Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005733 Camellia sinensis var. sinensis HOM05D007867 ORTHO05D009953 2.2e-93 345.5 165 100.0
CiPaw.08G145800 Carya illinoinensis HOM05D007867 ORTHO05D009953 1.0e-13 80.9 42 85.7
Nn1g05680 Nelumbo nucifera HOM05D007867 ORTHO05D009953 1.8e-13 80.1 42 88.1
Thecc.01G083600 Theobroma cacao HOM05D007867 ORTHO05D009953 1.8e-13 80.1 42 88.1
Actinidia36378 Actinidia chinensis HOM05D007867 ORTHO05D009953 3.9e-13 79.0 42 88.1
Oeu033792.2 Olea europaea HOM05D007867 ORTHO05D009953 1.9e-12 76.6 59 62.7
ATR0800G156 Amborella trichopoda HOM05D007867 ORTHO05D009953 7.4e-12 74.7 42 83.3
Dinv36978 Davidia involucrata HOM05D007867 ORTHO05D009953 1.6e-11 73.6 44 79.5
FAN28G0366 Fragaria x ananassa HOM05D007867 ORTHO05D009953 2.1e-11 73.2 48 77.1
Zm00001eb061250 Zea mays HOM05D007867 ORTHO05D009953 2.8e-11 72.8 46 78.3
RcHm_v2.0_Chr2g0109971 Rosa chinensis HOM05D007867 ORTHO05D009953 3.7e-11 72.4 44 77.3
Sed0014306 Sechium edule HOM05D007867 ORTHO05D009953 4.8e-11 72.0 42 85.7
vmacro19595 Vaccinium macrocarpon HOM05D007867 ORTHO05D009953 4.8e-11 72.0 43 79.1
MD10G1057100 Malus domestica HOM05D007867 ORTHO05D009953 1.4e-10 70.5 43 76.7
Gohir.A11G209001 Gossypium hirsutum HOM05D007867 ORTHO05D009953 1.8e-10 70.1 42 76.2
Lalb_Chr09g0325761 Lupinus albus HOM05D007867 ORTHO05D009953 1.8e-10 70.1 44 81.8
Sc03g0000590 Simmondsia chinensis HOM05D007867 ORTHO05D009953 1.8e-10 70.1 47 74.5
FvH4_1g18950 Fragaria vesca HOM05D007867 ORTHO05D009953 4.0e-10 68.9 47 76.6
GSVIVG01006775001 Vitis vinifera HOM05D007867 ORTHO05D009953 9.0e-10 67.8 42 78.6
CiPaw.08G128500 Carya illinoinensis HOM05D007867 ORTHO05D009953 1.2e-09 67.4 44 70.5
CiPaw.08G145600 Carya illinoinensis HOM05D007867 ORTHO05D009953 2.6e-09 66.2 45 73.3
CiPaw.07G042200 Carya illinoinensis HOM05D007867 ORTHO05D009953 3.4e-09 65.9 42 76.2
Gohir.D03G034400 Gossypium hirsutum HOM05D007867 ORTHO05D009953 3.4e-09 65.9 42 76.2
Gorai.003G036100 Gossypium raimondii HOM05D007867 ORTHO05D009953 3.4e-09 65.9 42 76.2
Manes.13G104200 Manihot esculenta HOM05D007867 ORTHO05D009953 3.4e-09 65.9 42 76.2
Nn5g29770 Nelumbo nucifera HOM05D007867 ORTHO05D009953 3.4e-09 65.9 42 76.2
CiPaw.05G026800 Carya illinoinensis HOM05D007867 ORTHO05D009953 5.8e-09 65.1 41 78.0
RhsimUnG0066800 Rhododendron simsii HOM05D007867 ORTHO05D009953 7.6e-09 64.7 55 61.8
Hma1.2p1_1119F.1_g259180 Hydrangea macrophylla HOM05D007867 ORTHO05D009953 1.0e-08 64.3 42 71.4
TPR.G40500 Trifolium pratense HOM05D007867 ORTHO05D009953 1.0e-08 64.3 29 96.6
Medtr5g030870 Medicago truncatula HOM05D007867 ORTHO05D009953 2.2e-08 63.2 42 71.4
DCAR_021457 Daucus carota HOM05D000419 ORTHO05D000692 4.9e-08 62.0 43 72.1
Gohir.D11G214500 Gossypium hirsutum HOM05D007867 ORTHO05D009953 4.9e-08 62.0 42 76.2
TPR.G37059 Trifolium pratense HOM05D007867 ORTHO05D009953 1.4e-07 60.5 42 69.0
Ca_13472_v3 Cicer arietinum L. HOM05D007867 ORTHO05D009953 1.9e-07 60.1 44 75.0
MBI16_g37795_MAGBIO Magnolia biondii HOM05D007867 ORTHO05D009953 1.9e-07 60.1 44 61.4
Os07g0191650 Oryza sativa ssp. japonica HOM05D007867 ORTHO05D009953 1.9e-07 60.1 53 60.4
Cc07_g07830 Coffea canephora HOM05D007867 ORTHO05D009953 3.2e-07 59.3 45 68.9
Glyma.09G202700 Glycine max HOM05D007867 ORTHO05D009953 5.5e-07 58.5 43 69.8
Potri.015G025600 Populus trichocarpa HOM05D007867 ORTHO05D009953 7.1e-07 58.2 42 64.3
EL10Ac9g22129 Beta vulgaris HOM05D007867 ORTHO05D009953 9.3e-07 57.8 48 62.5
Ciclev10027423m.g Citrus clementina HOM05D007867 ORTHO05D009953 9.3e-07 57.8 42 66.7
Cc02_g20570 Coffea canephora HOM05D007867 ORTHO05D009953 9.3e-07 57.8 41 70.7
Lalb_Chr16g0383101 Lupinus albus HOM05D007867 ORTHO05D009953 9.3e-07 57.8 43 67.4
FAN23G2231 Fragaria x ananassa HOM05D007867 ORTHO05D009953 1.2e-06 57.4 80 45.0
SHI12190 Sapria himalayana HOM05D007867 ORTHO05D009953 2.1e-06 56.6 71 45.1
Peaxi162Scf00943g00415 Petunia axillaris HOM05D007867 ORTHO05D009953 2.7e-06 56.2 40 65.0
Potri.015G025700 Populus trichocarpa HOM05D007867 ORTHO05D009953 2.7e-06 56.2 42 64.3
CSS0034185 Camellia sinensis var. sinensis HOM05D007867 ORTHO05D009953 3.5e-06 55.8 24 100.0
Hund00401 Selenicereus undatus HOM05D007867 ORTHO05D009953 3.5e-06 55.8 45 64.4
CSS0046855 Camellia sinensis var. sinensis HOM05D000657 ORTHO05D001476 7.9e-06 54.7 45 60.0
ClCG09G016440 Citrullus lanatus HOM05D007867 ORTHO05D009953 7.9e-06 54.7 46 63.0


User provided reference genes

Program Settings