Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005582 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 4.3e-37 157.5 83 100.0
CSS0024046 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 9.7e-37 156.4 83 98.8
CSS0047418 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 9.7e-37 156.4 83 98.8
CSS0018288 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 3.7e-36 154.5 83 97.6
CSS0024402 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 3.7e-36 154.5 83 97.6
Actinidia26509 Actinidia chinensis HOM05D000045 ORTHO05D000611 2.6e-21 105.1 68 79.4
Dinv22745 Davidia involucrata HOM05D000045 ORTHO05D000611 5.7e-21 104.0 67 82.1
QL10p050105 Quercus lobata HOM05D000045 ORTHO05D000611 9.7e-21 103.2 63 81.0
Dinv44181 Davidia involucrata HOM05D000951 ORTHO05D000611 1.3e-20 102.8 67 80.6
QL01p055428 Quercus lobata HOM05D000045 ORTHO05D000611 1.7e-20 102.4 74 73.0
CSS0002913 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 2.2e-20 102.1 67 80.6
CiPaw.01G098600 Carya illinoinensis HOM05D000045 ORTHO05D000611 2.8e-20 101.7 60 86.7
Rhsim09G0025400 Rhododendron simsii HOM05D000045 ORTHO05D000611 2.8e-20 101.7 60 86.7
Rhsim09G0025600 Rhododendron simsii HOM05D000045 ORTHO05D000611 2.8e-20 101.7 60 86.7
Cfa015175 Carpinus fangiana HOM05D000045 ORTHO05D000611 3.7e-20 101.3 69 76.8
Rhsim02G0081200 Rhododendron simsii HOM05D000045 ORTHO05D000611 3.7e-20 101.3 67 74.6
vmacro00647 Vaccinium macrocarpon HOM05D000045 ORTHO05D000611 3.7e-20 101.3 60 85.0
VMungo1080G1719 Vigna mungo HOM05D000045 ORTHO05D000611 1.1e-19 99.8 60 83.3
Lj6C18G7 Lonicera japonica HOM05D000045 ORTHO05D000611 1.4e-19 99.4 67 77.6
QL01p055274 Quercus lobata HOM05D000045 ORTHO05D000611 1.4e-19 99.4 75 70.7
Manes.02G080200 Manihot esculenta HOM05D000045 ORTHO05D000611 1.8e-19 99.0 60 85.0
RcHm_v2.0_Chr4g0406521 Rosa chinensis HOM05D000045 ORTHO05D000611 1.8e-19 99.0 60 81.7
EL10Ac3g05972 Beta vulgaris HOM05D000045 ORTHO05D000611 3.1e-19 98.2 67 76.1
Duzib175G0006 Durio zibethinus HOM05D000045 ORTHO05D000611 3.1e-19 98.2 60 83.3
GSVIVG01010788001 Vitis vinifera HOM05D000045 ORTHO05D000611 3.1e-19 98.2 67 76.1
MSTRG.12915 Avicennia marina HOM05D000045 ORTHO05D000611 4.1e-19 97.8 66 74.2
Oeu061600.1 Olea europaea HOM05D000045 ORTHO05D000611 4.1e-19 97.8 67 76.1
Potri.007G129500 Populus trichocarpa HOM05D000045 ORTHO05D000611 4.1e-19 97.8 60 81.7
FvH4_4g10891 Fragaria vesca HOM05D000045 ORTHO05D000611 5.3e-19 97.4 60 80.0
Gohir.A02G093800 Gossypium hirsutum HOM05D000045 ORTHO05D000611 5.3e-19 97.4 60 83.3
Gohir.D02G111700 Gossypium hirsutum HOM05D000045 ORTHO05D000611 5.3e-19 97.4 60 83.3
AUR62023864 Chenopodium quinoa HOM05D000045 ORTHO05D000611 7.0e-19 97.1 67 77.6
Manes.01G122100 Manihot esculenta HOM05D000045 ORTHO05D000611 7.0e-19 97.1 66 75.8
Peaxi162Scf00180g01013 Petunia axillaris HOM05D000045 ORTHO05D000611 9.1e-19 96.7 67 74.6
Cc07_g21260 Coffea canephora HOM05D000045 ORTHO05D000611 1.2e-18 96.3 66 74.2
Duzib151G0989 Durio zibethinus HOM05D000045 ORTHO05D000611 1.2e-18 96.3 59 83.1
MD13G1272500 Malus domestica HOM05D000045 ORTHO05D000611 1.2e-18 96.3 60 80.0
Phvul.005G153200 Phaseolus vulgaris HOM05D000045 ORTHO05D000611 1.2e-18 96.3 60 80.0
Prupe.1G196400 Prunus persica HOM05D000045 ORTHO05D000611 1.2e-18 96.3 60 80.0
CANSAT78G0326 Cannabis sativa HOM05D000045 ORTHO05D000611 1.6e-18 95.9 60 80.0
ECA248G2697 Erigeron canadensis HOM05D000045 ORTHO05D000611 1.6e-18 95.9 66 74.2
SGA_v2.0_scaffold9G04927 Striga asiatica HOM05D000045 ORTHO05D000611 1.6e-18 95.9 66 74.2
Thecc.04G177400 Theobroma cacao HOM05D000045 ORTHO05D000611 1.6e-18 95.9 60 81.7
MD04G1042200 Malus domestica HOM05D000045 ORTHO05D000611 2.0e-18 95.5 59 81.4
Actinidia34597 Actinidia chinensis HOM05D000045 ORTHO05D000611 2.7e-18 95.1 58 82.8
Glyma.15G029900 Glycine max HOM05D000045 ORTHO05D000611 3.5e-18 94.7 60 80.0
HanXRQChr01g0024051 Helianthus annuus HOM05D000045 ORTHO05D000611 3.5e-18 94.7 66 72.7
Lalb_Chr14g0372481 Lupinus albus HOM05D000045 ORTHO05D000611 4.5e-18 94.4 68 70.6
Solyc06g073200.4 Solanum lycopersicum HOM05D000045 ORTHO05D000611 4.5e-18 94.4 67 71.6
Sopen06g029570 Solanum pennellii HOM05D000045 ORTHO05D000611 4.5e-18 94.4 67 71.6
TWI15G0966 Tripterygium wilfordii HOM05D000045 ORTHO05D000611 4.5e-18 94.4 60 80.0
Migut.H01929 Erythranthe guttata HOM05D000045 ORTHO05D000611 5.9e-18 94.0 67 70.1
COL.COLO4_16173 Corchorus olitorius HOM05D000045 ORTHO05D000611 1.0e-17 93.2 60 80.0
HanXRQChr09g0257921 Helianthus annuus HOM05D000045 ORTHO05D000611 1.0e-17 93.2 66 74.2
Lj3g0027245 Lotus japonicus HOM05D000045 ORTHO05D000611 1.0e-17 93.2 61 75.4
Phvul.011G054000 Phaseolus vulgaris HOM05D000045 ORTHO05D000611 1.3e-17 92.8 60 76.7
Sed0016717 Sechium edule HOM05D000045 ORTHO05D000611 1.3e-17 92.8 60 78.3
Lalb_Chr22g0352111 Lupinus albus HOM05D000045 ORTHO05D000611 1.7e-17 92.4 60 75.0
Hund11928 Selenicereus undatus HOM05D000045 ORTHO05D000611 1.7e-17 92.4 66 71.2
Sc25g0002490 Simmondsia chinensis HOM05D000045 ORTHO05D000611 1.7e-17 92.4 67 73.1
Cpa.g.sc195.42 Carica papaya HOM05D000045 ORTHO05D000611 2.2e-17 92.0 59 78.0
CiPaw.02G054200 Carya illinoinensis HOM05D000045 ORTHO05D000611 2.2e-17 92.0 60 80.0
MELO3C032619.2 Cucumis melo HOM05D000045 ORTHO05D000611 3.8e-17 91.3 60 76.7
CsaV3_4G003760 Cucumis sativus L. HOM05D000045 ORTHO05D000611 3.8e-17 91.3 60 76.7
Lalb_Chr03g0026091 Lupinus albus HOM05D000045 ORTHO05D000611 3.8e-17 91.3 60 75.0
Sabra17G0017700 Salix brachista HOM05D000045 ORTHO05D000611 3.8e-17 91.3 59 79.7
ClCG07G016630 Citrullus lanatus HOM05D000045 ORTHO05D000611 5.0e-17 90.9 60 76.7
Lj2g0026742 Lotus japonicus HOM05D000045 ORTHO05D000611 5.0e-17 90.9 60 73.3
Ah.07g202110 Amaranthus hybridus HOM05D000045 ORTHO05D000611 6.5e-17 90.5 67 71.6
Potri.017G029100 Populus trichocarpa HOM05D000045 ORTHO05D000611 6.5e-17 90.5 60 78.3
Sabra07G0105400 Salix brachista HOM05D003336 ORTHO05D000611 8.5e-17 90.1 60 76.7
TWI63G1472 Tripterygium wilfordii HOM05D000045 ORTHO05D000611 1.1e-16 89.7 60 75.0
PGR083G1974 Punica granatum HOM05D000045 ORTHO05D000611 1.9e-16 89.0 59 74.6
arahy.Tifrunner.gnm1.ann1.NRKY30 Arachis hypogaea HOM05D000045 ORTHO05D000611 7.2e-16 87.0 59 71.2
arahy.Tifrunner.gnm1.ann1.VV1Q05 Arachis hypogaea HOM05D000045 ORTHO05D000611 7.2e-16 87.0 59 71.2
Ca_20791_v3 Cicer arietinum L. HOM05D000045 ORTHO05D000611 9.4e-16 86.7 60 73.3
AUR62002320 Chenopodium quinoa HOM05D000045 ORTHO05D000611 1.2e-15 86.3 52 82.7
Psat7g209880 Pisum sativum HOM05D000045 ORTHO05D000611 1.2e-15 86.3 62 71.0
arahy.Tifrunner.gnm1.ann1.6XY8VG Arachis hypogaea HOM05D000045 ORTHO05D000611 1.6e-15 85.9 60 73.3
arahy.Tifrunner.gnm1.ann1.TJH45E Arachis hypogaea HOM05D000045 ORTHO05D000611 1.6e-15 85.9 60 73.3
Glyma.12G052000 Glycine max HOM05D000045 ORTHO05D000611 1.6e-15 85.9 59 72.9
Nitab4.5_0011171g0010 Nicotiana tabacum HOM05D000045 ORTHO05D000611 1.6e-15 85.9 69 68.1
arahy.Tifrunner.gnm1.ann1.VJP601 Arachis hypogaea HOM05D000045 ORTHO05D000611 2.1e-15 85.5 60 73.3
Carub.0005s2620 Capsella rubella HOM05D000045 ORTHO05D000611 2.7e-15 85.1 68 63.2
Gohir.A02G012400 Gossypium hirsutum HOM05D000045 ORTHO05D000611 2.7e-15 85.1 64 65.6
arahy.Tifrunner.gnm1.ann1.YIT1R5 Arachis hypogaea HOM05D000045 ORTHO05D000611 3.6e-15 84.7 61 67.2
A07p24660 Brassica napus HOM05D000045 ORTHO05D000611 3.6e-15 84.7 67 61.2
BraA07t30111Z Brassica rapa HOM05D000045 ORTHO05D000611 3.6e-15 84.7 67 61.2
BcaC08g44991 Brassica carinata HOM05D000045 ORTHO05D000611 6.1e-15 84.0 68 58.8
CAN.G65.165 Capsicum annuum HOM05D000004 ORTHO05D000611 6.1e-15 84.0 56 76.8
Nitab4.5_0004983g0030 Nicotiana tabacum HOM05D000045 ORTHO05D000611 6.1e-15 84.0 56 76.8
Aa31LG10G13790 Aethionema arabicum HOM05D000045 ORTHO05D000611 8.0e-15 83.6 67 61.2
AL5G41380 Arabidopsis lyrata HOM05D000045 ORTHO05D000611 8.0e-15 83.6 67 62.7
AT3G59470 Arabidopsis thaliana HOM05D000045 ORTHO05D000611 8.0e-15 83.6 67 62.7
C06p26200 Brassica napus HOM05D000045 ORTHO05D000611 8.0e-15 83.6 67 59.7
BolC6t37783H Brassica oleracea HOM05D000045 ORTHO05D000611 8.0e-15 83.6 67 59.7
CARHR169850 Cardamine hirsuta HOM05D000045 ORTHO05D000611 8.0e-15 83.6 67 62.7
Medtr4g067290 Medicago truncatula HOM05D000045 ORTHO05D000611 8.0e-15 83.6 62 67.7
BraA09t40609Z Brassica rapa HOM05D000045 ORTHO05D000611 1.0e-14 83.2 67 61.2
Glyma.11G127400 Glycine max HOM05D000045 ORTHO05D000611 1.0e-14 83.2 59 71.2
Sp5g03690 Schrenkiella parvula HOM05D000045 ORTHO05D000611 1.0e-14 83.2 67 61.2
BcaB02g07464 Brassica carinata HOM05D000045 ORTHO05D000611 1.4e-14 82.8 67 59.7
TPR.G34188 Trifolium pratense HOM05D000045 ORTHO05D000611 1.4e-14 82.8 62 67.7
A09p51730 Brassica napus HOM05D000045 ORTHO05D000611 1.8e-14 82.4 59 67.8
SHI23520 Sapria himalayana HOM05D000045 ORTHO05D000611 1.8e-14 82.4 60 66.7
arahy.Tifrunner.gnm1.ann1.SFNX64 Arachis hypogaea HOM05D000045 ORTHO05D000611 2.3e-14 82.0 59 66.1
BcaC07g40474 Brassica carinata HOM05D000045 ORTHO05D000611 2.3e-14 82.0 67 59.7
BcaNung05946 Brassica carinata HOM05D000045 ORTHO05D000611 2.3e-14 82.0 67 59.7
C08p34460 Brassica napus HOM05D000045 ORTHO05D000611 2.3e-14 82.0 67 59.7
BolC8t51047H Brassica oleracea HOM05D000045 ORTHO05D000611 2.3e-14 82.0 67 59.7
Nn1g09610 Nelumbo nucifera HOM05D000045 ORTHO05D000611 3.0e-14 81.6 67 59.7
Ca_01256_v3 Cicer arietinum L. HOM05D000045 ORTHO05D000611 4.0e-14 81.3 57 68.4
Duzib268G1533 Durio zibethinus HOM05D000045 ORTHO05D000611 5.2e-14 80.9 49 83.7
Thhalv10006173m.g Eutrema salsugineum HOM05D000045 ORTHO05D000611 5.2e-14 80.9 67 58.2
Gorai.005G016700 Gossypium raimondii HOM05D000045 ORTHO05D000611 5.2e-14 80.9 58 72.4
TAR636G0033 Trochodendron aralioides HOM05D000045 ORTHO05D000611 6.8e-14 80.5 60 63.3
arahy.Tifrunner.gnm1.ann1.ZSYR8D Arachis hypogaea HOM05D000045 ORTHO05D000611 1.2e-13 79.7 59 64.4
Atru.chr4.1231 Acer truncatum HOM05D000045 ORTHO05D000611 1.5e-13 79.3 60 65.0
Gohir.D02G013200 Gossypium hirsutum HOM05D000045 ORTHO05D000611 1.5e-13 79.3 58 70.7
Sed0015975 Sechium edule HOM05D000045 ORTHO05D000611 2.0e-13 79.0 60 65.0
Medtr2g098920 Medicago truncatula HOM05D000045 ORTHO05D000611 2.6e-13 78.6 57 66.7
TPR.G18844 Trifolium pratense HOM05D000045 ORTHO05D000611 6.3e-12 73.9 57 59.6
Oeu020500.1 Olea europaea HOM05D000045 ORTHO05D000611 1.4e-11 72.8 73 56.2
arahy.Tifrunner.gnm1.ann1.R6QTEJ Arachis hypogaea HOM05D000045 ORTHO05D000611 7.0e-11 70.5 59 61.0
Migut.J01148 Erythranthe guttata HOM05D000045 ORTHO05D000611 1.0e-09 66.6 66 57.6
SGA_v2.0_scaffold148G36396 Striga asiatica HOM05D000045 ORTHO05D000611 1.7e-09 65.9 66 59.1
Thecc.05G188100 Theobroma cacao HOM05D000045 ORTHO05D000611 3.8e-09 64.7 65 49.2
Prupe.6G364200 Prunus persica HOM05D000045 ORTHO05D000611 8.5e-09 63.5 59 49.2
SalBow6G6829 Salvia bowleyana HOM05D000045 ORTHO05D000611 8.5e-09 63.5 89 48.3
MSTRG.19576 Avicennia marina HOM05D000045 ORTHO05D000611 1.9e-08 62.4 67 53.7
RcHm_v2.0_Chr3g0447511 Rosa chinensis HOM05D000045 ORTHO05D000611 1.9e-08 62.4 66 43.9
Prupe.6G364300 Prunus persica HOM05D000045 ORTHO05D000611 2.1e-07 58.9 66 40.9
CiPaw.07G083500 Carya illinoinensis HOM05D000045 ORTHO05D000611 2.7e-07 58.5 57 43.9
MD04G1247800 Malus domestica HOM05D000045 ORTHO05D000611 2.7e-07 58.5 66 42.4
MD12G1262700 Malus domestica HOM05D000045 ORTHO05D000611 4.7e-07 57.8 66 40.9
Nn1g09616 Nelumbo nucifera HOM05D000045 ORTHO05D000611 4.7e-07 57.8 74 40.5
FvH4_6g00151 Fragaria vesca HOM05D000045 ORTHO05D000611 6.1e-07 57.4 66 39.4
Rhsim09G0026800 Rhododendron simsii HOM05D000045 ORTHO05D000611 1.0e-06 56.6 56 46.4
RhsimUnG0195800 Rhododendron simsii HOM05D000045 ORTHO05D000611 1.0e-06 56.6 56 46.4
TAR633G1868 Trochodendron aralioides HOM05D000045 ORTHO05D000611 1.0e-06 56.6 82 43.9
Hma1.2p1_4193F.1_g338430 Hydrangea macrophylla HOM05D000045 ORTHO05D000611 1.4e-06 56.2 63 42.9
Prupe.8G188300 Prunus persica HOM05D000045 ORTHO05D000611 1.4e-06 56.2 54 51.9
TAR362G0617 Trochodendron aralioides HOM05D000045 ORTHO05D000611 1.4e-06 56.2 65 47.7
MD05G1155500 Malus domestica HOM05D000045 ORTHO05D000611 1.8e-06 55.8 54 51.9
MD10G1149900 Malus domestica HOM05D000045 ORTHO05D000611 1.8e-06 55.8 65 46.2
Hma1.2p1_1539F.1_g289640 Hydrangea macrophylla HOM05D000045 ORTHO05D000611 2.3e-06 55.5 63 41.3
GSVIVG01001896001 Vitis vinifera HOM05D000045 ORTHO05D000611 2.3e-06 55.5 55 50.9
Nn7g36622 Nelumbo nucifera HOM05D000045 ORTHO05D000611 3.0e-06 55.1 75 41.3
Prupe.1G195800 Prunus persica HOM05D000045 ORTHO05D000611 3.0e-06 55.1 63 44.4
QL01p047769 Quercus lobata HOM05D000045 ORTHO05D000611 3.0e-06 55.1 76 36.8
TAR636G2452 Trochodendron aralioides HOM05D000045 ORTHO05D000611 3.0e-06 55.1 62 45.2
Cpa.g.sc9.289 Carica papaya HOM05D000045 ORTHO05D000611 4.0e-06 54.7 63 42.9
RcHm_v2.0_Chr3g0447521 Rosa chinensis HOM05D000045 ORTHO05D000611 4.0e-06 54.7 61 39.3
GSVIVG01010762001 Vitis vinifera HOM05D000045 ORTHO05D000611 4.0e-06 54.7 69 43.5
CiPaw.01G099400 Carya illinoinensis HOM05D000045 ORTHO05D000611 5.2e-06 54.3 63 41.3
Potri.007G128900 Populus trichocarpa HOM05D000045 ORTHO05D000611 5.2e-06 54.3 55 49.1
COL.COLO4_07043 Corchorus olitorius HOM05D000045 ORTHO05D000611 6.8e-06 53.9 55 49.1
MD05G1156200 Malus domestica HOM05D000045 ORTHO05D000611 6.8e-06 53.9 54 50.0
FAN15G1153 Fragaria x ananassa HOM05D000045 ORTHO05D000611 8.8e-06 53.5 60 46.7
Lj3C186T3 Lonicera japonica HOM05D000045 ORTHO05D000611 8.8e-06 53.5 63 39.7
Potri.008G076800 Populus trichocarpa HOM05D000045 ORTHO05D000611 8.8e-06 53.5 54 46.3
Thecc.01G209100 Theobroma cacao HOM05D000045 ORTHO05D000611 8.8e-06 53.5 54 50.0


User provided reference genes

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