Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005750 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 6.0e-29 130.6 88 100.0
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 1.4e-25 119.4 81 100.0
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 1.5e-16 89.4 83 73.5
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 2.0e-16 89.0 81 69.1
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 4.5e-16 87.8 81 71.6
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 1.0e-15 86.7 81 72.8
vmacro23280 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 3.8e-15 84.7 86 72.1
vmacro05012 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 8.5e-15 83.6 86 70.9
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 4.2e-14 81.3 78 71.8
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 5.5e-14 80.9 82 54.9
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 5.5e-14 80.9 81 75.3
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 5.5e-14 80.9 85 70.6
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 7.2e-14 80.5 78 69.2
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 7.2e-14 80.5 82 73.2
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 9.4e-14 80.1 76 68.4
RhsimUnG0226800 Rhododendron simsii HOM05D006774 ORTHO05D008411 9.4e-14 80.1 87 71.3
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 1.2e-13 79.7 84 70.2
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 2.7e-13 78.6 80 68.8
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 2.7e-13 78.6 83 69.9
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 2.7e-13 78.6 80 72.5
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 2.7e-13 78.6 83 59.0
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 1.0e-12 76.6 80 67.5
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 1.4e-12 76.3 81 71.6
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 1.4e-12 76.3 80 68.8
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 1.8e-12 75.9 83 67.5
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 3.9e-12 74.7 81 74.1
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 8.8e-12 73.6 80 65.0
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 8.8e-12 73.6 78 71.8
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 1.1e-11 73.2 74 74.3
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 2.0e-11 72.4 77 66.2
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 2.0e-11 72.4 78 69.2
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 2.5e-11 72.0 78 64.1
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 5.7e-11 70.9 77 63.6
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 7.4e-11 70.5 93 49.5
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 7.4e-11 70.5 81 61.7
Oeu051834.1 Olea europaea HOM05D006774 ORTHO05D008411 7.4e-11 70.5 79 70.9
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 9.7e-11 70.1 77 59.7
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 1.3e-10 69.7 80 58.8
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 1.7e-10 69.3 76 48.7
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 2.8e-10 68.6 76 46.1
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 3.7e-10 68.2 83 57.8
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 6.3e-10 67.4 83 45.8
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 6.3e-10 67.4 80 61.2
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 1.1e-09 66.6 75 60.0
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 3.1e-09 65.1 85 60.0
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 3.1e-09 65.1 82 62.2
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 4.1e-09 64.7 80 60.0
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 4.1e-09 64.7 80 57.5
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 5.3e-09 64.3 78 64.1
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 5.3e-09 64.3 78 65.4
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 6.9e-09 63.9 85 55.3
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 9.1e-09 63.5 44 72.7
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 1.5e-08 62.8 81 46.9
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 2.0e-08 62.4 84 56.0
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 2.6e-08 62.0 77 54.5
TAR362G0529 Trochodendron aralioides HOM05D006774 ORTHO05D008411 3.4e-08 61.6 47 61.7
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 5.9e-08 60.8 47 66.0
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 7.7e-08 60.5 87 58.6
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 7.7e-08 60.5 82 43.9
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 7.7e-08 60.5 82 43.9
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 1.3e-07 59.7 78 60.3
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 2.2e-07 58.9 77 54.5
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 2.9e-07 58.5 77 55.8
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 2.9e-07 58.5 81 43.2
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 3.8e-07 58.2 74 60.8
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 3.8e-07 58.2 47 59.6
SEGI_31760 Sequoiadendron giganteum HOM05D006774 ORTHO05D008411 3.8e-07 58.2 75 65.3
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 5.0e-07 57.8 46 60.9
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 6.5e-07 57.4 81 53.1
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 8.5e-07 57.0 84 42.9
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.1e-06 56.6 45 60.0
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.1e-06 56.6 47 57.4
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 1.4e-06 56.2 47 55.3
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 2.5e-06 55.5 78 48.7
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 2.5e-06 55.5 43 60.5
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 4.2e-06 54.7 78 43.6
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 4.2e-06 54.7 82 57.3
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 7.2e-06 53.9 49 57.1


User provided reference genes

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