Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005676 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 8.2e-118 427.2 230 100.0
CSS0039588 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 9.0e-117 423.7 228 99.6
Rhsim06G0017400 Rhododendron simsii HOM05D006215 ORTHO05D007719 1.7e-86 323.2 229 73.4
vmacro21863 Vaccinium macrocarpon HOM05D006215 ORTHO05D007719 2.8e-86 322.4 192 82.3
Prupe.4G165400 Prunus persica HOM05D006215 ORTHO05D007719 2.0e-84 316.2 183 81.4
Dinv31883 Davidia involucrata HOM05D006215 ORTHO05D007719 4.5e-84 315.1 239 69.9
Potri.002G018100 Populus trichocarpa HOM05D006215 ORTHO05D007719 3.8e-83 312.0 176 83.5
Solyc04g081850.4 Solanum lycopersicum HOM05D006215 ORTHO05D007719 6.5e-83 311.2 183 78.7
Sopen04g035480 Solanum pennellii HOM05D006215 ORTHO05D007719 3.2e-82 308.9 183 78.7
PGSC0003DMG400009949 Solanum tuberosum HOM05D006215 ORTHO05D007719 5.5e-82 308.1 227 67.8
RcHm_v2.0_Chr5g0031011 Rosa chinensis HOM05D006215 ORTHO05D007719 9.4e-82 307.4 186 79.0
MD03G1242500 Malus domestica HOM05D006215 ORTHO05D007719 1.2e-81 307.0 183 80.3
FAN11G1504 Fragaria x ananassa HOM05D006215 ORTHO05D007719 1.6e-81 306.6 186 78.0
Manes.18G010300 Manihot esculenta HOM05D006215 ORTHO05D007719 2.7e-81 305.8 175 81.7
QL02p012562 Quercus lobata HOM05D006215 ORTHO05D007719 4.7e-81 305.1 176 83.5
DCAR_009503 Daucus carota HOM05D006215 ORTHO05D007719 1.0e-80 303.9 175 83.4
Cfa013993 Carpinus fangiana HOM05D006215 ORTHO05D007719 1.4e-80 303.5 176 82.4
FAN25G2739 Fragaria x ananassa HOM05D006215 ORTHO05D007719 5.2e-80 301.6 186 76.9
GSVIVG01009974001 Vitis vinifera HOM05D006215 ORTHO05D009429 8.8e-80 300.8 172 83.7
MSTRG.1158 Avicennia marina HOM05D006215 ORTHO05D007719 2.0e-79 299.7 231 65.8
Ciclev10002478m.g Citrus clementina HOM05D006215 ORTHO05D007719 2.6e-79 299.3 177 80.8
Thecc.08G049400 Theobroma cacao HOM05D006215 ORTHO05D007719 3.3e-79 298.9 176 80.7
Lj4C18G8 Lonicera japonica HOM05D000114 ORTHO05D009837 4.4e-79 298.5 176 80.7
Sabra02G0014400 Salix brachista HOM05D006215 ORTHO05D007719 5.7e-79 298.1 216 68.1
Cpa.g.sc26.282 Carica papaya HOM05D006215 ORTHO05D007719 1.3e-78 297.0 176 80.1
Gohir.D01G096200 Gossypium hirsutum HOM05D006215 ORTHO05D007719 1.3e-78 297.0 185 76.8
COL.COLO4_26102 Corchorus olitorius HOM05D006215 ORTHO05D007719 2.8e-78 295.8 175 78.3
Gohir.A01G109400 Gossypium hirsutum HOM05D006215 ORTHO05D007719 3.7e-78 295.4 185 76.2
arahy.Tifrunner.gnm1.ann1.89BLSN Arachis hypogaea HOM05D006215 ORTHO05D007719 6.3e-78 294.7 173 80.3
Gorai.002G121700 Gossypium raimondii HOM05D006215 ORTHO05D007719 8.2e-78 294.3 185 76.2
Duzib041G0142 Durio zibethinus HOM05D006215 ORTHO05D007719 1.1e-77 293.9 175 78.9
Atru.chr13.240 Acer truncatum HOM05D006215 ORTHO05D007719 1.4e-77 293.5 183 78.1
Migut.C00887 Erythranthe guttata HOM05D006215 ORTHO05D007719 2.4e-77 292.7 175 80.0
Lj1g0006385 Lotus japonicus HOM05D006215 ORTHO05D007719 4.1e-77 292.0 182 76.4
Sed0008956 Sechium edule HOM05D006215 ORTHO05D007719 9.1e-77 290.8 173 79.2
Nn5g30812 Nelumbo nucifera HOM05D006215 ORTHO05D007719 1.6e-76 290.0 173 79.2
Phvul.009G018900 Phaseolus vulgaris HOM05D006215 ORTHO05D007719 2.7e-76 289.3 183 74.9
VMungo1215G3215 Vigna mungo HOM05D006215 ORTHO05D007719 2.7e-76 289.3 179 76.5
Glyma.06G021900 Glycine max HOM05D006215 ORTHO05D007719 7.7e-76 287.7 173 79.8
Lalb_Chr23g0266051 Lupinus albus HOM05D006215 ORTHO05D007719 1.0e-75 287.3 183 74.9
CsaV3_3G046060 Cucumis sativus L. HOM05D006215 ORTHO05D007719 1.7e-75 286.6 179 77.1
CAN.G311.58 Capsicum annuum HOM05D006215 ORTHO05D007719 2.2e-75 286.2 185 74.1
Glyma.04G021700 Glycine max HOM05D006215 ORTHO05D007719 2.9e-75 285.8 183 74.9
Medtr3g114470 Medicago truncatula HOM05D006215 ORTHO05D007719 3.8e-75 285.4 178 74.7
Lsat_1_v5_gn_8_29640 Lactuca sativa HOM05D006215 ORTHO05D007719 6.5e-75 284.6 175 76.0
SGA_v2.0_scaffold292G47375 Striga asiatica HOM05D006215 ORTHO05D007719 8.5e-75 284.3 178 76.4
CANSAT25G1322 Cannabis sativa HOM05D006215 ORTHO05D007719 1.9e-74 283.1 176 77.8
CANSAT80G2378 Cannabis sativa HOM05D006215 ORTHO05D007719 2.5e-74 282.7 184 73.9
Ca_15473_v3 Cicer arietinum L. HOM05D006215 ORTHO05D007719 2.5e-74 282.7 173 77.5
ECA233G5922 Erigeron canadensis HOM05D000114 ORTHO05D000075 1.2e-73 280.4 175 76.0
HanXRQChr13g0386921 Helianthus annuus HOM05D006215 ORTHO05D007719 1.2e-73 280.4 177 75.1
Psat5g012560 Pisum sativum HOM05D006215 ORTHO05D007719 1.6e-73 280.0 183 71.6
Rhsim06G0015300 Rhododendron simsii HOM05D006215 ORTHO05D007719 1.6e-73 280.0 229 66.4
TWI12G0400 Tripterygium wilfordii HOM05D006215 ORTHO05D007719 3.6e-73 278.9 176 76.1
SalBow7G2905 Salvia bowleyana HOM05D006215 ORTHO05D007719 5.7e-71 271.6 196 67.9
HPP92_025438 Vanilla planifolia HOM05D006215 ORTHO05D007719 7.5e-71 271.2 175 74.3
MELO3C003734.2 Cucumis melo HOM05D006215 ORTHO05D007719 1.3e-70 270.4 163 81.6
THA.LOC104811433 Tarenaya hassleriana HOM05D006215 ORTHO05D007719 2.8e-70 269.2 201 67.7
EL10Ac1g02129 Beta vulgaris HOM05D006215 ORTHO05D007719 8.3e-70 267.7 176 73.3
Aqoxy5G01831 Aquilegia oxysepala HOM05D006215 ORTHO05D007719 1.4e-69 266.9 176 72.2
unitig_32.g11202 Utricularia gibba HOM05D006215 ORTHO05D007719 1.8e-69 266.5 179 72.1
A07p28630 Brassica napus HOM05D006215 ORTHO05D007719 9.1e-69 264.2 184 70.1
A07p41490 Brassica napus HOM05D006215 ORTHO05D007719 9.1e-69 264.2 185 67.6
BraA07t30504Z Brassica rapa HOM05D006215 ORTHO05D007719 9.1e-69 264.2 184 70.1
BraA07t31681Z Brassica rapa HOM05D006215 ORTHO05D007719 9.1e-69 264.2 185 67.6
Oeu033622.1 Olea europaea HOM05D006215 ORTHO05D007719 9.1e-69 264.2 181 70.2
Actinidia15453 Actinidia chinensis HOM05D006215 ORTHO05D007719 1.6e-68 263.5 227 70.0
BcaB02g07052 Brassica carinata HOM05D006215 ORTHO05D007719 1.6e-68 263.5 183 68.9
BcaC08g45544 Brassica carinata HOM05D006215 ORTHO05D007719 2.0e-68 263.1 184 70.7
C06p32240 Brassica napus HOM05D006215 ORTHO05D007719 2.0e-68 263.1 184 70.7
BolC6t38347H Brassica oleracea HOM05D006215 ORTHO05D007719 2.0e-68 263.1 184 70.7
Thhalv10019087m.g Eutrema salsugineum HOM05D006215 ORTHO05D007719 7.7e-68 261.2 173 72.3
AT1G75980 Arabidopsis thaliana HOM05D006215 ORTHO05D007719 1.3e-67 260.4 173 71.7
BcaB05g24966 Brassica carinata HOM05D006215 ORTHO05D007719 1.1e-66 257.3 173 71.7
AL2G36000 Arabidopsis lyrata HOM05D006215 ORTHO05D007719 1.5e-66 256.9 172 71.5
Carub.0002s2287 Capsella rubella HOM05D006215 ORTHO05D007719 1.5e-66 256.9 173 71.7
Hund01696 Selenicereus undatus HOM05D006215 ORTHO05D007719 2.5e-66 256.1 177 70.1
Nitab4.5_0004361g0040 Nicotiana tabacum HOM05D006215 ORTHO05D007719 3.3e-66 255.8 143 85.3
C06p49900 Brassica napus HOM05D006215 ORTHO05D007719 9.5e-66 254.2 173 69.4
PSO339G6481 Papaver somniferum HOM05D006215 ORTHO05D007719 1.2e-65 253.8 182 70.9
Sp5g31100 Schrenkiella parvula HOM05D006215 ORTHO05D007719 2.1e-65 253.1 173 69.4
PSO384G0480 Papaver somniferum HOM05D006215 ORTHO05D007719 6.1e-65 251.5 182 70.3
Zm00001eb209250 Zea mays HOM05D006215 ORTHO05D007719 6.1e-65 251.5 172 66.3
BcaC08g47309 Brassica carinata HOM05D006215 ORTHO05D007719 8.0e-65 251.1 173 68.8
CARHR069510 Cardamine hirsuta HOM05D006215 ORTHO05D007719 2.3e-64 249.6 176 67.6
FvH4_3g18360 Fragaria vesca HOM05D006215 ORTHO05D007719 2.3e-64 249.6 152 76.3
ClCG05G015490 Citrullus lanatus HOM05D006215 ORTHO05D007719 4.0e-64 248.8 219 61.2
CDE04G3084 Ceratophyllum demersum HOM05D006215 ORTHO05D007719 5.2e-64 248.4 152 76.3
AUR62013912 Chenopodium quinoa HOM05D006215 ORTHO05D007719 8.9e-64 247.7 169 70.4
CiPaw.07G144900 Carya illinoinensis HOM05D006215 ORTHO05D007719 9.8e-63 244.2 151 78.8
Eucgr.F03725 Eucalyptus grandis HOM05D006215 ORTHO05D007719 4.5e-60 235.3 148 77.0
Peaxi162Scf00860g00212 Petunia axillaris HOM05D006215 ORTHO05D007719 1.9e-58 229.9 176 65.9
TPR.G38171 Trifolium pratense HOM05D006215 ORTHO05D007719 2.5e-58 229.6 133 81.2
Os02g0120400 Oryza sativa ssp. japonica HOM05D006215 ORTHO05D007719 8.0e-57 224.6 137 75.2
PGR083G2507 Punica granatum HOM05D006215 ORTHO05D007719 1.3e-54 217.2 181 64.1
Actinidia17011 Actinidia chinensis HOM05D006215 ORTHO05D007719 2.0e-52 209.9 160 68.8
ATR1088G027 Amborella trichopoda HOM05D006215 ORTHO05D007719 1.3e-51 207.2 151 70.9
TAR625G0502 Trochodendron aralioides HOM05D006215 ORTHO05D007719 1.1e-50 204.1 147 68.7
arahy.Tifrunner.gnm1.ann1.SEC0EX Arachis hypogaea HOM05D006215 ORTHO05D007719 2.8e-49 199.5 196 56.6
AUR62018279 Chenopodium quinoa HOM05D006215 ORTHO05D007719 3.6e-49 199.1 167 59.3
Duzib093G1443 Durio zibethinus HOM05D006215 ORTHO05D007719 3.4e-47 192.6 126 73.8
Pp3c20_3890 Physcomitrium patens HOM05D006215 ORTHO05D007719 2.4e-45 186.4 165 54.5
Mapoly0001s0313 Marchantia polymorpha HOM05D006215 ORTHO05D007719 9.2e-45 184.5 167 53.9
FAN21G0515 Fragaria x ananassa HOM05D006215 ORTHO05D007719 7.8e-44 181.4 186 52.2
Sc15g0004750 Simmondsia chinensis HOM05D006215 ORTHO05D007719 1.9e-42 176.8 128 67.2
SMO367G0408 Selaginella moellendorffii HOM05D006215 ORTHO05D007719 7.3e-42 174.9 168 50.0
Aa31LG4G6130 Aethionema arabicum HOM05D006215 ORTHO05D007719 4.0e-40 169.1 176 50.6
Cc10_g01280 Coffea canephora HOM05D006215 ORTHO05D007719 2.4e-37 159.8 93 76.3
Haze_22683 Corylus avellana HOM05D006215 ORTHO05D007719 4.3e-34 149.1 107 70.1
Eucgr.F03727 Eucalyptus grandis HOM05D006215 ORTHO05D007719 5.6e-34 148.7 85 80.0
SHI08014 Sapria himalayana HOM05D006215 ORTHO05D007719 2.1e-33 146.7 121 59.5
BolC6t40028H Brassica oleracea HOM05D006215 ORTHO05D007719 4.7e-33 145.6 123 58.5
CANSAT25G3730 Cannabis sativa HOM05D006215 ORTHO05D007719 6.2e-33 145.2 98 70.4
Cc10_g01290 Coffea canephora HOM05D006215 ORTHO05D007719 8.4e-30 134.8 84 75.0
Ah.06g187190 Amaranthus hybridus HOM05D006215 ORTHO05D007719 5.4e-29 132.1 114 59.6
SEGI_18034 Sequoiadendron giganteum HOM05D006215 ORTHO05D007719 2.4e-24 116.7 95 60.0
AagrBONN_evm.TU.Sc2ySwM_117.1002 Anthoceros agrestis HOM05D006215 ORTHO05D007719 1.2e-23 114.4 123 49.6
Glyma.02G160800 Glycine max HOM05D006215 ORTHO05D007719 4.4e-23 112.5 63 77.8
Carub.0005s0222 Capsella rubella HOM05D006215 ORTHO05D007719 9.9e-23 111.3 70 81.4
CBR_g54848 Chara braunii HOM05D006215 ORTHO05D007719 2.9e-22 109.8 129 45.7
Medtr6g083100 Medicago truncatula HOM05D006215 ORTHO05D007719 3.2e-21 106.3 120 50.0
BcaC03g15638 Brassica carinata HOM05D006215 ORTHO05D007719 1.5e-18 97.4 99 56.6
Lsat_1_v5_gn_4_111221 Lactuca sativa HOM05D006215 ORTHO05D007719 5.3e-16 89.0 54 77.8
C02p33520 Brassica napus HOM05D006215 ORTHO05D007719 1.3e-14 84.3 71 64.8
BolC2t09353H Brassica oleracea HOM05D006215 ORTHO05D007719 2.1e-12 77.0 71 60.6
MCO13G478 Micromonas commoda HOM05D006215 ORTHO05D007719 5.1e-11 72.4 109 33.0
MD11G1262900 Malus domestica HOM05D006215 ORTHO05D007719 3.3e-10 69.7 39 84.6
A02p20380 Brassica napus HOM05D006215 ORTHO05D007719 7.4e-10 68.6 48 70.8
TPR.G38152 Trifolium pratense HOM05D006215 ORTHO05D007719 1.4e-08 64.3 43 67.4


User provided reference genes

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