Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005666 Camellia sinensis var. sinensis HOM05D000522 ORTHO05D033858 2.8e-91 338.6 166 100.0
CSS0032661 Camellia sinensis var. sinensis HOM05D000522 ORTHO05D004380 3.7e-35 152.1 103 79.6
Rhsim03G0244700 Rhododendron simsii HOM05D000522 ORTHO05D004380 4.9e-32 141.7 103 74.8
vmacro06199 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 1.4e-31 140.2 103 73.8
CSS0022610 Camellia sinensis var. sinensis HOM05D000522 ORTHO05D004380 5.5e-31 138.3 103 70.9
Actinidia07420 Actinidia chinensis HOM05D000522 ORTHO05D004380 4.6e-30 135.2 103 70.9
Dinv41579 Davidia involucrata HOM05D000993 ORTHO05D004380 1.0e-29 134.0 101 71.3
Actinidia20339 Actinidia chinensis HOM05D000522 ORTHO05D004380 5.1e-29 131.7 103 68.0
Sc08g0007180 Simmondsia chinensis HOM05D000522 ORTHO05D004380 1.3e-27 127.1 103 66.0
Gohir.A07G003600 Gossypium hirsutum HOM05D000522 ORTHO05D004380 8.2e-27 124.4 103 64.1
FvH4_1g05350 Fragaria vesca HOM05D000522 ORTHO05D004380 1.1e-26 124.0 114 58.8
FAN19G1578 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.1e-26 124.0 114 58.8
FAN23G2543 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.1e-26 124.0 103 63.1
FAN26G0510 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.1e-26 124.0 103 63.1
FAN26G3074 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.1e-26 124.0 103 63.1
FAN28G2217 Fragaria x ananassa HOM05D000522 ORTHO05D004380 1.1e-26 124.0 103 63.1
Gohir.D07G004100 Gossypium hirsutum HOM05D000522 ORTHO05D004380 1.1e-26 124.0 103 64.1
Gorai.001G003700 Gossypium raimondii HOM05D000522 ORTHO05D004380 1.1e-26 124.0 103 64.1
MELO3C004545.2 Cucumis melo HOM05D000522 ORTHO05D004380 1.4e-26 123.6 103 63.1
CsaV3_2G002430 Cucumis sativus L. HOM05D000522 ORTHO05D004380 1.4e-26 123.6 103 62.1
Lj7A644G12 Lonicera japonica HOM05D000522 ORTHO05D004380 1.4e-26 123.6 103 61.2
CiPaw.04G167000 Carya illinoinensis HOM05D000522 ORTHO05D004380 1.8e-26 123.2 103 61.2
Duzib168G0832 Durio zibethinus HOM05D000522 ORTHO05D004380 1.8e-26 123.2 103 63.1
GSVIVG01015428001 Vitis vinifera HOM05D000522 ORTHO05D004380 1.8e-26 123.2 103 65.0
vmacro06197 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 3.1e-26 122.5 104 64.4
Thecc.09G114500 Theobroma cacao HOM05D000522 ORTHO05D004380 6.9e-26 121.3 103 64.1
Duzib150G0749 Durio zibethinus HOM05D000522 ORTHO05D004380 9.0e-26 120.9 103 63.1
RcHm_v2.0_Chr2g0091031 Rosa chinensis HOM05D000522 ORTHO05D004380 9.0e-26 120.9 103 62.1
COL.COLO4_34881 Corchorus olitorius HOM05D000522 ORTHO05D004380 1.2e-25 120.6 103 62.1
PGR102G1361 Punica granatum HOM05D000522 ORTHO05D004380 2.0e-25 119.8 103 61.2
Gohir.D13G202100 Gossypium hirsutum HOM05D000522 ORTHO05D004380 2.6e-25 119.4 103 61.2
Gorai.013G231000 Gossypium raimondii HOM05D000522 ORTHO05D004380 2.6e-25 119.4 103 61.2
MD15G1189500 Malus domestica HOM05D000522 ORTHO05D004380 2.6e-25 119.4 103 61.2
Sed0002571 Sechium edule HOM05D000522 ORTHO05D004380 2.6e-25 119.4 103 58.3
Cfa003289 Carpinus fangiana HOM05D000522 ORTHO05D004380 3.4e-25 119.0 103 61.2
Gohir.A13G196800 Gossypium hirsutum HOM05D000522 ORTHO05D004380 3.4e-25 119.0 103 61.2
Sed0015283 Sechium edule HOM05D000522 ORTHO05D004380 3.4e-25 119.0 103 59.2
Atru.chr7.1299 Acer truncatum HOM05D000522 ORTHO05D004380 4.5e-25 118.6 103 62.1
AUR62011027 Chenopodium quinoa HOM05D000522 ORTHO05D004380 4.5e-25 118.6 103 60.2
ClCG11G002610 Citrullus lanatus HOM05D000522 ORTHO05D004380 4.5e-25 118.6 103 60.2
Haze_25684 Corylus avellana HOM05D000522 ORTHO05D004380 4.5e-25 118.6 103 61.2
Glyma.05G232600 Glycine max HOM05D000522 ORTHO05D004380 4.5e-25 118.6 103 60.2
Medtr8g103840 Medicago truncatula HOM05D000522 ORTHO05D004380 4.5e-25 118.6 103 60.2
QL02p086017 Quercus lobata HOM05D000522 ORTHO05D004380 4.5e-25 118.6 103 63.1
TWI63G0481 Tripterygium wilfordii HOM05D000522 ORTHO05D004380 7.6e-25 117.9 102 60.8
Ca_17345_v3 Cicer arietinum L. HOM05D000522 ORTHO05D004380 1.3e-24 117.1 103 60.2
Oeu058085.3 Olea europaea HOM05D000522 ORTHO05D004380 1.3e-24 117.1 107 57.0
Sopen05g015250 Solanum pennellii HOM05D000522 ORTHO05D004380 1.3e-24 117.1 103 58.3
MD02G1056500 Malus domestica HOM05D000522 ORTHO05D004380 1.7e-24 116.7 103 60.2
TPR.G21700 Trifolium pratense HOM05D000522 ORTHO05D004380 1.7e-24 116.7 103 59.2
Glyma.08G040000 Glycine max HOM05D000522 ORTHO05D004380 2.2e-24 116.3 103 58.3
Nn8g39261 Nelumbo nucifera HOM05D000522 ORTHO05D004380 2.2e-24 116.3 103 60.2
Duzib187G0776 Durio zibethinus HOM05D000522 ORTHO05D004380 2.9e-24 115.9 103 61.2
Phvul.002G314900 Phaseolus vulgaris HOM05D000522 ORTHO05D004380 2.9e-24 115.9 103 59.2
Prupe.7G227300 Prunus persica HOM05D000522 ORTHO05D004380 2.9e-24 115.9 102 59.8
VMungo0251G1337 Vigna mungo HOM05D000522 ORTHO05D004380 2.9e-24 115.9 103 59.2
PSO782G3947 Papaver somniferum HOM05D000522 ORTHO05D004380 5.0e-24 115.2 103 60.2
Psat7g014120 Pisum sativum HOM05D000522 ORTHO05D004380 5.0e-24 115.2 103 58.3
Solyc05g018410.3 Solanum lycopersicum HOM05D000522 ORTHO05D004380 5.0e-24 115.2 103 57.3
Solyc05g018417.1 Solanum lycopersicum HOM05D000522 ORTHO05D004380 5.0e-24 115.2 103 57.3
Carub.0007s2921 Capsella rubella HOM05D000522 ORTHO05D004380 6.5e-24 114.8 103 59.2
CARHR218930 Cardamine hirsuta HOM05D000522 ORTHO05D004380 6.5e-24 114.8 103 59.2
Eucgr.C01076 Eucalyptus grandis HOM05D000522 ORTHO05D004380 8.4e-24 114.4 103 60.2
Aqoxy7G01827 Aquilegia oxysepala HOM05D000522 ORTHO05D004380 1.1e-23 114.0 103 58.3
arahy.Tifrunner.gnm1.ann1.E6IMKI Arachis hypogaea HOM05D000522 ORTHO05D004380 1.1e-23 114.0 103 58.3
arahy.Tifrunner.gnm1.ann1.R702JB Arachis hypogaea HOM05D000522 ORTHO05D004380 1.1e-23 114.0 103 58.3
Thhalv10025298m.g Eutrema salsugineum HOM05D000522 ORTHO05D004380 1.1e-23 114.0 103 58.3
Lalb_Chr16g0387971 Lupinus albus HOM05D000522 ORTHO05D004380 1.1e-23 114.0 103 57.3
Ah.09g227710 Amaranthus hybridus HOM05D000522 ORTHO05D004380 1.4e-23 113.6 100 60.0
AUR62033413 Chenopodium quinoa HOM05D000522 ORTHO05D004380 1.4e-23 113.6 103 57.3
PSO063G3875 Papaver somniferum HOM05D000522 ORTHO05D004380 1.4e-23 113.6 103 59.2
Lalb_Chr05g0222651 Lupinus albus HOM05D000522 ORTHO05D004380 1.9e-23 113.2 103 57.3
SalBow1G3152 Salvia bowleyana HOM05D000522 ORTHO05D004380 1.9e-23 113.2 103 57.3
Lj4g0021382 Lotus japonicus HOM05D000522 ORTHO05D004380 3.2e-23 112.5 103 57.3
Nitab4.5_0002705g0010 Nicotiana tabacum HOM05D000522 ORTHO05D004380 3.2e-23 112.5 103 56.3
AL3G39830 Arabidopsis lyrata HOM05D000522 ORTHO05D004380 4.2e-23 112.1 103 57.3
MBI04_g25412_MAGBIO Magnolia biondii HOM05D000522 ORTHO05D004380 4.2e-23 112.1 103 58.3
Cpa.g.sc23.137 Carica papaya HOM05D000522 ORTHO05D004380 5.5e-23 111.7 103 57.3
DCAR_012089 Daucus carota HOM05D000522 ORTHO05D004380 5.5e-23 111.7 102 57.8
HanXRQChr10g0317741 Helianthus annuus HOM05D000522 ORTHO05D004380 5.5e-23 111.7 103 56.3
vmacro11392 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 5.5e-23 111.7 111 58.6
Zm00001eb385980 Zea mays HOM05D000522 ORTHO05D004380 5.5e-23 111.7 102 56.9
Hund09185 Selenicereus undatus HOM05D000522 ORTHO05D004380 9.3e-23 110.9 103 56.3
BcaB03g16093 Brassica carinata HOM05D000522 ORTHO05D004380 1.2e-22 110.5 103 57.3
A04p08740 Brassica napus HOM05D000522 ORTHO05D004380 1.2e-22 110.5 103 57.3
BraA04t16571Z Brassica rapa HOM05D000522 ORTHO05D004380 1.2e-22 110.5 103 56.3
AUR62033399 Chenopodium quinoa HOM05D000522 ORTHO05D004380 1.2e-22 110.5 133 48.1
Nn2g11819 Nelumbo nucifera HOM05D000522 ORTHO05D004380 1.2e-22 110.5 102 56.9
Sp7g10940 Schrenkiella parvula HOM05D000522 ORTHO05D004380 1.2e-22 110.5 103 56.3
THA.LOC104808747 Tarenaya hassleriana HOM05D000522 ORTHO05D004380 1.2e-22 110.5 103 59.2
AT4G13360 Arabidopsis thaliana HOM05D000522 ORTHO05D004380 1.6e-22 110.2 103 55.3
EL10Ac8g18536 Beta vulgaris HOM05D000522 ORTHO05D004380 1.6e-22 110.2 96 59.4
CAN.G32.1 Capsicum annuum HOM05D000522 ORTHO05D004380 1.6e-22 110.2 103 54.4
Carub.0003s2470 Capsella rubella HOM05D000522 ORTHO05D004380 2.1e-22 109.8 103 56.3
CARHR100460 Cardamine hirsuta HOM05D000522 ORTHO05D004380 2.1e-22 109.8 103 58.3
Nitab4.5_0008625g0010 Nicotiana tabacum HOM05D000522 ORTHO05D004380 2.1e-22 109.8 103 55.3
Peaxi162Scf00552g00512 Petunia axillaris HOM05D000522 ORTHO05D004380 2.1e-22 109.8 89 60.7
BcaB03g14587 Brassica carinata HOM05D000522 ORTHO05D004380 2.7e-22 109.4 103 55.3
CANSAT56G3220 Cannabis sativa HOM05D000522 ORTHO05D004380 2.7e-22 109.4 103 56.3
CANSAT56G3667 Cannabis sativa HOM05D000522 ORTHO05D004380 2.7e-22 109.4 103 56.3
ECA236G2754 Erigeron canadensis HOM05D000522 ORTHO05D004380 2.7e-22 109.4 103 56.3
HanXRQChr05g0138321 Helianthus annuus HOM05D000522 ORTHO05D004380 2.7e-22 109.4 103 55.3
Sp3g22170 Schrenkiella parvula HOM05D000522 ORTHO05D004380 2.7e-22 109.4 103 56.3
ATR0037G022 Amborella trichopoda HOM05D000522 ORTHO05D004380 3.5e-22 109.0 103 55.3
AL9U10300 Arabidopsis lyrata HOM05D000522 ORTHO05D004380 3.5e-22 109.0 103 56.3
HanXRQChr10g0317641 Helianthus annuus HOM05D000522 ORTHO05D004380 3.5e-22 109.0 119 49.6
Peaxi162Scf00560g00617 Petunia axillaris HOM05D000522 ORTHO05D004380 3.5e-22 109.0 103 57.3
Lsat_1_v5_gn_5_100220 Lactuca sativa HOM05D000522 ORTHO05D004380 6.1e-22 108.2 103 55.3
PSO210G0429 Papaver somniferum HOM05D000522 ORTHO05D004380 6.1e-22 108.2 103 57.3
Hund26120 Selenicereus undatus HOM05D000522 ORTHO05D004380 7.9e-22 107.8 101 58.4
BcaC01g03316 Brassica carinata HOM05D000522 ORTHO05D004380 1.0e-21 107.5 103 54.4
BcaC02g09431 Brassica carinata HOM05D000522 ORTHO05D004380 1.0e-21 107.5 103 55.3
BolC4t25830H Brassica oleracea HOM05D000522 ORTHO05D004380 1.0e-21 107.5 103 55.3
HanXRQChr13g0424731 Helianthus annuus HOM05D000522 ORTHO05D004380 1.0e-21 107.5 103 54.4
A03p43630 Brassica napus HOM05D000522 ORTHO05D004380 1.3e-21 107.1 103 54.4
Ciclev10008327m.g Citrus clementina HOM05D000522 ORTHO05D004380 1.3e-21 107.1 103 56.3
Nitab4.5_0008529g0010 Nicotiana tabacum HOM05D000522 ORTHO05D004380 1.3e-21 107.1 103 54.4
AUR62033410 Chenopodium quinoa HOM05D000522 ORTHO05D004380 1.8e-21 106.7 108 51.9
Psat7g012360 Pisum sativum HOM05D000522 ORTHO05D004380 1.8e-21 106.7 103 55.3
Thhalv10002535m.g Eutrema salsugineum HOM05D000522 ORTHO05D004380 2.3e-21 106.3 103 55.3
vmacro08116 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 2.3e-21 106.3 148 45.3
C03p53740 Brassica napus HOM05D000522 ORTHO05D004380 3.0e-21 105.9 103 54.4
BolC3t17634H Brassica oleracea HOM05D000522 ORTHO05D004380 3.0e-21 105.9 103 54.4
Manes.03G069100 Manihot esculenta HOM05D000522 ORTHO05D004380 3.0e-21 105.9 103 54.4
AT3G24360 Arabidopsis thaliana HOM05D000522 ORTHO05D004380 3.9e-21 105.5 103 54.4
C04p42550 Brassica napus HOM05D000522 ORTHO05D004380 3.9e-21 105.5 103 54.4
BraA03t13500Z Brassica rapa HOM05D000522 ORTHO05D004380 3.9e-21 105.5 103 54.4
Lsat_1_v5_gn_8_94761 Lactuca sativa HOM05D000522 ORTHO05D004380 3.9e-21 105.5 102 52.9
Nitab4.5_0002363g0030 Nicotiana tabacum HOM05D000522 ORTHO05D004380 3.9e-21 105.5 103 53.4
TAR383G0974 Trochodendron aralioides HOM05D000522 ORTHO05D004380 3.9e-21 105.5 103 59.2
unitig_46.g18395 Utricularia gibba HOM05D000522 ORTHO05D004380 3.9e-21 105.5 103 51.5
MSTRG.26353 Avicennia marina HOM05D000522 ORTHO05D004380 5.1e-21 105.1 103 53.4
Cc06_g09360 Coffea canephora HOM05D000522 ORTHO05D004380 5.1e-21 105.1 103 55.3
SGA_v2.0_scaffold183G39892 Striga asiatica HOM05D000522 ORTHO05D004380 5.1e-21 105.1 103 52.4
Migut.K00465 Erythranthe guttata HOM05D000522 ORTHO05D004380 6.7e-21 104.8 103 53.4
Aa31LG9G4380 Aethionema arabicum HOM05D000522 ORTHO05D004380 1.1e-20 104.0 103 55.3
Potri.006G155700 Populus trichocarpa HOM05D000522 ORTHO05D004380 1.1e-20 104.0 102 54.9
Potri.006G156350 Populus trichocarpa HOM05D000522 ORTHO05D004380 1.1e-20 104.0 102 54.9
Sabra06G0123500 Salix brachista HOM05D000522 ORTHO05D004380 1.1e-20 104.0 102 54.9
Os06g0594100 Oryza sativa ssp. japonica HOM05D000522 ORTHO05D004380 1.9e-20 103.2 103 53.4
Aa31LG8G11100 Aethionema arabicum HOM05D000522 ORTHO05D004380 3.3e-20 102.4 103 52.4
CAN.G300.3 Capsicum annuum HOM05D000522 ORTHO05D004380 3.3e-20 102.4 103 52.4
AUR62011039 Chenopodium quinoa HOM05D000522 ORTHO05D004380 3.3e-20 102.4 103 55.3
ECA234G1779 Erigeron canadensis HOM05D000522 ORTHO05D004380 7.4e-20 101.3 103 52.4
Sopen07g011860 Solanum pennellii HOM05D000522 ORTHO05D004380 6.3e-19 98.2 103 47.6
Aqoxy7G03774 Aquilegia oxysepala HOM05D000522 ORTHO05D004380 1.1e-18 97.4 103 50.5
RcHm_v2.0_Chr2g0092761 Rosa chinensis HOM05D000522 ORTHO05D004380 1.8e-18 96.7 107 51.4
RcHm_v2.0_Chr2g0092831 Rosa chinensis HOM05D000522 ORTHO05D004380 1.8e-18 96.7 107 51.4
CDE02G2108 Ceratophyllum demersum HOM05D000522 ORTHO05D004380 3.1e-18 95.9 103 51.5
Eucgr.C04134 Eucalyptus grandis HOM05D000522 ORTHO05D004380 3.1e-18 95.9 113 48.7
SEGI_36085 Sequoiadendron giganteum HOM05D000522 ORTHO05D004380 3.1e-18 95.9 102 50.0
Oeu055871.1 Olea europaea HOM05D000522 ORTHO05D004380 7.7e-17 91.3 125 43.2
SMO147G0048 Selaginella moellendorffii HOM05D000522 ORTHO05D004380 7.7e-17 91.3 101 47.5
CSS0031762 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 5.0e-16 88.6 43 97.7
Pp3c2_2910 Physcomitrium patens HOM05D000522 ORTHO05D004380 2.5e-15 86.3 103 44.7
HPP92_006445 Vanilla planifolia HOM05D000522 ORTHO05D004380 4.2e-15 85.5 102 48.0
Lj7C643G7 Lonicera japonica HOM05D000522 ORTHO05D004380 1.2e-14 84.0 86 52.3
vmacro11394 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 1.2e-14 84.0 98 54.1
vmacro06198 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 2.7e-14 82.8 93 53.8
Pp3c14_25790 Physcomitrium patens HOM05D000522 ORTHO05D004380 1.4e-13 80.5 103 44.7
vmacro08382 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 1.4e-13 80.5 106 49.1
AagrBONN_evm.TU.Sc2ySwM_340.302 Anthoceros agrestis HOM05D000522 ORTHO05D004380 2.0e-12 76.6 111 39.6
Mapoly0126s0026 Marchantia polymorpha HOM05D000522 ORTHO05D004380 9.7e-12 74.3 103 42.7
HanXRQChr13g0424741 Helianthus annuus HOM05D000522 ORTHO05D033858 3.7e-11 72.4 45 73.3
vmacro06196 Vaccinium macrocarpon HOM05D000522 ORTHO05D033858 1.4e-10 70.5 96 46.9
Rhsim03G0245800 Rhododendron simsii HOM05D000007 ORTHO05D013648 2.9e-08 62.8 58 58.6
QL02p086054 Quercus lobata HOM05D000522 ORTHO05D004380 3.8e-08 62.4 81 45.7
FvH4_1g04450 Fragaria vesca HOM05D000522 ORTHO05D004380 8.5e-08 61.2 53 58.5
CSS0007712 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 4.2e-07 58.9 143 30.8
CSS0000180 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 5.5e-07 58.5 143 30.8
CSS0003368 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 7.2e-07 58.2 34 82.4
CSS0006742 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 7.2e-07 58.2 34 82.4
CSS0009901 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 7.2e-07 58.2 34 82.4
CSS0037282 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 7.2e-07 58.2 34 82.4
CSS0019405 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 1.2e-06 57.4 34 82.4


User provided reference genes

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