Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 3.2e-122 441.8 227 100.0
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 7.8e-121 437.2 227 99.1
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 4.6e-113 411.4 227 91.2
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 4.6e-113 411.4 228 92.5
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.0e-112 408.7 227 90.3
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 1.1e-111 406.8 227 91.2
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.8e-110 402.1 227 89.9
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 8.1e-110 400.6 227 89.4
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 1.4e-109 399.8 227 89.4
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 1.8e-109 399.4 227 89.0
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 1.8e-109 399.4 227 89.4
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 5.2e-109 397.9 227 89.0
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 8.9e-109 397.1 227 88.5
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 1.2e-108 396.7 227 86.8
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 2.0e-108 396.0 214 92.5
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 3.4e-108 395.2 227 89.0
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 3.4e-108 395.2 227 87.7
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 4.4e-108 394.8 227 88.1
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 4.4e-108 394.8 227 89.0
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 1.7e-107 392.9 227 88.1
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 1.7e-107 392.9 228 88.6
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 4.9e-107 391.3 218 92.7
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 4.9e-107 391.3 226 86.3
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 6.4e-107 391.0 227 85.5
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 1.1e-106 390.2 227 86.8
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 1.4e-106 389.8 227 85.9
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 1.4e-106 389.8 227 87.7
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 1.9e-106 389.4 228 87.7
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 2.4e-106 389.0 227 86.8
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 4.1e-106 388.3 227 86.3
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 7.1e-106 387.5 227 85.9
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 7.1e-106 387.5 227 86.8
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 9.2e-106 387.1 227 84.6
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 1.6e-105 386.3 227 85.5
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 2.1e-105 386.0 227 84.6
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 3.5e-105 385.2 227 86.3
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 4.6e-105 384.8 229 87.3
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 4.6e-105 384.8 227 85.9
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 4.6e-105 384.8 227 84.1
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 6.0e-105 384.4 226 86.7
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 1.0e-104 383.6 227 84.1
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 1.0e-104 383.6 229 86.5
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 1.0e-104 383.6 226 85.0
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 1.3e-104 383.3 224 87.5
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 2.3e-104 382.5 228 86.0
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 2.3e-104 382.5 228 86.0
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 2.3e-104 382.5 227 85.0
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 3.0e-104 382.1 229 87.3
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 3.0e-104 382.1 228 85.5
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 3.9e-104 381.7 227 84.1
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 3.9e-104 381.7 227 84.1
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 3.9e-104 381.7 219 86.8
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 5.1e-104 381.3 227 85.0
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 8.6e-104 380.6 217 87.6
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 8.6e-104 380.6 227 83.7
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 1.1e-103 380.2 226 84.5
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 1.5e-103 379.8 229 84.3
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 1.9e-103 379.4 226 85.0
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 2.5e-103 379.0 226 84.5
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 2.5e-103 379.0 227 84.1
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 3.3e-103 378.6 227 84.1
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 4.3e-103 378.3 228 84.2
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 5.6e-103 377.9 229 83.8
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 5.6e-103 377.9 227 83.7
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 5.6e-103 377.9 221 86.4
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 7.3e-103 377.5 227 82.8
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 9.6e-103 377.1 228 83.8
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 9.6e-103 377.1 227 82.8
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 9.6e-103 377.1 229 84.3
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 2.1e-102 375.9 226 83.6
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 2.8e-102 375.6 227 82.4
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 3.6e-102 375.2 227 82.4
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 4.7e-102 374.8 227 81.5
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 6.2e-102 374.4 227 81.5
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 6.2e-102 374.4 227 83.7
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 8.1e-102 374.0 227 82.4
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 1.1e-101 373.6 233 84.1
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 1.1e-101 373.6 227 82.8
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 1.4e-101 373.2 227 85.5
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 4.0e-101 371.7 215 87.0
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 1.5e-100 369.8 228 83.3
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 2.0e-100 369.4 217 83.9
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 2.0e-100 369.4 214 87.4
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 4.4e-100 368.2 217 84.3
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 7.6e-100 367.5 227 81.9
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 1.3e-99 366.7 207 88.4
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 2.2e-99 365.9 218 83.9
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 2.2e-99 365.9 227 81.5
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 2.9e-99 365.5 227 81.9
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 6.4e-99 364.4 217 83.9
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 6.4e-99 364.4 214 86.4
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 8.4e-99 364.0 215 84.2
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 1.4e-98 363.2 214 82.7
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 1.9e-98 362.8 225 80.9
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 1.9e-98 362.8 228 80.7
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.2e-98 362.1 214 85.0
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 7.1e-98 360.9 225 83.1
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 4.6e-97 358.2 208 86.5
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 6.0e-97 357.8 216 83.8
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 6.0e-97 357.8 214 82.2
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.7e-96 356.3 206 85.4
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 2.3e-96 355.9 227 78.0
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 3.0e-96 355.5 205 86.3
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 3.9e-96 355.1 214 83.6
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 6.6e-96 354.4 214 84.6
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 6.6e-96 354.4 265 70.6
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 1.9e-95 352.8 213 82.2
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 5.6e-95 351.3 215 80.9
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 2.8e-94 349.0 227 79.7
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 6.2e-94 347.8 214 79.0
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 4.0e-93 345.1 227 78.0
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 3.4e-92 342.0 210 85.2
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 1.7e-88 329.7 195 84.1
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 6.6e-88 327.8 228 73.2
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 1.9e-87 326.2 190 84.7
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 6.9e-85 317.8 227 73.6
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 6.9e-85 317.8 191 82.2
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 9.0e-85 317.4 212 74.5
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.0e-80 302.4 195 77.9
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 1.5e-79 300.1 181 85.6
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 1.4e-77 293.5 214 70.1
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 2.6e-76 289.3 164 89.0
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 4.5e-76 288.5 229 70.7
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 2.7e-73 279.3 227 68.7
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 1.0e-72 277.3 164 82.9
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 1.3e-72 276.9 216 66.2
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 1.8e-72 276.6 222 65.8
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 1.5e-71 273.5 193 74.1
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 1.8e-69 266.5 160 80.6
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 4.1e-69 265.4 197 74.6
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 8.4e-67 257.7 209 64.1
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 5.5e-66 255.0 150 84.0
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 2.1e-65 253.1 153 81.0
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 3.3e-63 245.7 155 81.3
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 1.5e-60 236.9 237 53.2
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 6.7e-56 221.5 215 54.9
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 1.5e-52 210.3 194 61.3
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 2.2e-51 206.5 131 76.3
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.8e-43 179.1 115 79.1
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 1.1e-42 177.6 124 71.0
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 1.2e-41 174.1 108 82.4
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.1e-33 146.7 87 85.1
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.4e-32 144.1 109 71.6
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 8.3e-30 134.8 92 70.7
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 3.5e-28 129.4 135 56.3
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.0e-27 127.9 113 66.4
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 2.7e-20 103.2 63 76.2
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 9.5e-18 94.7 51 90.2
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.8e-16 90.5 97 53.6
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 5.7e-15 85.5 68 61.8
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 3.2e-13 79.7 60 71.7
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 2.0e-12 77.0 208 29.3
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 4.6e-12 75.9 114 43.9
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 8.9e-08 61.6 63 57.1
QL07p013384 Quercus lobata HOM05D000223 ORTHO05D008670 4.9e-06 55.8 147 29.3
SGA_v2.0_scaffold131G34397 Striga asiatica HOM05D000083 ORTHO05D000196 8.3e-06 55.1 75 36.0


User provided reference genes

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