221500 Glycine max HOM05D000780 ORTHO05D009033 4.9e-97 358.6 297 67.3
Solyc04g050470.4 Solanum lycopersicum HOM05D000780 ORTHO05D009033 1.1e-96 357.5 303 67.3
Carub.0007s3248 Capsella rubella HOM05D000780 ORTHO05D009033 1.9e-96 356.7 315 63.5
MBI10_g26046_MAGBIO Magnolia biondii HOM05D000780 ORTHO05D009033 2.7e-95 352.8 323 64.7
THA.LOC104821566 Tarenaya hassleriana HOM05D000780 ORTHO05D009033 2.7e-95 352.8 328 62.5
MSTRG.27431 Avicennia marina HOM05D000780 ORTHO05D009033 6.0e-95 351.7 316 64.6
Lj5g0019051 Lotus japonicus HOM05D000780 ORTHO05D009033 1.3e-94 350.5 315 64.8
CARHR215730 Cardamine hirsuta HOM05D000780 ORTHO05D009033 3.9e-94 349.0 319 62.4
Phvul.L002032 Phaseolus vulgaris HOM05D000780 ORTHO05D009033 5.0e-94 348.6 264 69.7
Eucgr.H04210 Eucalyptus grandis HOM05D000780 ORTHO05D009033 8.6e-94 347.8 317 64.0
Nitab4.5_0003148g0030 Nicotiana tabacum HOM05D000780 ORTHO05D009033 8.6e-94 347.8 301 65.4
arahy.Tifrunner.gnm1.ann1.ZAXM00 Arachis hypogaea HOM05D000780 ORTHO05D009033 1.9e-93 346.7 314 62.4
VMungo0720G1285 Vigna mungo HOM05D000780 ORTHO05D009033 1.9e-93 346.7 287 66.9
Manes.09G146600 Manihot esculenta HOM05D000780 ORTHO05D009033 2.5e-93 346.3 315 64.4
arahy.Tifrunner.gnm1.ann1.09X96J Arachis hypogaea HOM05D000780 ORTHO05D009033 7.3e-93 344.7 314 62.4
Sc24g0002520 Simmondsia chinensis HOM05D000780 ORTHO05D009033 7.3e-93 344.7 310 64.2
DCAR_030971 Daucus carota HOM05D000780 ORTHO05D009033 1.6e-92 343.6 308 64.9
AT5G37360 Arabidopsis thaliana HOM05D000780 ORTHO05D009033 8.1e-92 341.3 312 63.5
Ca_09986_v3 Cicer arietinum L. HOM05D000780 ORTHO05D009033 2.3e-91 339.7 304 61.8
AL7G45990 Arabidopsis lyrata HOM05D000780 ORTHO05D009033 5.2e-91 338.6 312 62.2
Thhalv10027857m.g Eutrema salsugineum HOM05D000780 ORTHO05D009033 6.8e-91 338.2 314 60.2
Ah.06g187930 Amaranthus hybridus HOM05D000780 ORTHO05D009033 2.0e-90 336.7 312 61.9
AUR62006989 Chenopodium quinoa HOM05D000780 ORTHO05D009033 2.0e-90 336.7 314 62.7
BraA04t16719Z Brassica rapa HOM05D000780 ORTHO05D009033 2.6e-90 336.3 314 60.8
FAN05G0905 Fragaria x ananassa HOM05D000780 ORTHO05D001132 2.6e-90 336.3 327 60.9
FAN14G4937 Fragaria x ananassa HOM05D000780 ORTHO05D001132 4.4e-90 335.5 327 60.6
Sp7g05110 Schrenkiella parvula HOM05D000780 ORTHO05D009033 4.4e-90 335.5 320 61.2
PSO210G3904 Papaver somniferum HOM05D000780 ORTHO05D009033 5.8e-90 335.1 296 63.2
Lalb_Chr21g0311301 Lupinus albus HOM05D000780 ORTHO05D009033 1.3e-89 334.0 312 61.2
Medtr1g079763 Medicago truncatula HOM05D000780 ORTHO05D009033 2.2e-89 333.2 305 61.0
FAN14G3828 Fragaria x ananassa HOM05D000780 ORTHO05D001132 2.9e-89 332.8 327 60.9
EL10Ac4g09771 Beta vulgaris HOM05D000780 ORTHO05D009033 3.7e-89 332.4 310 61.9
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 3.7e-89 332.4 310 60.3
Potri.013G050300 Populus trichocarpa HOM05D000780 ORTHO05D009033 4.9e-89 332.0 277 66.8
BcaC02g09559 Brassica carinata HOM05D000780 ORTHO05D009033 8.3e-89 331.3 314 61.5
C04p44170 Brassica napus HOM05D000780 ORTHO05D009033 8.3e-89 331.3 314 61.5
BolC4t25992H Brassica oleracea HOM05D000780 ORTHO05D009033 8.3e-89 331.3 314 61.5
FAN02G1432 Fragaria x ananassa HOM05D000780 ORTHO05D009033 8.3e-89 331.3 316 61.1
A04p10530 Brassica napus HOM05D000780 ORTHO05D009033 1.9e-88 330.1 321 60.7
ECA232G3479 Erigeron canadensis HOM05D000780 ORTHO05D009033 2.4e-88 329.7 290 63.8
Dinv01155 Davidia involucrata HOM05D000780 ORTHO05D009033 6.0e-87 325.1 211 81.0
Nitab4.5_0000841g0080 Nicotiana tabacum HOM05D000780 ORTHO05D009033 7.8e-87 324.7 305 63.3
Prupe.6G353000 Prunus persica HOM05D000780 ORTHO05D009033 7.8e-87 324.7 314 62.4
Hund07171 Selenicereus undatus HOM05D000780 ORTHO05D009033 1.0e-86 324.3 320 62.2
SalBow1G6873 Salvia bowleyana HOM05D000780 ORTHO05D009033 3.3e-85 319.3 300 62.0
Aa31LG9G18020 Aethionema arabicum HOM05D000780 ORTHO05D009033 4.3e-85 318.9 312 58.3
ClCG03G011490 Citrullus lanatus HOM05D000780 ORTHO05D009033 4.3e-85 318.9 315 61.3
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 1.2e-84 317.4 214 77.1
ATR0088G058 Amborella trichopoda HOM05D000780 ORTHO05D009033 1.6e-84 317.0 303 59.7
CANSAT54G0520 Cannabis sativa HOM05D000780 ORTHO05D009033 1.6e-84 317.0 307 61.2
SGA_v2.0_scaffold329G48830 Striga asiatica HOM05D002740 ORTHO05D003126 4.0e-83 312.4 332 57.8
unitig_37.g12284 Utricularia gibba HOM05D000780 ORTHO05D009033 3.4e-82 309.3 265 64.2
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 1.3e-81 307.4 229 70.3
MELO3C010086.2 Cucumis melo HOM05D000780 ORTHO05D009033 1.3e-81 307.4 280 64.6
Glyma.10G167600 Glycine max HOM05D000780 ORTHO05D009033 9.2e-80 301.2 313 57.5
SalBow1G5981 Salvia bowleyana HOM05D000780 ORTHO05D009033 9.2e-80 301.2 330 56.4
Haze_04472 Corylus avellana HOM05D000780 ORTHO05D009033 1.2e-79 300.8 309 61.2
Sabra19G0033700 Salix brachista HOM05D000780 ORTHO05D009033 2.3e-78 296.6 314 59.6
HanXRQChr05g0145151 Helianthus annuus HOM05D000780 ORTHO05D009033 3.9e-78 295.8 290 59.0
Peaxi162Scf00077g00138 Petunia axillaris HOM05D000780 ORTHO05D009033 3.9e-78 295.8 224 71.0
Os02g0815400 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D009033 1.9e-72 276.9 286 54.2
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 3.2e-72 276.2 298 54.4
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 4.2e-72 275.8 230 63.9
TPR.G10273 Trifolium pratense HOM05D000780 ORTHO05D009033 3.9e-70 269.2 329 52.9
Zm00001eb258750 Zea mays HOM05D000780 ORTHO05D009033 8.7e-70 268.1 310 50.6
Cpa.g.c33516 Carica papaya HOM05D000780 ORTHO05D009033 1.9e-69 266.9 188 73.9
CiPaw.07G074400 Carya illinoinensis HOM05D000780 ORTHO05D009033 6.2e-68 261.9 244 63.1
Eucgr.H04100 Eucalyptus grandis HOM05D000780 ORTHO05D009033 3.1e-59 233.0 222 60.8
Lj2A46G68 Lonicera japonica HOM05D000780 ORTHO05D009033 2.3e-54 216.9 163 70.6
Sed0013634 Sechium edule HOM05D000780 ORTHO05D009033 3.9e-54 216.1 335 46.9
MD12G1251000 Malus domestica HOM05D000072 ORTHO05D009033 1.5e-53 214.2 201 63.2
AagrBONN_evm.TU.Sc2ySwM_228.3981 Anthoceros agrestis HOM05D000780 ORTHO05D009033 2.1e-52 210.3 302 41.7
SMO172G0144 Selaginella moellendorffii HOM05D000780 ORTHO05D009033 1.2e-47 194.5 230 48.7
MD12G1250900 Malus domestica HOM05D000780 ORTHO05D009033 9.7e-45 184.9 165 65.5
Sopen04g021250 Solanum pennellii HOM05D000780 ORTHO05D009033 2.4e-43 180.3 135 70.4
Pp3c18_1300 Physcomitrium patens HOM05D000780 ORTHO05D009033 1.5e-42 177.6 328 38.1
CBR_g11120 Chara braunii HOM05D000780 ORTHO05D009033 2.5e-40 170.2 242 42.1
Cc09_g03030 Coffea canephora HOM05D000780 ORTHO05D009033 1.4e-38 164.5 120 70.8
FAN09G0636 Fragaria x ananassa HOM05D000780 ORTHO05D001132 1.9e-37 160.6 114 71.9
PGSC0003DMG402028709 Solanum tuberosum HOM05D000780 ORTHO05D009033 2.5e-37 160.2 120 70.8
HPP92_009056 Vanilla planifolia HOM05D001254 ORTHO05D001386 1.0e-33 148.3 190 47.9
Cc09_g03040 Coffea canephora HOM05D000780 ORTHO05D009033 1.3e-33 147.9 162 58.0
SEGI_21696 Sequoiadendron giganteum HOM05D000780 ORTHO05D009033 4.2e-32 142.9 169 47.9
SEGI_05244 Sequoiadendron giganteum HOM05D000780 ORTHO05D009033 7.9e-31 138.7 114 61.4
HPP92_009057 Vanilla planifolia HOM05D000780 ORTHO05D009033 1.0e-30 138.3 118 61.9
FAN11G0130 Fragaria x ananassa HOM05D000780 ORTHO05D009033 1.3e-28 131.3 244 41.0
Eucgr.H04102 Eucalyptus grandis HOM05D000780 ORTHO05D009033 1.7e-28 131.0 212 42.9
FAN05G5022 Fragaria x ananassa HOM05D000780 ORTHO05D009033 3.8e-25 119.8 121 60.3
PGSC0003DMG401028709 Solanum tuberosum HOM05D000780 ORTHO05D009033 1.5e-16 91.3 110 58.2
CAN.G4.37 Capsicum annuum HOM05D000780 ORTHO05D009033 2.5e-16 90.5 69 73.9
FAN14G1321 Fragaria x ananassa HOM05D000780 ORTHO05D009033 4.1e-11 73.2 107 44.9
FvH4_3g18300 Fragaria vesca HOM05D000780 ORTHO05D196851 1.0e-09 68.6 50 66.0
FAN18G1636 Fragaria x ananassa HOM05D000780 ORTHO05D009033 3.6e-07 60.1 60 58.3
FAN16G0199 Fragaria x ananassa HOM05D000780 ORTHO05D210745 4.0e-06 56.6 82 41.5


User provided reference genes

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