Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005739 Camellia sinensis var. sinensis HOM05D003121 ORTHO05D003535 9.0e-61 236.9 133 100.0
CSS0021302 Camellia sinensis var. sinensis HOM05D003121 ORTHO05D003535 1.1e-55 219.9 132 87.9
Hma1.2p1_0032F.1_g019220 Hydrangea macrophylla HOM05D003121 ORTHO05D003535 3.9e-40 168.3 127 70.1
Dinv41919 Davidia involucrata HOM05D003121 ORTHO05D003535 1.1e-39 166.8 130 70.0
Rhsim01G0025300 Rhododendron simsii HOM05D003121 ORTHO05D003535 3.3e-39 165.2 130 66.9
Actinidia39167 Actinidia chinensis HOM05D003121 ORTHO05D003535 1.7e-38 162.9 134 68.7
Dinv40527 Davidia involucrata HOM05D003121 ORTHO05D003535 8.2e-38 160.6 130 64.6
vmacro13056 Vaccinium macrocarpon HOM05D003121 ORTHO05D003535 5.3e-37 157.9 131 65.6
Nitab4.5_0000563g0090 Nicotiana tabacum HOM05D003121 ORTHO05D003535 4.5e-36 154.8 127 64.6
Nitab4.5_0002341g0030 Nicotiana tabacum HOM05D003121 ORTHO05D003535 7.7e-36 154.1 127 64.6
Cc09_g10310 Coffea canephora HOM05D003121 ORTHO05D003535 4.2e-34 148.3 132 60.6
Prupe.8G168900 Prunus persica HOM05D003121 ORTHO05D003535 7.2e-34 147.5 130 59.2
QL11p052350 Quercus lobata HOM05D003121 ORTHO05D003535 9.4e-34 147.1 131 60.3
Actinidia32029 Actinidia chinensis HOM05D003121 ORTHO05D003535 2.1e-33 146.0 133 63.2
Hma1.2p1_0163F.1_g072700 Hydrangea macrophylla HOM05D003121 ORTHO05D003535 6.1e-33 144.4 127 63.8
MSTRG.27630 Avicennia marina HOM05D003121 ORTHO05D003535 8.0e-33 144.1 130 57.7
CsaV3_7G001220 Cucumis sativus L. HOM05D003121 ORTHO05D003535 8.0e-33 144.1 130 57.7
ClCG02G003910 Citrullus lanatus HOM05D003121 ORTHO05D003535 1.0e-32 143.7 131 59.5
CiPaw.02G071300 Carya illinoinensis HOM05D003121 ORTHO05D003535 1.4e-32 143.3 130 57.7
Migut.N01332 Erythranthe guttata HOM05D003121 ORTHO05D003535 1.8e-32 142.9 130 60.0
PGSC0003DMG401001724 Solanum tuberosum HOM05D003121 ORTHO05D003535 3.0e-32 142.1 128 60.9
Solyc01g088730.3 Solanum lycopersicum HOM05D003121 ORTHO05D003535 6.8e-32 141.0 128 59.4
Sopen01g035570 Solanum pennellii HOM05D003121 ORTHO05D003535 6.8e-32 141.0 128 59.4
Peaxi162Scf00793g00345 Petunia axillaris HOM05D003121 ORTHO05D003535 1.2e-31 140.2 127 59.8
CAN.G756.31 Capsicum annuum HOM05D003121 ORTHO05D003535 2.6e-31 139.0 127 57.5
FvH4_2g15640 Fragaria vesca HOM05D003121 ORTHO05D003535 2.6e-31 139.0 130 56.2
FAN20G1288 Fragaria x ananassa HOM05D003121 ORTHO05D003535 2.6e-31 139.0 130 56.2
FAN24G0024 Fragaria x ananassa HOM05D003121 ORTHO05D003535 2.6e-31 139.0 130 56.2
RcHm_v2.0_Chr6g0278841 Rosa chinensis HOM05D003121 ORTHO05D003535 2.6e-31 139.0 130 58.5
TAR376G0768 Trochodendron aralioides HOM05D003121 ORTHO05D003535 2.6e-31 139.0 130 60.0
Ciclev10030221m.g Citrus clementina HOM05D003121 ORTHO05D003535 4.4e-31 138.3 127 59.1
Duzib052G0361 Durio zibethinus HOM05D003121 ORTHO05D003535 5.7e-31 137.9 130 56.2
arahy.Tifrunner.gnm1.ann1.TJ1SRC Arachis hypogaea HOM05D003121 ORTHO05D003535 7.5e-31 137.5 130 59.2
PGR042G3155 Punica granatum HOM05D003121 ORTHO05D003535 7.5e-31 137.5 130 56.2
Haze_00809 Corylus avellana HOM05D003121 ORTHO05D003535 9.7e-31 137.1 130 56.2
GSVIVG01037045001 Vitis vinifera HOM05D003121 ORTHO05D003535 1.3e-30 136.7 130 59.2
Sed0021457 Sechium edule HOM05D003121 ORTHO05D003535 2.2e-30 136.0 131 57.3
TAR625G0403 Trochodendron aralioides HOM05D003121 ORTHO05D003535 2.8e-30 135.6 130 60.0
Lj5P177T42 Lonicera japonica HOM05D003121 ORTHO05D003535 3.7e-30 135.2 135 60.7
Psat6g232680 Pisum sativum HOM05D003121 ORTHO05D003535 1.1e-29 133.7 133 54.1
Thecc.02G055800 Theobroma cacao HOM05D003121 ORTHO05D003535 1.1e-29 133.7 132 56.8
arahy.Tifrunner.gnm1.ann1.LP37DI Arachis hypogaea HOM05D003121 ORTHO05D003535 1.8e-29 132.9 130 57.7
Gohir.D01G161400 Gossypium hirsutum HOM05D003121 ORTHO05D003535 2.4e-29 132.5 127 57.5
Gorai.002G200100 Gossypium raimondii HOM05D003121 ORTHO05D003535 2.4e-29 132.5 127 57.5
Glyma.20G106400 Glycine max HOM05D003121 ORTHO05D003535 4.1e-29 131.7 126 57.9
MELO3C013333.2 Cucumis melo HOM05D003121 ORTHO05D003535 5.3e-29 131.3 130 53.8
Ca_03297_v3 Cicer arietinum L. HOM05D003121 ORTHO05D003535 1.6e-28 129.8 130 54.6
SGA_v2.0_scaffold195G40810 Striga asiatica HOM05D003121 ORTHO05D003535 3.5e-28 128.6 132 53.8
Gohir.A01G170400 Gossypium hirsutum HOM05D003121 ORTHO05D003535 4.5e-28 128.3 130 55.4
MD05G1124900 Malus domestica HOM05D003121 ORTHO05D003535 5.9e-28 127.9 130 51.5
Medtr1g112910 Medicago truncatula HOM05D003121 ORTHO05D003535 5.9e-28 127.9 132 55.3
Actinidia21476 Actinidia chinensis HOM05D003121 ORTHO05D003535 7.7e-28 127.5 131 59.5
CiPaw.01G132000 Carya illinoinensis HOM05D003121 ORTHO05D003535 1.0e-27 127.1 129 56.6
HanXRQChr10g0298091 Helianthus annuus HOM05D003121 ORTHO05D003535 2.9e-27 125.6 133 55.6
Manes.15G059200 Manihot esculenta HOM05D003121 ORTHO05D003535 2.9e-27 125.6 132 53.8
Hund00013 Selenicereus undatus HOM05D003121 ORTHO05D003535 5.0e-27 124.8 136 54.4
COL.COLO4_17374 Corchorus olitorius HOM05D003121 ORTHO05D003535 6.5e-27 124.4 133 53.4
THA.LOC104819658 Tarenaya hassleriana HOM05D003121 ORTHO05D003535 8.5e-27 124.0 132 51.5
VMungo0720G1452 Vigna mungo HOM05D003121 ORTHO05D003535 1.5e-26 123.2 130 53.8
DCAR_020880 Daucus carota HOM05D003121 ORTHO05D003535 9.4e-26 120.6 132 54.5
Eucgr.G01791 Eucalyptus grandis HOM05D003121 ORTHO05D003535 9.4e-26 120.6 130 54.6
TPR.G2486 Trifolium pratense HOM05D003121 ORTHO05D003535 9.4e-26 120.6 132 51.5
Sp2g23600 Schrenkiella parvula HOM05D003121 ORTHO05D003535 1.2e-25 120.2 134 53.7
Sc14g0002330 Simmondsia chinensis HOM05D003121 ORTHO05D003535 1.2e-25 120.2 131 55.7
AT5G23590 Arabidopsis thaliana HOM05D003121 ORTHO05D003535 1.6e-25 119.8 132 52.3
DCAR_022799 Daucus carota HOM05D003121 ORTHO05D003535 1.6e-25 119.8 132 53.8
EL10Ac6g13967 Beta vulgaris HOM05D003121 ORTHO05D003535 2.1e-25 119.4 130 52.3
EL10Ac9g21341 Beta vulgaris HOM05D003121 ORTHO05D003535 2.7e-25 119.0 132 51.5
Lalb_Chr06g0163731 Lupinus albus HOM05D003121 ORTHO05D003535 3.6e-25 118.6 124 52.4
AL6G34890 Arabidopsis lyrata HOM05D003121 ORTHO05D003535 8.0e-25 117.5 132 51.5
MBI15_g18375_MAGBIO Magnolia biondii HOM05D000140 ORTHO05D000087 1.4e-24 116.7 129 55.8
Nn5g27768 Nelumbo nucifera HOM05D003121 ORTHO05D003535 1.4e-24 116.7 129 54.3
Lsat_1_v5_gn_4_72000 Lactuca sativa HOM05D003121 ORTHO05D003535 1.8e-24 116.3 133 51.1
MBI07_g07805_MAGBIO Magnolia biondii HOM05D003121 ORTHO05D003535 1.8e-24 116.3 132 52.3
Thhalv10004704m.g Eutrema salsugineum HOM05D003121 ORTHO05D003535 2.3e-24 115.9 134 50.7
Lj5g0004060 Lotus japonicus HOM05D003121 ORTHO05D003535 2.3e-24 115.9 126 50.8
Sed0012540 Sechium edule HOM05D003121 ORTHO05D003535 2.3e-24 115.9 115 53.9
Ah.01g023230 Amaranthus hybridus HOM05D003121 ORTHO05D003535 6.8e-24 114.4 130 53.8
Oeu028963.1 Olea europaea HOM05D003121 ORTHO05D003535 2.0e-23 112.8 81 67.9
Phvul.007G017900 Phaseolus vulgaris HOM05D003121 ORTHO05D003535 2.6e-23 112.5 121 53.7
Carub.0006s2137 Capsella rubella HOM05D003121 ORTHO05D003535 4.4e-23 111.7 132 50.0
CARHR189980 Cardamine hirsuta HOM05D003121 ORTHO05D003535 5.7e-23 111.3 131 51.1
PSO541G2003 Papaver somniferum HOM05D003121 ORTHO05D003535 5.7e-23 111.3 136 49.3
ECA234G0462 Erigeron canadensis HOM05D003121 ORTHO05D003535 9.8e-23 110.5 134 50.0
CSS0045143 Camellia sinensis var. sinensis HOM05D003121 ORTHO05D003535 1.3e-22 110.2 131 52.7
TWI60G0855 Tripterygium wilfordii HOM05D003121 ORTHO05D003535 3.7e-22 108.6 130 50.8
A06p34540 Brassica napus HOM05D000059 ORTHO05D003535 1.1e-21 107.1 135 51.9
Aa31LG10G14410 Aethionema arabicum HOM05D003121 ORTHO05D003535 1.4e-21 106.7 134 49.3
Lsat_1_v5_gn_4_71980 Lactuca sativa HOM05D003121 ORTHO05D003535 1.4e-21 106.7 131 48.9
AUR62010012 Chenopodium quinoa HOM05D003121 ORTHO05D003535 1.8e-21 106.3 134 53.0
PSO675G0341 Papaver somniferum HOM05D003121 ORTHO05D003535 2.4e-21 105.9 138 47.8
AUR62013002 Chenopodium quinoa HOM05D003121 ORTHO05D003535 3.1e-21 105.5 133 51.1
Eucgr.L03152 Eucalyptus grandis HOM05D003121 ORTHO05D003535 3.1e-21 105.5 132 50.8
Glyma.10G283300 Glycine max HOM05D003121 ORTHO05D003535 4.1e-21 105.1 121 50.4
BraA06t26383Z Brassica rapa HOM05D003121 ORTHO05D003535 3.5e-20 102.1 135 49.6
C07p43950 Brassica napus HOM05D003121 ORTHO05D003535 5.9e-20 101.3 139 49.6
AUR62015153 Chenopodium quinoa HOM05D003121 ORTHO05D003535 5.9e-20 101.3 133 51.9
CDE02G2638 Ceratophyllum demersum HOM05D003121 ORTHO05D003535 1.3e-19 100.1 133 45.9
CDE09G1210 Ceratophyllum demersum HOM05D003121 ORTHO05D003535 2.9e-19 99.0 134 47.8
BolC7t44923H Brassica oleracea HOM05D003121 ORTHO05D003535 3.3e-18 95.5 136 47.8
CSS0049142 Camellia sinensis var. sinensis HOM05D003121 ORTHO05D003535 3.3e-18 95.5 65 73.8
unitig_746.g26872 Utricularia gibba HOM05D003121 ORTHO05D003535 1.6e-17 93.2 131 44.3
COL.COLO4_32987 Corchorus olitorius HOM05D003121 ORTHO05D003535 2.1e-17 92.8 118 49.2
ATR0661G016 Amborella trichopoda HOM05D003121 ORTHO05D003535 1.0e-16 90.5 137 40.9
Aqoxy6G01979 Aquilegia oxysepala HOM05D003121 ORTHO05D003535 1.2e-15 87.0 143 41.3
SEGI_06864 Sequoiadendron giganteum HOM05D003121 ORTHO05D003535 4.4e-15 85.1 131 44.3
Sabra09G0107000 Salix brachista HOM05D003121 ORTHO05D003535 2.2e-14 82.8 136 41.9
Potri.009G138100 Populus trichocarpa HOM05D003121 ORTHO05D003535 8.3e-14 80.9 137 42.3
BcaNung05203 Brassica carinata HOM05D003121 ORTHO05D003535 1.1e-13 80.5 139 43.9
Zm00001eb002940 Zea mays HOM05D003121 ORTHO05D003535 2.4e-13 79.3 132 41.7
PGSC0003DMG400045980 Solanum tuberosum HOM05D003121 ORTHO05D003535 5.4e-13 78.2 115 46.1
Actinidia08416 Actinidia chinensis HOM05D003121 ORTHO05D003535 1.2e-12 77.0 86 57.0
PGSC0003DMG400015012 Solanum tuberosum HOM05D003121 ORTHO05D003535 2.7e-12 75.9 119 42.0
SHI04584 Sapria himalayana HOM05D003121 ORTHO05D003535 3.5e-12 75.5 114 42.1
Solyc12g056890.1 Solanum lycopersicum HOM05D003121 ORTHO05D003535 1.3e-11 73.6 117 41.9
HPP92_007329 Vanilla planifolia HOM05D003121 ORTHO05D003535 1.3e-11 73.6 133 39.8
PGSC0003DMG401018151 Solanum tuberosum HOM05D003121 ORTHO05D003535 1.1e-10 70.5 120 41.7
DCAR_029977 Daucus carota HOM05D003121 ORTHO05D003535 5.6e-10 68.2 61 57.4
Mapoly0015s0100 Marchantia polymorpha HOM05D003121 ORTHO05D003535 9.5e-10 67.4 150 34.7
Os03g0136800 Oryza sativa ssp. japonica HOM05D003121 ORTHO05D003535 1.6e-09 66.6 62 53.2
Sopen04g007110 Solanum pennellii HOM05D003121 ORTHO05D003535 4.7e-09 65.1 116 37.9
Solyc04g015090.3 Solanum lycopersicum HOM05D003121 ORTHO05D003535 4.0e-08 62.0 116 36.2
ECA236G3931 Erigeron canadensis HOM05D003121 ORTHO05D003535 6.8e-08 61.2 82 43.9
AagrBONN_evm.TU.Sc2ySwM_362.2486 Anthoceros agrestis HOM05D003121 ORTHO05D003535 2.6e-07 59.3 62 46.8
ECA240G2719 Erigeron canadensis HOM05D003121 ORTHO05D003535 4.4e-07 58.5 39 66.7
BcaB07g29983 Brassica carinata HOM05D000059 ORTHO05D000128 9.8e-07 57.4 36 69.4
PSO339G5273 Papaver somniferum HOM05D003121 ORTHO05D003535 1.3e-06 57.0 125 38.4
Peaxi162Scf00444g00017 Petunia axillaris HOM05D003121 ORTHO05D003535 2.9e-06 55.8 126 33.3


User provided reference genes

Program Settings