Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005747 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 1.7e-268 929.1 593 100.0
CSS0030192 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 5.5e-267 924.1 593 98.7
Dinv20199 Davidia involucrata HOM05D007892 ORTHO05D009211 1.3e-119 434.5 488 58.2
Rhsim06G0202400 Rhododendron simsii HOM05D007892 ORTHO05D009211 5.5e-118 429.1 483 59.0
Actinidia09702 Actinidia chinensis HOM05D007892 ORTHO05D009211 1.6e-109 401.0 548 57.5
Dinv14936 Davidia involucrata HOM05D007892 ORTHO05D009211 2.6e-107 393.7 552 56.3
vmacro11887 Vaccinium macrocarpon HOM05D007892 ORTHO05D009211 4.3e-102 376.3 561 56.5
Cfa020559 Carpinus fangiana HOM05D007892 ORTHO05D009211 1.6e-72 278.1 599 42.9
GSVIVG01014294001 Vitis vinifera HOM05D007892 ORTHO05D009211 1.3e-71 275.0 493 44.0
TAR626G1218 Trochodendron aralioides HOM05D007892 ORTHO05D009211 2.8e-69 267.3 576 39.8
Haze_09454 Corylus avellana HOM05D007892 ORTHO05D009211 1.8e-60 238.0 602 40.7
Prupe.4G176400 Prunus persica HOM05D007892 ORTHO05D009211 5.8e-59 233.0 514 40.1
FAN21G3246 Fragaria x ananassa HOM05D007892 ORTHO05D009211 9.9e-59 232.3 590 42.0
CiPaw.11G172000 Carya illinoinensis HOM05D007892 ORTHO05D009211 1.7e-58 231.5 588 38.1
FAN25G2763 Fragaria x ananassa HOM05D007892 ORTHO05D009211 3.8e-58 230.3 585 42.1
QL08p022727 Quercus lobata HOM05D007892 ORTHO05D009211 6.4e-58 229.6 644 39.8
FvH4_3g19480 Fragaria vesca HOM05D007892 ORTHO05D009211 7.9e-56 222.6 587 43.3
FAN11G1893 Fragaria x ananassa HOM05D007892 ORTHO05D009211 1.3e-55 221.9 507 39.4
FAN16G1540 Fragaria x ananassa HOM05D007892 ORTHO05D009211 1.3e-53 215.3 590 40.5
CANSAT56G4073 Cannabis sativa HOM05D007892 ORTHO05D009211 2.1e-53 214.5 493 38.7
MD03G1231500 Malus domestica HOM05D007892 ORTHO05D009211 1.4e-52 211.8 585 41.4
RcHm_v2.0_Chr5g0032741 Rosa chinensis HOM05D007892 ORTHO05D009211 6.9e-52 209.5 398 43.0
Thecc.07G095700 Theobroma cacao HOM05D007892 ORTHO05D009211 2.0e-51 208.0 556 36.9
TWI38G1391 Tripterygium wilfordii HOM05D007892 ORTHO05D009211 2.6e-51 207.6 598 35.5
Lj1A840G45 Lonicera japonica HOM05D007892 ORTHO05D009211 1.6e-48 198.4 477 38.6
Duzib213G0678 Durio zibethinus HOM05D007892 ORTHO05D009211 7.9e-48 196.1 579 34.5
Oeu037370.2 Olea europaea HOM05D007892 ORTHO05D009211 2.3e-47 194.5 467 36.8
Duzib244G0002 Durio zibethinus HOM05D007892 ORTHO05D009211 1.9e-46 191.4 702 35.3
Duzib268G0896 Durio zibethinus HOM05D007892 ORTHO05D009211 4.3e-46 190.3 683 32.5
Manes.15G089300 Manihot esculenta HOM05D007892 ORTHO05D009211 3.7e-45 187.2 617 35.0
Potri.011G115900 Populus trichocarpa HOM05D007892 ORTHO05D009211 2.4e-44 184.5 535 35.3
COL.COLO4_36713 Corchorus olitorius HOM05D007892 ORTHO05D009211 5.8e-43 179.9 553 35.6
MD11G1252600 Malus domestica HOM05D007892 ORTHO05D009211 2.2e-42 177.9 573 35.1
Glyma.12G226900 Glycine max HOM05D007892 ORTHO05D009211 2.9e-42 177.6 483 37.5
Nn1g06449 Nelumbo nucifera HOM05D007892 ORTHO05D009211 1.1e-41 175.6 477 36.3
Gorai.002G067800 Gossypium raimondii HOM05D007892 ORTHO05D009211 1.9e-41 174.9 534 34.1
Ciclev10007798m.g Citrus clementina HOM05D007892 ORTHO05D009211 2.1e-40 171.4 444 36.9
Gohir.D01G048000 Gossypium hirsutum HOM05D007892 ORTHO05D009211 4.6e-40 170.2 534 33.7
DCAR_019569 Daucus carota HOM05D007892 ORTHO05D009211 1.3e-37 162.2 435 37.9
Eucgr.F01161 Eucalyptus grandis HOM05D007892 ORTHO05D009211 1.3e-37 162.2 600 31.8
Lalb_Chr01g0016751 Lupinus albus HOM05D007892 ORTHO05D009211 1.3e-37 162.2 570 35.1
Sabra11G0101600 Salix brachista HOM05D007892 ORTHO05D009211 2.8e-37 161.0 651 33.6
MSTRG.6820 Avicennia marina HOM05D007892 ORTHO05D009211 3.7e-37 160.6 455 35.8
Ca_03530_v3 Cicer arietinum L. HOM05D007892 ORTHO05D009211 6.3e-37 159.8 576 31.2
Lj3g0007189 Lotus japonicus HOM05D007892 ORTHO05D009211 5.0e-34 150.2 568 32.6
Gohir.A01G061400 Gossypium hirsutum HOM05D007892 ORTHO05D009211 1.4e-33 148.7 470 32.6
Cc05_g11770 Coffea canephora HOM05D007892 ORTHO05D009211 4.2e-33 147.1 517 33.5
HanXRQChr11g0351991 Helianthus annuus HOM05D007892 ORTHO05D009211 2.1e-32 144.8 474 36.9
Medtr2g078660 Medicago truncatula HOM05D007892 ORTHO05D009211 4.6e-32 143.7 510 32.4
VMungo0331G1677 Vigna mungo HOM05D007892 ORTHO05D009211 1.8e-31 141.7 492 32.7
Sc03g0010140 Simmondsia chinensis HOM05D007892 ORTHO05D009211 3.0e-31 141.0 441 34.0
arahy.Tifrunner.gnm1.ann1.8Q202K Arachis hypogaea HOM05D007892 ORTHO05D009211 6.7e-31 139.8 572 33.0
Aqoxy1G02331 Aquilegia oxysepala HOM05D007892 ORTHO05D009211 2.0e-30 138.3 684 31.7
CsaV3_4G033500 Cucumis sativus L. HOM05D007892 ORTHO05D009211 6.9e-28 129.8 474 33.8
PGSC0003DMG403012406 Solanum tuberosum HOM05D021138 ORTHO05D009211 1.2e-27 129.0 509 32.4
Sopen07g031110 Solanum pennellii HOM05D021138 ORTHO05D009211 1.5e-27 128.6 506 31.2
Atru.chr2.2419 Acer truncatum HOM05D007892 ORTHO05D009211 4.5e-27 127.1 346 36.1
Phvul.010G112300 Phaseolus vulgaris HOM05D007892 ORTHO05D009211 1.3e-26 125.6 476 31.3
Glyma.13G273900 Glycine max HOM05D007892 ORTHO05D009211 2.9e-26 124.4 577 34.5
Solyc07g062920.4 Solanum lycopersicum HOM05D021138 ORTHO05D009211 2.9e-26 124.4 506 31.6
Nitab4.5_0002330g0130 Nicotiana tabacum HOM05D021138 ORTHO05D009211 8.5e-26 122.9 480 33.1
ClCG11G017870 Citrullus lanatus HOM05D007892 ORTHO05D009211 1.9e-25 121.7 500 32.8
AUR62036164 Chenopodium quinoa HOM05D007892 ORTHO05D009211 6.1e-24 116.7 446 31.8
Sed0012696 Sechium edule HOM05D007892 ORTHO05D009211 2.3e-23 114.8 502 32.1
AUR62019468 Chenopodium quinoa HOM05D007892 ORTHO05D009211 3.0e-23 114.4 475 31.4
Hund22811 Selenicereus undatus HOM05D007892 ORTHO05D009211 4.4e-22 110.5 568 32.7
Potri.001G397001 Populus trichocarpa HOM05D007892 ORTHO05D009211 1.7e-21 108.6 481 31.0
Peaxi162Scf00069g01735 Petunia axillaris HOM05D021138 ORTHO05D009211 4.8e-21 107.1 455 32.7
EL10Ac4g08232 Beta vulgaris HOM05D007892 ORTHO05D009211 2.0e-19 101.7 444 32.2
Ah.06g184550 Amaranthus hybridus HOM05D007892 ORTHO05D009211 5.9e-19 100.1 451 32.2
Migut.M00782 Erythranthe guttata HOM05D007892 ORTHO05D009211 5.9e-19 100.1 469 32.4
THA.LOC104799933 Tarenaya hassleriana HOM05D012500 ORTHO05D009211 3.2e-17 94.4 341 32.6
ECA236G4021 Erigeron canadensis HOM05D000553 ORTHO05D009211 5.5e-17 93.6 660 31.7
Lsat_1_v5_gn_7_104640 Lactuca sativa HOM05D007892 ORTHO05D009211 5.5e-17 93.6 390 29.7
MELO3C025606.2 Cucumis melo HOM05D007892 ORTHO05D009211 4.7e-16 90.5 489 29.4
C02p17810 Brassica napus HOM05D012500 ORTHO05D009211 6.1e-16 90.1 426 27.9
Nitab4.5_0005017g0030 Nicotiana tabacum HOM05D021138 ORTHO05D009211 6.1e-16 90.1 475 29.9
BolC2t07910H Brassica oleracea HOM05D012500 ORTHO05D009211 3.9e-15 87.4 426 27.7
Psat0s3104g0160 Pisum sativum HOM05D007892 ORTHO05D009211 8.8e-15 86.3 489 29.7
BcaC03g14367 Brassica carinata HOM05D012500 ORTHO05D009211 2.0e-14 85.1 426 27.9
A02p10690 Brassica napus HOM05D012500 ORTHO05D009211 7.4e-14 83.2 386 27.7
BraA02t06132Z Brassica rapa HOM05D012500 ORTHO05D009211 2.8e-13 81.3 386 27.7
SGA_v2.0_scaffold73G24235 Striga asiatica HOM05D007892 ORTHO05D009211 5.3e-12 77.0 448 28.3
Oeu051084.1 Olea europaea HOM05D007892 ORTHO05D009211 1.6e-11 75.5 189 34.9
PSO541G2379 Papaver somniferum HOM05D056025 ORTHO05D009211 2.0e-11 75.1 574 26.1
TPR.G7948 Trifolium pratense HOM05D007892 ORTHO05D009211 3.5e-11 74.3 62 64.5
arahy.Tifrunner.gnm1.ann1.N2Q107 Arachis hypogaea HOM05D007892 ORTHO05D009211 3.8e-10 70.9 220 35.5
Carub.0008s1424 Capsella rubella HOM05D012500 ORTHO05D009211 3.2e-09 67.8 447 26.8
CDE05G2993 Ceratophyllum demersum HOM05D007892 ORTHO05D009211 6.1e-08 63.5 129 39.5
AT5G53930 Arabidopsis thaliana HOM05D012500 ORTHO05D009211 8.0e-08 63.2 470 27.0
unitig_37.g12567 Utricularia gibba HOM05D007892 ORTHO05D009211 1.4e-07 62.4 464 26.7
Aa31LG3G10020 Aethionema arabicum HOM05D012500 ORTHO05D009211 4.0e-07 60.8 449 26.5
AL8G29040 Arabidopsis lyrata HOM05D012500 ORTHO05D009211 4.0e-07 60.8 465 27.1
MSTRG.10462 Avicennia marina HOM05D007892 ORTHO05D009211 1.2e-06 59.3 123 40.7
Sp6g16010 Schrenkiella parvula HOM05D012500 ORTHO05D009211 1.2e-06 59.3 488 26.2
BcaB05g22092 Brassica carinata HOM05D012500 ORTHO05D009211 2.6e-06 58.2 398 25.6
CDE11G0863 Ceratophyllum demersum HOM05D007892 ORTHO05D009211 2.6e-06 58.2 267 30.7
Os07g0107900 Oryza sativa ssp. japonica HOM05D061528 ORTHO05D009211 9.7e-06 56.2 405 27.7


User provided reference genes

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