Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005745 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006639 1.1e-29 132.5 62 100.0
CSS0015538 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006639 1.2e-28 129.0 62 96.8
CSS0022322 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006639 1.8e-27 125.2 62 95.2
CSS0018434 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006639 4.9e-25 117.1 59 91.5
CSS0008706 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006639 4.1e-24 114.0 59 89.8
Dinv11213 Davidia involucrata HOM05D000050 ORTHO05D006639 1.9e-21 105.1 59 79.7
Dinv23194 Davidia involucrata HOM05D000050 ORTHO05D006639 9.5e-21 102.8 59 79.7
Rhsim12G0178500 Rhododendron simsii HOM05D000050 ORTHO05D006639 1.4e-19 99.0 61 78.7
Actinidia08894 Actinidia chinensis HOM05D000050 ORTHO05D006639 4.0e-19 97.4 59 74.6
Lj5A91T48 Lonicera japonica HOM05D000050 ORTHO05D006639 4.0e-19 97.4 59 72.9
Hund02480 Selenicereus undatus HOM05D000050 ORTHO05D006639 8.9e-19 96.3 59 72.9
AUR62029535 Chenopodium quinoa HOM05D000050 ORTHO05D006639 1.5e-18 95.5 59 69.5
AUR62034792 Chenopodium quinoa HOM05D000050 ORTHO05D006639 1.5e-18 95.5 59 69.5
ECA232G2135 Erigeron canadensis HOM05D000050 ORTHO05D006639 2.0e-18 95.1 60 71.7
Ah.11g046520 Amaranthus hybridus HOM05D000050 ORTHO05D006639 2.6e-18 94.7 59 69.5
EL10Ac5g11339 Beta vulgaris HOM05D000050 ORTHO05D006639 2.6e-18 94.7 59 71.2
CSS0046810 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006639 2.6e-18 94.7 62 77.4
DCAR_016360 Daucus carota HOM05D000050 ORTHO05D006639 3.4e-18 94.4 60 75.0
vmacro16743 Vaccinium macrocarpon HOM05D000050 ORTHO05D006639 4.4e-18 94.0 62 74.2
Lsat_1_v5_gn_4_83541 Lactuca sativa HOM05D000050 ORTHO05D006639 5.8e-18 93.6 59 71.2
Lj9A483T63 Lonicera japonica HOM05D000050 ORTHO05D006639 5.8e-18 93.6 59 71.2
Sc10g0010690 Simmondsia chinensis HOM05D000050 ORTHO05D006639 5.8e-18 93.6 59 71.2
Sc10g0010780 Simmondsia chinensis HOM05D000050 ORTHO05D006639 5.8e-18 93.6 59 71.2
ClCG06G018200 Citrullus lanatus HOM05D000050 ORTHO05D006639 1.3e-17 92.4 59 67.8
Cc04_g09520 Coffea canephora HOM05D000050 ORTHO05D006639 1.3e-17 92.4 59 71.2
Gohir.D12G194800 Gossypium hirsutum HOM05D000050 ORTHO05D006639 1.3e-17 92.4 59 67.8
THA.LOC104825033 Tarenaya hassleriana HOM05D000050 ORTHO05D006639 1.3e-17 92.4 59 67.8
MELO3C026177.2 Cucumis melo HOM05D000050 ORTHO05D006639 1.7e-17 92.0 59 67.8
Thhalv10014747m.g Eutrema salsugineum HOM05D000050 ORTHO05D006639 2.2e-17 91.7 59 66.1
PGR044G0139 Punica granatum HOM05D000050 ORTHO05D006639 2.2e-17 91.7 59 69.5
Duzib068G1461 Durio zibethinus HOM05D000050 ORTHO05D006639 2.9e-17 91.3 59 66.1
Thecc.03G136900 Theobroma cacao HOM05D000050 ORTHO05D006639 3.7e-17 90.9 59 66.1
Carub.0008s1086 Capsella rubella HOM05D000050 ORTHO05D006639 4.9e-17 90.5 59 62.7
COL.COLO4_16678 Corchorus olitorius HOM05D000050 ORTHO05D006639 4.9e-17 90.5 59 67.8
Gohir.A12G192700 Gossypium hirsutum HOM05D000050 ORTHO05D006639 4.9e-17 90.5 59 66.1
Gorai.008G209500 Gossypium raimondii HOM05D000050 ORTHO05D006639 4.9e-17 90.5 59 66.1
CiPaw.12G001900 Carya illinoinensis HOM05D000050 ORTHO05D006639 6.4e-17 90.1 59 67.8
Duzib084G0345 Durio zibethinus HOM05D000050 ORTHO05D006639 6.4e-17 90.1 59 66.1
Eucgr.K02668 Eucalyptus grandis HOM05D000050 ORTHO05D006639 6.4e-17 90.1 59 66.1
CsaV3_1G000230 Cucumis sativus L. HOM05D000050 ORTHO05D006639 8.3e-17 89.7 59 66.1
HanXRQChr16g0498781 Helianthus annuus HOM05D000050 ORTHO05D006639 8.3e-17 89.7 59 69.5
TWI14G0127 Tripterygium wilfordii HOM05D000050 ORTHO05D006639 8.3e-17 89.7 59 67.8
Ciclev10032815m.g Citrus clementina HOM05D000050 ORTHO05D006639 1.1e-16 89.4 59 64.4
Potri.012G104100 Populus trichocarpa HOM05D000050 ORTHO05D006639 1.1e-16 89.4 59 64.4
Duzib205G0344 Durio zibethinus HOM05D000050 ORTHO05D006639 1.4e-16 89.0 59 64.4
Potri.015G103400 Populus trichocarpa HOM05D000050 ORTHO05D006639 1.4e-16 89.0 59 66.1
CiPaw.11G002500 Carya illinoinensis HOM05D000050 ORTHO05D006639 1.9e-16 88.6 59 66.1
Oeu058110.1 Olea europaea HOM05D000050 ORTHO05D006639 1.9e-16 88.6 60 70.0
BcaC01g06058 Brassica carinata HOM05D000050 ORTHO05D006639 2.4e-16 88.2 59 64.4
A03p16530 Brassica napus HOM05D000050 ORTHO05D006639 2.4e-16 88.2 59 64.4
C03p19460 Brassica napus HOM05D000050 ORTHO05D006639 2.4e-16 88.2 59 64.4
BolC3t14327H Brassica oleracea HOM05D000050 ORTHO05D006639 2.4e-16 88.2 59 64.4
BraA03t10940Z Brassica rapa HOM05D000050 ORTHO05D006639 2.4e-16 88.2 59 64.4
Sabra15G0122700 Salix brachista HOM05D000050 ORTHO05D006639 2.4e-16 88.2 59 66.1
Nitab4.5_0000033g0120 Nicotiana tabacum HOM05D000050 ORTHO05D006639 3.2e-16 87.8 58 70.7
AL8G25050 Arabidopsis lyrata HOM05D000050 ORTHO05D006639 4.1e-16 87.4 59 62.7
MSTRG.4623 Avicennia marina HOM05D000050 ORTHO05D006639 4.1e-16 87.4 60 66.7
CAN.G65.109 Capsicum annuum HOM05D000050 ORTHO05D006639 4.1e-16 87.4 58 69.0
Cpa.g.sc4.125 Carica papaya HOM05D000050 ORTHO05D006639 4.1e-16 87.4 59 64.4
Ca_16073_v3 Cicer arietinum L. HOM05D000050 ORTHO05D006639 4.1e-16 87.4 59 66.1
SalBow1G8711 Salvia bowleyana HOM05D000050 ORTHO05D006639 4.1e-16 87.4 60 70.0
Aa31LG3G7350 Aethionema arabicum HOM05D000050 ORTHO05D006639 5.4e-16 87.0 58 63.8
AT5G50870 Arabidopsis thaliana HOM05D000050 ORTHO05D006639 5.4e-16 87.0 59 61.0
FAN04G2695 Fragaria x ananassa HOM05D000050 ORTHO05D006639 5.4e-16 87.0 60 68.3
HanXRQChr09g0273641 Helianthus annuus HOM05D000050 ORTHO05D006639 5.4e-16 87.0 59 67.8
Peaxi162Scf01064g00237 Petunia axillaris HOM05D000050 ORTHO05D006639 5.4e-16 87.0 58 70.7
Haze_07125 Corylus avellana HOM05D000050 ORTHO05D006639 7.0e-16 86.7 59 66.1
Migut.O00353 Erythranthe guttata HOM05D000050 ORTHO05D006639 7.0e-16 86.7 60 68.3
Oeu043134.1 Olea europaea HOM05D000050 ORTHO05D006639 7.0e-16 86.7 60 68.3
Sp6g13010 Schrenkiella parvula HOM05D000050 ORTHO05D006639 7.0e-16 86.7 59 62.7
Sed0004769 Sechium edule HOM05D000050 ORTHO05D006639 7.0e-16 86.7 59 66.1
Manes.06G124300 Manihot esculenta HOM05D000050 ORTHO05D006639 9.2e-16 86.3 59 62.7
CDE02G3954 Ceratophyllum demersum HOM05D000050 ORTHO05D006639 1.6e-15 85.5 60 60.0
FAN08G2874 Fragaria x ananassa HOM05D000050 ORTHO05D006639 1.6e-15 85.5 60 66.7
FAN13G1099 Fragaria x ananassa HOM05D000050 ORTHO05D006639 1.6e-15 85.5 60 66.7
Manes.14G047100 Manihot esculenta HOM05D000050 ORTHO05D006639 1.6e-15 85.5 59 62.7
Solyc06g072570.4 Solanum lycopersicum HOM05D000050 ORTHO05D006639 1.6e-15 85.5 58 67.2
PGSC0003DMG400027041 Solanum tuberosum HOM05D000050 ORTHO05D006639 1.6e-15 85.5 58 67.2
CARHR257380 Cardamine hirsuta HOM05D000050 ORTHO05D006639 2.0e-15 85.1 59 61.0
CDE09G0996 Ceratophyllum demersum HOM05D000050 ORTHO05D006639 2.0e-15 85.1 60 60.0
Atru.chr6.1890 Acer truncatum HOM05D000050 ORTHO05D006639 3.5e-15 84.3 59 61.0
FvH4_5g09050 Fragaria vesca HOM05D000050 ORTHO05D006639 3.5e-15 84.3 60 66.7
FAN18G0611 Fragaria x ananassa HOM05D000050 ORTHO05D006639 3.5e-15 84.3 60 66.7
Aqoxy3G01724 Aquilegia oxysepala HOM05D000050 ORTHO05D006639 4.6e-15 84.0 61 62.3
arahy.Tifrunner.gnm1.ann1.Q7T1PG Arachis hypogaea HOM05D000050 ORTHO05D006639 4.6e-15 84.0 59 64.4
arahy.Tifrunner.gnm1.ann1.Z2A8SP Arachis hypogaea HOM05D000050 ORTHO05D006639 4.6e-15 84.0 59 64.4
Phvul.009G163400 Phaseolus vulgaris HOM05D000050 ORTHO05D006639 4.6e-15 84.0 59 62.7
Prupe.5G145200 Prunus persica HOM05D000050 ORTHO05D006639 4.6e-15 84.0 60 66.7
Lalb_Chr11g0069331 Lupinus albus HOM05D000050 ORTHO05D006639 6.0e-15 83.6 59 61.0
Lalb_Chr23g0272971 Lupinus albus HOM05D000050 ORTHO05D006639 6.0e-15 83.6 59 62.7
TPR.G21583 Trifolium pratense HOM05D000050 ORTHO05D006639 6.0e-15 83.6 59 66.1
RcHm_v2.0_Chr7g0189161 Rosa chinensis HOM05D000050 ORTHO05D006639 1.3e-14 82.4 60 66.7
VMungo1309G1070 Vigna mungo HOM05D000050 ORTHO05D006639 1.3e-14 82.4 59 61.0
TAR622G0592 Trochodendron aralioides HOM05D000050 ORTHO05D006639 1.7e-14 82.0 59 62.7
Glyma.06G166300 Glycine max HOM05D000050 ORTHO05D006639 2.3e-14 81.6 59 62.7
Nitab4.5_0006857g0010 Nicotiana tabacum HOM05D000050 ORTHO05D006639 3.0e-14 81.3 61 65.6
Nn3g16340 Nelumbo nucifera HOM05D000050 ORTHO05D006639 3.9e-14 80.9 59 61.0
Psat5g053600 Pisum sativum HOM05D000050 ORTHO05D006639 3.9e-14 80.9 59 61.0
CANSAT80G2273 Cannabis sativa HOM05D000050 ORTHO05D006639 5.0e-14 80.5 60 63.3
Glyma.04G199200 Glycine max HOM05D000050 ORTHO05D006639 5.0e-14 80.5 59 62.7
MD06G1134200 Malus domestica HOM05D000050 ORTHO05D006639 6.6e-14 80.1 60 63.3
PSO017G1401 Papaver somniferum HOM05D000050 ORTHO05D006639 6.6e-14 80.1 60 60.0
PSO478G4241 Papaver somniferum HOM05D000050 ORTHO05D006639 6.6e-14 80.1 60 60.0
MD14G1150500 Malus domestica HOM05D000050 ORTHO05D006639 1.1e-13 79.3 60 63.3
Lj1g0020356 Lotus japonicus HOM05D000050 ORTHO05D006639 1.5e-13 79.0 60 63.3
Medtr3g098780 Medicago truncatula HOM05D000050 ORTHO05D006639 1.9e-13 78.6 59 61.0
unitig_22.g5343 Utricularia gibba HOM05D000050 ORTHO05D006639 2.5e-13 78.2 59 62.7
Gohir.D11G040950 Gossypium hirsutum HOM05D000050 ORTHO05D006639 9.5e-13 76.3 60 58.3
Gohir.A11G037700 Gossypium hirsutum HOM05D000050 ORTHO05D006639 1.2e-12 75.9 60 58.3
Zm00001eb363890 Zea mays HOM05D000050 ORTHO05D006639 2.1e-12 75.1 61 59.0
Os01g0925800 Oryza sativa ssp. japonica HOM05D000050 ORTHO05D006639 3.6e-12 74.3 61 59.0
ATR0582G280 Amborella trichopoda HOM05D000050 ORTHO05D006639 4.7e-12 73.9 59 55.9
Gorai.007G044100 Gossypium raimondii HOM05D000050 ORTHO05D006639 6.2e-12 73.6 55 60.0
AagrBONN_evm.TU.Sc2ySwM_344.919 Anthoceros agrestis HOM05D000050 ORTHO05D006639 3.4e-10 67.8 59 49.2
HPP92_003184 Vanilla planifolia HOM05D000050 ORTHO05D006639 5.8e-10 67.0 60 56.7
HanXRQChr06g0175201 Helianthus annuus HOM05D000050 ORTHO05D006639 9.8e-10 66.2 59 45.8
SEGI_04180 Sequoiadendron giganteum HOM05D000050 ORTHO05D006639 9.8e-10 66.2 61 55.7
HPP92_025291 Vanilla planifolia HOM05D000050 ORTHO05D006639 2.9e-09 64.7 63 55.6
SMO111G0206 Selaginella moellendorffii HOM05D000050 ORTHO05D006639 3.7e-09 64.3 59 49.2
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 4.9e-09 63.9 58 51.7
Mapoly0127s0049 Marchantia polymorpha HOM05D000050 ORTHO05D006639 6.4e-09 63.5 59 49.2
Hma1.2p1_1524F.1_g288830 Hydrangea macrophylla HOM05D000050 ORTHO05D006639 2.4e-08 61.6 61 52.5
Pp3c24_12210 Physcomitrium patens HOM05D000050 ORTHO05D006639 4.1e-08 60.8 59 49.2
Cre01.g046850 Chlamydomonas reinhardtii HOM05D000050 ORTHO05D006639 9.2e-08 59.7 57 47.4
Lsat_1_v5_gn_3_31580 Lactuca sativa HOM05D000050 ORTHO05D006639 9.2e-08 59.7 59 40.7
SEGI_30300 Sequoiadendron giganteum HOM05D000050 ORTHO05D006639 2.1e-07 58.5 60 46.7


User provided reference genes

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