Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005611 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 4.9e-76 287.7 145 100.0
CSS0025796 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 2.1e-55 219.2 145 80.0
CSS0012854 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 2.4e-54 215.7 118 91.5
CSS0014542 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 6.8e-54 214.2 145 81.4
CSS0035788 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 6.4e-52 207.6 145 78.6
CSS0044643 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 1.0e-49 200.3 136 77.9
CSS0020186 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 4.3e-48 194.9 136 75.7
CSS0009838 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 3.5e-34 148.7 105 78.1
RhsimUnG0020700 Rhododendron simsii HOM05D003429 ORTHO05D003873 1.1e-27 127.1 105 65.7
Actinidia13982 Actinidia chinensis HOM05D003429 ORTHO05D003873 1.4e-27 126.7 105 63.8
Actinidia14028 Actinidia chinensis HOM05D003429 ORTHO05D003873 1.4e-27 126.7 105 63.8
Actinidia17975 Actinidia chinensis HOM05D003429 ORTHO05D003873 1.4e-27 126.7 105 63.8
Actinidia37867 Actinidia chinensis HOM05D003429 ORTHO05D003873 1.4e-27 126.7 105 63.8
vmacro07588 Vaccinium macrocarpon HOM05D003429 ORTHO05D003873 1.4e-27 126.7 105 64.8
Solyc01g056520.3 Solanum lycopersicum HOM05D003429 ORTHO05D003873 5.8e-21 104.8 125 54.4
Sopen01g020360 Solanum pennellii HOM05D003429 ORTHO05D003873 5.8e-21 104.8 125 54.4
Cpa.g.sc33.148 Carica papaya HOM05D003429 ORTHO05D003873 1.7e-20 103.2 100 61.0
Peaxi162Scf00139g01028 Petunia axillaris HOM05D003429 ORTHO05D003873 2.2e-20 102.8 100 61.0
Nitab4.5_0002094g0090 Nicotiana tabacum HOM05D003429 ORTHO05D003873 2.9e-20 102.4 125 52.8
Cfa010982 Carpinus fangiana HOM05D003429 ORTHO05D003873 3.8e-20 102.1 100 60.0
Lj9A653G52 Lonicera japonica HOM05D003429 ORTHO05D003873 3.8e-20 102.1 100 58.0
MD02G1207800 Malus domestica HOM05D003429 ORTHO05D003873 3.8e-20 102.1 100 57.0
Prupe.2G050900 Prunus persica HOM05D003429 ORTHO05D003873 3.8e-20 102.1 100 58.0
Prupe.2G051400 Prunus persica HOM05D003429 ORTHO05D003873 3.8e-20 102.1 100 58.0
CiPaw.13G018300 Carya illinoinensis HOM05D003429 ORTHO05D003873 4.9e-20 101.7 100 59.0
GSVIVG01012453001 Vitis vinifera HOM05D003429 ORTHO05D003873 4.9e-20 101.7 89 64.0
Nitab4.5_0000211g0060 Nicotiana tabacum HOM05D003429 ORTHO05D003873 6.5e-20 101.3 125 52.8
Potri.001G036100 Populus trichocarpa HOM05D003429 ORTHO05D003873 8.4e-20 100.9 100 60.0
PGR031G2936 Punica granatum HOM05D003429 ORTHO05D003873 8.4e-20 100.9 100 59.0
Sabra01G0025100 Salix brachista HOM05D003429 ORTHO05D003873 8.4e-20 100.9 100 60.0
Migut.B01173 Erythranthe guttata HOM05D003429 ORTHO05D003873 1.1e-19 100.5 100 60.0
Dinv03754 Davidia involucrata HOM05D003429 ORTHO05D003873 1.9e-19 99.8 99 58.6
MBI19_g25231_MAGBIO Magnolia biondii HOM05D003429 ORTHO05D003873 1.9e-19 99.8 89 60.7
Nn7g37083 Nelumbo nucifera HOM05D003429 ORTHO05D003873 1.9e-19 99.8 88 61.4
Dinv04984 Davidia involucrata HOM05D003429 ORTHO05D003873 2.5e-19 99.4 100 59.0
Aqoxy1G01517 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 3.2e-19 99.0 89 60.7
Potri.003G189500 Populus trichocarpa HOM05D003429 ORTHO05D003873 3.2e-19 99.0 100 59.0
Lalb_Chr11g0061181 Lupinus albus HOM05D003429 ORTHO05D003873 4.2e-19 98.6 100 58.0
ECA248G1206 Erigeron canadensis HOM05D003429 ORTHO05D003873 5.5e-19 98.2 108 55.6
Glyma.04G003000 Glycine max HOM05D003429 ORTHO05D003873 5.5e-19 98.2 101 57.4
Psat5g001960 Pisum sativum HOM05D003429 ORTHO05D003873 5.5e-19 98.2 101 56.4
Atru.chr12.1194 Acer truncatum HOM05D003429 ORTHO05D003873 7.1e-19 97.8 100 57.0
Lj1g0005148 Lotus japonicus HOM05D003429 ORTHO05D003873 7.1e-19 97.8 101 57.4
arahy.Tifrunner.gnm1.ann1.3RNG04 Arachis hypogaea HOM05D003429 ORTHO05D003873 9.3e-19 97.4 101 57.4
arahy.Tifrunner.gnm1.ann1.P7SNS1 Arachis hypogaea HOM05D003429 ORTHO05D003873 9.3e-19 97.4 101 57.4
MSTRG.20488 Avicennia marina HOM05D003429 ORTHO05D003873 9.3e-19 97.4 100 58.0
QL04p022427 Quercus lobata HOM05D003429 ORTHO05D003873 9.3e-19 97.4 99 56.6
Aqoxy5G00851 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 1.2e-18 97.1 89 60.7
TAR629G1055 Trochodendron aralioides HOM05D003429 ORTHO05D003873 1.2e-18 97.1 100 55.0
AL6G16070 Arabidopsis lyrata HOM05D003429 ORTHO05D003873 1.6e-18 96.7 113 52.2
MELO3C011384.2 Cucumis melo HOM05D003429 ORTHO05D003873 1.6e-18 96.7 114 53.5
CsaV3_6G035760 Cucumis sativus L. HOM05D003429 ORTHO05D003873 1.6e-18 96.7 114 53.5
Glyma.06G003000 Glycine max HOM05D003429 ORTHO05D003873 2.1e-18 96.3 101 56.4
Medtr3g118040 Medicago truncatula HOM05D003429 ORTHO05D003873 2.1e-18 96.3 101 55.4
TPR.G13799 Trifolium pratense HOM05D003429 ORTHO05D003873 2.1e-18 96.3 89 55.1
Carub.0006s0499 Capsella rubella HOM05D003429 ORTHO05D003873 2.7e-18 95.9 113 51.3
Medtr1g051125 Medicago truncatula HOM05D003429 ORTHO05D003873 2.7e-18 95.9 89 53.9
Thecc.10G129100 Theobroma cacao HOM05D003429 ORTHO05D003873 2.7e-18 95.9 100 57.0
GSVIVG01025856001 Vitis vinifera HOM05D003429 ORTHO05D003873 2.7e-18 95.9 101 53.5
Thhalv10012516m.g Eutrema salsugineum HOM05D003429 ORTHO05D003873 3.5e-18 95.5 113 52.2
Gohir.A10G192300 Gossypium hirsutum HOM05D003429 ORTHO05D003873 3.5e-18 95.5 100 54.0
Oeu013041.2 Olea europaea HOM05D003429 ORTHO05D003873 3.5e-18 95.5 100 55.0
RcHm_v2.0_Chr1g0329811 Rosa chinensis HOM05D003429 ORTHO05D003873 3.5e-18 95.5 100 56.0
AT5G06120 Arabidopsis thaliana HOM05D003429 ORTHO05D003873 4.6e-18 95.1 113 51.3
BcaB05g21683 Brassica carinata HOM05D003429 ORTHO05D003873 4.6e-18 95.1 114 50.0
C02p02580 Brassica napus HOM05D003429 ORTHO05D003873 4.6e-18 95.1 114 50.0
BolC2t06224H Brassica oleracea HOM05D003429 ORTHO05D003873 4.6e-18 95.1 114 50.0
MD07G1118000 Malus domestica HOM05D003429 ORTHO05D003873 4.6e-18 95.1 130 46.2
Sc09g0004760 Simmondsia chinensis HOM05D003429 ORTHO05D003873 4.6e-18 95.1 100 57.0
Duzib128G2024 Durio zibethinus HOM05D003429 ORTHO05D003873 6.0e-18 94.7 100 56.0
Sp6g36790 Schrenkiella parvula HOM05D003429 ORTHO05D003873 6.0e-18 94.7 113 50.4
TPR.G38508 Trifolium pratense HOM05D003429 ORTHO05D003873 6.0e-18 94.7 101 54.5
CANSAT56G3732 Cannabis sativa HOM05D003429 ORTHO05D003873 7.9e-18 94.4 99 55.6
Ciclev10000149m.g Citrus clementina HOM05D003429 ORTHO05D003873 7.9e-18 94.4 100 56.0
Gohir.D10G200200 Gossypium hirsutum HOM05D003429 ORTHO05D003873 7.9e-18 94.4 100 53.0
Gorai.011G224400 Gossypium raimondii HOM05D003429 ORTHO05D003873 7.9e-18 94.4 100 53.0
Manes.04G153600 Manihot esculenta HOM05D003429 ORTHO05D003873 7.9e-18 94.4 100 55.0
SalBow5G1634 Salvia bowleyana HOM05D003429 ORTHO05D003873 7.9e-18 94.4 100 55.0
Lsat_1_v5_gn_1_118001 Lactuca sativa HOM05D003429 ORTHO05D003873 1.0e-17 94.0 89 59.6
BraA02t04869Z Brassica rapa HOM05D003429 ORTHO05D003873 1.3e-17 93.6 114 49.1
Haze_02954 Corylus avellana HOM05D003429 ORTHO05D003873 1.3e-17 93.6 125 49.6
Sed0026988 Sechium edule HOM05D003429 ORTHO05D003873 1.3e-17 93.6 100 57.0
unitig_22.g5335 Utricularia gibba HOM05D003429 ORTHO05D003873 1.3e-17 93.6 100 54.0
VMungo1309G0597 Vigna mungo HOM05D003429 ORTHO05D003873 1.3e-17 93.6 101 54.5
Ca_14865_v3 Cicer arietinum L. HOM05D003429 ORTHO05D003873 1.8e-17 93.2 89 52.8
Eucgr.G03181 Eucalyptus grandis HOM05D003429 ORTHO05D003873 1.8e-17 93.2 100 55.0
Phvul.009G118700 Phaseolus vulgaris HOM05D003429 ORTHO05D003873 1.8e-17 93.2 100 53.0
THA.LOC104816588 Tarenaya hassleriana HOM05D003429 ORTHO05D003873 1.8e-17 93.2 113 49.6
EL10Ac4g08832 Beta vulgaris HOM05D003429 ORTHO05D003873 2.3e-17 92.8 89 59.6
HanXRQChr16g0510451 Helianthus annuus HOM05D003429 ORTHO05D003873 2.3e-17 92.8 100 55.0
Hund06843 Selenicereus undatus HOM05D003429 ORTHO05D003873 3.0e-17 92.4 100 53.0
FvH4_7g04530 Fragaria vesca HOM05D003429 ORTHO05D003873 3.9e-17 92.0 101 54.5
FAN03G0932 Fragaria x ananassa HOM05D003429 ORTHO05D003873 3.9e-17 92.0 101 54.5
FAN06G0150 Fragaria x ananassa HOM05D003429 ORTHO05D003873 3.9e-17 92.0 101 54.5
FAN06G3547 Fragaria x ananassa HOM05D003429 ORTHO05D003873 3.9e-17 92.0 101 54.5
FAN10G0722 Fragaria x ananassa HOM05D003429 ORTHO05D003873 3.9e-17 92.0 101 54.5
Manes.11G010000 Manihot esculenta HOM05D003429 ORTHO05D003873 3.9e-17 92.0 100 53.0
SGA_v2.0_scaffold164G38141 Striga asiatica HOM05D003429 ORTHO05D003873 5.1e-17 91.7 89 56.2
BcaC06g32321 Brassica carinata HOM05D003429 ORTHO05D003873 6.7e-17 91.3 113 48.7
C09p70720 Brassica napus HOM05D003429 ORTHO05D003873 6.7e-17 91.3 113 48.7
BolC9t59828H Brassica oleracea HOM05D003429 ORTHO05D003873 6.7e-17 91.3 113 48.7
FAN01G2134 Fragaria x ananassa HOM05D003429 ORTHO05D003873 6.7e-17 91.3 101 54.5
QL07p014239 Quercus lobata HOM05D003429 ORTHO05D003873 6.7e-17 91.3 89 56.2
AUR62035521 Chenopodium quinoa HOM05D003429 ORTHO05D003873 8.7e-17 90.9 100 55.0
Cc00_g07020 Coffea canephora HOM05D003429 ORTHO05D003873 8.7e-17 90.9 89 56.2
Duzib114G0344 Durio zibethinus HOM05D003429 ORTHO05D003873 8.7e-17 90.9 99 54.5
PSO339G2530 Papaver somniferum HOM05D003429 ORTHO05D003873 1.1e-16 90.5 89 53.9
PSO384G1706 Papaver somniferum HOM05D003429 ORTHO05D003873 1.1e-16 90.5 89 53.9
THA.LOC104826824 Tarenaya hassleriana HOM05D003429 ORTHO05D003873 1.1e-16 90.5 113 46.9
TWI63G1019 Tripterygium wilfordii HOM05D003429 ORTHO05D003873 1.1e-16 90.5 100 55.0
A10p30310 Brassica napus HOM05D003429 ORTHO05D003873 1.9e-16 89.7 88 55.7
BraA10t45069Z Brassica rapa HOM05D003429 ORTHO05D003873 1.9e-16 89.7 88 55.7
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 1.9e-16 89.7 88 51.1
AUR62041296 Chenopodium quinoa HOM05D003429 ORTHO05D003873 1.9e-16 89.7 96 55.2
TWI53G2015 Tripterygium wilfordii HOM05D003429 ORTHO05D003873 2.5e-16 89.4 89 55.1
Aa31LG11G7100 Aethionema arabicum HOM05D003429 ORTHO05D003873 3.3e-16 89.0 60 73.3
Os03g0616700 Oryza sativa ssp. japonica HOM05D003429 ORTHO05D003873 3.3e-16 89.0 89 51.7
ATR0782G154 Amborella trichopoda HOM05D003429 ORTHO05D003873 4.3e-16 88.6 89 51.7
HPP92_028707 Vanilla planifolia HOM05D003429 ORTHO05D003873 7.4e-16 87.8 89 51.7
SHI11319 Sapria himalayana HOM05D003429 ORTHO05D003873 1.3e-15 87.0 60 73.3
Zm00001eb278500 Zea mays HOM05D003429 ORTHO05D003873 1.6e-15 86.7 105 44.8
VMungo0720G0379 Vigna mungo HOM05D003429 ORTHO05D003873 2.8e-15 85.9 90 54.4
Glyma.10G104900 Glycine max HOM05D003429 ORTHO05D003873 3.7e-15 85.5 89 52.8
DCAR_022673 Daucus carota HOM05D003429 ORTHO05D003873 6.3e-15 84.7 83 59.0
Phvul.007G243600 Phaseolus vulgaris HOM05D003429 ORTHO05D003873 3.1e-14 82.4 90 47.8
SMO367G0627 Selaginella moellendorffii HOM05D003429 ORTHO05D003873 5.3e-14 81.6 88 45.5
Lalb_Chr02g0156721 Lupinus albus HOM05D003429 ORTHO05D003873 9.0e-14 80.9 89 49.4
Sc13g0000830 Simmondsia chinensis HOM05D003429 ORTHO05D003873 5.9e-13 78.2 97 45.4
DCAR_013522 Daucus carota HOM05D003429 ORTHO05D003873 1.3e-12 77.0 84 52.4
Hund24514 Selenicereus undatus HOM05D003429 ORTHO05D003873 1.1e-11 73.9 85 49.4
CBR_g30950 Chara braunii HOM05D003429 ORTHO05D003873 5.5e-11 71.6 89 42.7
AUR62018433 Chenopodium quinoa HOM05D003429 ORTHO05D003873 7.2e-11 71.2 112 37.5
Pp3c5_25430 Physcomitrium patens HOM05D003429 ORTHO05D003873 7.2e-11 71.2 88 40.9
Mapoly0017s0001 Marchantia polymorpha HOM05D003429 ORTHO05D003873 9.4e-11 70.9 94 39.4
Pp3c5_25610 Physcomitrium patens HOM05D003429 ORTHO05D003873 9.4e-11 70.9 88 40.9
AUR62021000 Chenopodium quinoa HOM05D003429 ORTHO05D003873 3.0e-09 65.9 80 42.5
MapolyY_B0019 Marchantia polymorpha HOM05D003429 ORTHO05D003873 3.9e-09 65.5 105 37.1
EL10Ac3g07341 Beta vulgaris HOM05D003429 ORTHO05D003873 2.2e-07 59.7 82 40.2
Rhsim09G0101900 Rhododendron simsii HOM05D003429 ORTHO05D003873 3.7e-07 58.9 64 57.8
Psat6g086560 Pisum sativum HOM05D003429 ORTHO05D003873 1.1e-06 57.4 59 49.2
HPP92_028456 Vanilla planifolia HOM05D003429 ORTHO05D003873 2.4e-06 56.2 65 44.6


User provided reference genes

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