Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005656 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D017170 4.0e-60 234.6 118 100.0
CSS0014706 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D017170 4.9e-18 94.7 107 55.1
CSS0015374 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D005207 2.1e-16 89.4 49 83.7
Lsat_1_v5_gn_5_8920 Lactuca sativa HOM05D003206 ORTHO05D005207 3.3e-14 82.0 62 66.1
Eucgr.F03908 Eucalyptus grandis HOM05D003206 ORTHO05D005207 4.3e-14 81.6 49 75.5
Cc04_g04590 Coffea canephora HOM05D003206 ORTHO05D005207 9.6e-14 80.5 49 77.6
Ah.01g020430 Amaranthus hybridus HOM05D003206 ORTHO05D005207 1.3e-13 80.1 49 71.4
ECA247G4132 Erigeron canadensis HOM05D003206 ORTHO05D005207 2.8e-13 79.0 63 65.1
Oeu004214.1 Olea europaea HOM05D003206 ORTHO05D005207 2.8e-13 79.0 49 73.5
Actinidia01729 Actinidia chinensis HOM05D003206 ORTHO05D017170 3.7e-13 78.6 49 73.5
Actinidia03225 Actinidia chinensis HOM05D003206 ORTHO05D005207 3.7e-13 78.6 49 73.5
Actinidia18218 Actinidia chinensis HOM05D003206 ORTHO05D005207 4.8e-13 78.2 48 75.0
AUR62016312 Chenopodium quinoa HOM05D003206 ORTHO05D005207 4.8e-13 78.2 49 73.5
Nitab4.5_0003072g0120 Nicotiana tabacum HOM05D003206 ORTHO05D005207 4.8e-13 78.2 49 73.5
Nitab4.5_0004013g0050 Nicotiana tabacum HOM05D003206 ORTHO05D005207 4.8e-13 78.2 49 73.5
Oeu018801.1 Olea europaea HOM05D003206 ORTHO05D005207 4.8e-13 78.2 49 73.5
Peaxi162Scf00553g00628 Petunia axillaris HOM05D003206 ORTHO05D005207 4.8e-13 78.2 49 73.5
Solyc03g117490.4 Solanum lycopersicum HOM05D003206 ORTHO05D005207 4.8e-13 78.2 49 71.4
Sopen03g036390 Solanum pennellii HOM05D003206 ORTHO05D005207 4.8e-13 78.2 49 71.4
PGSC0003DMG400014144 Solanum tuberosum HOM05D003206 ORTHO05D005207 4.8e-13 78.2 49 71.4
CiPaw.01G250100 Carya illinoinensis HOM05D003206 ORTHO05D005207 6.2e-13 77.8 49 71.4
Duzib192G0877 Durio zibethinus HOM05D003206 ORTHO05D005207 6.2e-13 77.8 49 73.5
Hma1.2p1_0461F.1_g157780 Hydrangea macrophylla HOM05D003206 ORTHO05D005207 6.2e-13 77.8 49 73.5
EL10Ac9g21895 Beta vulgaris HOM05D003206 ORTHO05D005207 8.1e-13 77.4 63 61.9
Lj5A75T45 Lonicera japonica HOM05D003206 ORTHO05D005207 8.1e-13 77.4 49 73.5
Lalb_Chr25g0279091 Lupinus albus HOM05D003206 ORTHO05D005207 8.1e-13 77.4 63 58.7
MBI14_g04912_MAGBIO Magnolia biondii HOM05D003206 ORTHO05D005207 8.1e-13 77.4 63 63.5
Nn8g39607 Nelumbo nucifera HOM05D003206 ORTHO05D005207 8.1e-13 77.4 49 75.5
CAN.G407.13 Capsicum annuum HOM05D003206 ORTHO05D005207 1.4e-12 76.6 49 71.4
Dinv38137 Davidia involucrata HOM05D003206 ORTHO05D005207 1.4e-12 76.6 49 69.4
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 1.4e-12 76.6 62 64.5
HanXRQChr02g0034821 Helianthus annuus HOM05D003206 ORTHO05D005207 1.4e-12 76.6 49 71.4
Manes.11G060600 Manihot esculenta HOM05D003206 ORTHO05D005207 1.4e-12 76.6 49 69.4
SalBow6G0819 Salvia bowleyana HOM05D003206 ORTHO05D005207 1.4e-12 76.6 49 71.4
GSVIVG01017422001 Vitis vinifera HOM05D003206 ORTHO05D005207 1.4e-12 76.6 49 71.4
PGR102G2366 Punica granatum HOM05D003206 ORTHO05D005207 1.8e-12 76.3 63 58.7
TAR626G1759 Trochodendron aralioides HOM05D003206 ORTHO05D005207 2.4e-12 75.9 49 69.4
Cpa.g.sc10.151 Carica papaya HOM05D003206 ORTHO05D005207 3.1e-12 75.5 49 67.3
CDE02G1563 Ceratophyllum demersum HOM05D003206 ORTHO05D005207 3.1e-12 75.5 49 71.4
CDE04G3165 Ceratophyllum demersum HOM05D003206 ORTHO05D005207 3.1e-12 75.5 49 73.5
AUR62011496 Chenopodium quinoa HOM05D003206 ORTHO05D005207 3.1e-12 75.5 63 61.9
MD09G1222300 Malus domestica HOM05D003206 ORTHO05D005207 3.1e-12 75.5 49 69.4
MD17G1215600 Malus domestica HOM05D003206 ORTHO05D005207 3.1e-12 75.5 49 69.4
Medtr4g009920 Medicago truncatula HOM05D003206 ORTHO05D005207 3.1e-12 75.5 49 69.4
RcHm_v2.0_Chr2g0134571 Rosa chinensis HOM05D003206 ORTHO05D005207 3.1e-12 75.5 49 69.4
Thecc.06G031800 Theobroma cacao HOM05D003206 ORTHO05D005207 3.1e-12 75.5 49 69.4
Haze_12952 Corylus avellana HOM05D003206 ORTHO05D005207 4.0e-12 75.1 49 69.4
Migut.I00744 Erythranthe guttata HOM05D003206 ORTHO05D005207 4.0e-12 75.1 49 69.4
Prupe.3G091800 Prunus persica HOM05D003206 ORTHO05D005207 4.0e-12 75.1 49 67.3
THA.LOC104812468 Tarenaya hassleriana HOM05D003206 ORTHO05D005207 4.0e-12 75.1 63 58.7
unitig_27.g24951 Utricularia gibba HOM05D003206 ORTHO05D017170 4.0e-12 75.1 49 67.3
vmacro19016 Vaccinium macrocarpon HOM05D003206 ORTHO05D005207 4.0e-12 75.1 49 71.4
Aqoxy133s002 Aquilegia oxysepala HOM05D003206 ORTHO05D017170 5.3e-12 74.7 63 60.3
Aqoxy7G03604 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 5.3e-12 74.7 63 60.3
Ciclev10025360m.g Citrus clementina HOM05D003206 ORTHO05D005207 5.3e-12 74.7 49 67.3
Lsat_1_v5_gn_1_31380 Lactuca sativa HOM05D003206 ORTHO05D005207 5.3e-12 74.7 59 61.0
Lalb_Chr01g0012271 Lupinus albus HOM05D003206 ORTHO05D005207 5.3e-12 74.7 63 58.7
BcaC03g15965 Brassica carinata HOM05D003206 ORTHO05D005207 6.9e-12 74.3 63 60.3
A02p23540 Brassica napus HOM05D003206 ORTHO05D005207 6.9e-12 74.3 63 60.3
C02p37310 Brassica napus HOM05D003206 ORTHO05D005207 6.9e-12 74.3 63 60.3
BolC2t09741H Brassica oleracea HOM05D003206 ORTHO05D005207 6.9e-12 74.3 63 60.3
BraA02t07347Z Brassica rapa HOM05D003206 ORTHO05D005207 6.9e-12 74.3 63 60.3
FvH4_6g29330 Fragaria vesca HOM05D003206 ORTHO05D005207 6.9e-12 74.3 49 65.3
FAN02G2065 Fragaria x ananassa HOM05D003206 ORTHO05D005207 6.9e-12 74.3 49 65.3
FAN02G2439 Fragaria x ananassa HOM05D003206 ORTHO05D005207 6.9e-12 74.3 49 65.3
FAN05G2875 Fragaria x ananassa HOM05D003206 ORTHO05D005207 6.9e-12 74.3 49 65.3
FAN09G0310 Fragaria x ananassa HOM05D003206 ORTHO05D005207 6.9e-12 74.3 49 65.3
FAN14G4723 Fragaria x ananassa HOM05D003206 ORTHO05D005207 6.9e-12 74.3 49 65.3
Phvul.010G157400 Phaseolus vulgaris HOM05D003206 ORTHO05D005207 6.9e-12 74.3 63 57.1
Rhsim08G0211000 Rhododendron simsii HOM05D003206 ORTHO05D005207 6.9e-12 74.3 63 60.3
SGA_v2.0_scaffold5G02725 Striga asiatica HOM05D003206 ORTHO05D005207 6.9e-12 74.3 49 69.4
BcaB02g07269 Brassica carinata HOM05D003206 ORTHO05D005207 9.0e-12 73.9 63 60.3
BcaC08g45315 Brassica carinata HOM05D003206 ORTHO05D005207 9.0e-12 73.9 63 60.3
A07p26680 Brassica napus HOM05D003206 ORTHO05D005207 9.0e-12 73.9 63 60.3
A07p45230 Brassica napus HOM05D003206 ORTHO05D005207 9.0e-12 73.9 63 60.3
C06p29160 Brassica napus HOM05D003206 ORTHO05D005207 9.0e-12 73.9 63 60.3
BolC6t38080H Brassica oleracea HOM05D003206 ORTHO05D005207 9.0e-12 73.9 63 60.3
BraA07t30311Z Brassica rapa HOM05D003206 ORTHO05D005207 9.0e-12 73.9 63 60.3
BraA07t32026Z Brassica rapa HOM05D003206 ORTHO05D005207 9.0e-12 73.9 63 60.3
Duzib160G0518 Durio zibethinus HOM05D003206 ORTHO05D005207 9.0e-12 73.9 49 69.4
Sp5g35360 Schrenkiella parvula HOM05D003206 ORTHO05D005207 9.0e-12 73.9 49 67.3
Aa31LG4G720 Aethionema arabicum HOM05D003206 ORTHO05D005207 1.2e-11 73.6 49 67.3
AL2G41040 Arabidopsis lyrata HOM05D003206 ORTHO05D005207 1.2e-11 73.6 63 58.7
AT1G80460 Arabidopsis thaliana HOM05D003206 ORTHO05D005207 1.2e-11 73.6 63 58.7
MSTRG.11155 Avicennia marina HOM05D003206 ORTHO05D005207 1.2e-11 73.6 49 67.3
BcaB02g08684 Brassica carinata HOM05D003206 ORTHO05D005207 1.2e-11 73.6 63 58.7
C06p54070 Brassica napus HOM05D003206 ORTHO05D005207 1.2e-11 73.6 63 58.7
BolC6t40420H Brassica oleracea HOM05D003206 ORTHO05D005207 1.2e-11 73.6 63 58.7
Eucgr.J03080 Eucalyptus grandis HOM05D003206 ORTHO05D005207 1.2e-11 73.6 49 67.3
Thhalv10018399m.g Eutrema salsugineum HOM05D003206 ORTHO05D005207 1.2e-11 73.6 63 58.7
Glyma.07G028600 Glycine max HOM05D003206 ORTHO05D005207 1.2e-11 73.6 63 57.1
Gohir.A06G115200 Gossypium hirsutum HOM05D003206 ORTHO05D005207 1.2e-11 73.6 49 69.4
Gohir.D06G120000 Gossypium hirsutum HOM05D003206 ORTHO05D005207 1.2e-11 73.6 49 69.4
Gorai.010G138000 Gossypium raimondii HOM05D003206 ORTHO05D005207 1.2e-11 73.6 49 69.4
PSO017G7051 Papaver somniferum HOM05D003206 ORTHO05D005207 1.2e-11 73.6 63 58.7
PSO170G1430 Papaver somniferum HOM05D003206 ORTHO05D005207 1.2e-11 73.6 63 58.7
Sabra03G0017400 Salix brachista HOM05D003206 ORTHO05D005207 1.2e-11 73.6 63 58.7
Atru.chr1.2868 Acer truncatum HOM05D003206 ORTHO05D005207 1.5e-11 73.2 49 65.3
Ca_12518_v3 Cicer arietinum L. HOM05D003206 ORTHO05D005207 1.5e-11 73.2 63 57.1
COL.COLO4_11866 Corchorus olitorius HOM05D003206 ORTHO05D005207 1.5e-11 73.2 49 65.3
Nn2g12167 Nelumbo nucifera HOM05D003206 ORTHO05D005207 1.5e-11 73.2 63 60.3
Hund06548 Selenicereus undatus HOM05D003206 ORTHO05D005207 1.5e-11 73.2 49 67.3
VMungo0331G1864 Vigna mungo HOM05D003206 ORTHO05D005207 1.5e-11 73.2 63 57.1
BcaB05g25268 Brassica carinata HOM05D003206 ORTHO05D005207 2.0e-11 72.8 49 67.3
ClCG09G003080 Citrullus lanatus HOM05D003206 ORTHO05D005207 2.0e-11 72.8 49 67.3
Lj3g0014011 Lotus japonicus HOM05D003206 ORTHO05D005207 2.0e-11 72.8 63 57.1
TAR383G0666 Trochodendron aralioides HOM05D003206 ORTHO05D005207 2.0e-11 72.8 49 65.3
HPP92_026428 Vanilla planifolia HOM05D003206 ORTHO05D005207 2.0e-11 72.8 49 65.3
arahy.Tifrunner.gnm1.ann1.ZMG720 Arachis hypogaea HOM05D003206 ORTHO05D005207 2.6e-11 72.4 49 63.3
CARHR074790 Cardamine hirsuta HOM05D003206 ORTHO05D005207 4.5e-11 71.6 63 55.6
Ciclev10020202m.g Citrus clementina HOM05D003206 ORTHO05D005207 4.5e-11 71.6 45 71.1
CsaV3_7G032210 Cucumis sativus L. HOM05D003206 ORTHO05D005207 4.5e-11 71.6 49 65.3
DCAR_016275 Daucus carota HOM05D003206 ORTHO05D005207 4.5e-11 71.6 48 66.7
Dinv30630 Davidia involucrata HOM05D003206 ORTHO05D005207 4.5e-11 71.6 49 67.3
TPR.G38649 Trifolium pratense HOM05D003206 ORTHO05D005207 4.5e-11 71.6 63 57.1
MSTRG.4700 Avicennia marina HOM05D003206 ORTHO05D005207 5.8e-11 71.2 49 63.3
Carub.0002s2712 Capsella rubella HOM05D003206 ORTHO05D005207 5.8e-11 71.2 63 57.1
MELO3C023442.2 Cucumis melo HOM05D003206 ORTHO05D005207 5.8e-11 71.2 49 65.3
Os04g0647800 Oryza sativa ssp. japonica HOM05D003206 ORTHO05D005207 7.6e-11 70.9 49 63.3
Potri.003G030900 Populus trichocarpa HOM05D003206 ORTHO05D005207 7.6e-11 70.9 49 63.3
FAN02G3805 Fragaria x ananassa HOM05D003206 ORTHO05D005207 9.9e-11 70.5 94 45.7
QL05p032185 Quercus lobata HOM05D003206 ORTHO05D005207 9.9e-11 70.5 49 67.3
arahy.Tifrunner.gnm1.ann1.TT8CUF Arachis hypogaea HOM05D003206 ORTHO05D005207 1.3e-10 70.1 63 54.0
Sed0019835 Sechium edule HOM05D003206 ORTHO05D005207 1.3e-10 70.1 49 63.3
TPR.G12167 Trifolium pratense HOM05D003206 ORTHO05D005207 1.3e-10 70.1 63 58.7
TWI12G0864 Tripterygium wilfordii HOM05D003206 ORTHO05D005207 1.3e-10 70.1 49 63.3
unitig_699.g19091 Utricularia gibba HOM05D003206 ORTHO05D005207 1.3e-10 70.1 45 68.9
ATR0767G098 Amborella trichopoda HOM05D003206 ORTHO05D005207 2.2e-10 69.3 63 58.7
Duzib235G0619 Durio zibethinus HOM05D003206 ORTHO05D005207 2.2e-10 69.3 77 51.9
Aqoxy7G03605 Aquilegia oxysepala HOM05D003206 ORTHO05D017170 2.9e-10 68.9 49 63.3
Psat7g257640 Pisum sativum HOM05D003206 ORTHO05D005207 2.9e-10 68.9 59 57.6
Aqoxy7G02449 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 3.8e-10 68.6 50 68.0
FvH4_6g29340 Fragaria vesca HOM05D003206 ORTHO05D005207 3.8e-10 68.6 53 58.5
FAN09G0009 Fragaria x ananassa HOM05D003206 ORTHO05D005207 3.8e-10 68.6 94 44.7
Ciclev10025756m.g Citrus clementina HOM05D003206 ORTHO05D005207 6.4e-10 67.8 49 65.3
TPR.G38684 Trifolium pratense HOM05D003206 ORTHO05D005207 8.4e-10 67.4 49 59.2
DCAR_025524 Daucus carota HOM05D003206 ORTHO05D005207 3.2e-09 65.5 62 53.2
AagrBONN_evm.TU.Sc2ySwM_228.3101 Anthoceros agrestis HOM05D003206 ORTHO05D005207 4.2e-09 65.1 49 57.1
Lalb_Chr04g0262301 Lupinus albus HOM05D003206 ORTHO05D005207 4.2e-09 65.1 59 55.9
ATR0810G084 Amborella trichopoda HOM05D003206 ORTHO05D017170 9.3e-09 63.9 63 54.0
CANSAT56G2846 Cannabis sativa HOM05D003206 ORTHO05D005207 2.1e-08 62.8 45 62.2
QL05p032218 Quercus lobata HOM05D003206 ORTHO05D005207 2.7e-08 62.4 49 57.1
Lsat_1_v5_gn_8_93800 Lactuca sativa HOM05D003206 ORTHO05D024104 3.5e-08 62.0 38 71.1
SEGI_06294 Sequoiadendron giganteum HOM05D003206 ORTHO05D005207 3.0e-07 58.9 63 52.4
Zm00001eb068580 Zea mays HOM05D003206 ORTHO05D005207 6.7e-07 57.8 49 53.1
HPP92_009998 Vanilla planifolia HOM05D003206 ORTHO05D017170 8.7e-07 57.4 49 53.1
HPP92_015257 Vanilla planifolia HOM05D003206 ORTHO05D017170 1.1e-06 57.0 64 46.9
CBR_g30419 Chara braunii HOM05D003206 ORTHO05D005207 1.9e-06 56.2 47 51.1
CBR_g36912 Chara braunii HOM05D003206 ORTHO05D005207 1.9e-06 56.2 47 51.1
CSS0004619 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D024104 7.4e-06 54.3 32 81.2


User provided reference genes

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