Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 7.7e-132 473.8 234 100.0
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 4.1e-93 345.1 256 70.3
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 7.1e-93 344.4 257 69.6
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 2.3e-91 339.3 259 68.3
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 9.6e-90 334.0 259 68.0
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 2.5e-82 309.3 251 64.1
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 1.8e-80 303.1 246 63.0
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 2.4e-80 302.8 237 65.0
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 2.4e-80 302.8 201 72.1
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 1.5e-79 300.1 258 63.2
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 2.0e-79 299.7 223 66.4
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 3.4e-79 298.9 228 65.8
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 5.8e-79 298.1 249 63.1
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 9.9e-79 297.4 238 62.6
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 9.9e-79 297.4 249 62.2
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 2.2e-78 296.2 264 60.6
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.2e-78 296.2 257 59.9
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 2.9e-78 295.8 245 62.9
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 6.4e-78 294.7 244 62.3
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 6.4e-78 294.7 238 63.9
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 1.1e-77 293.9 247 61.5
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 1.4e-77 293.5 250 62.4
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 1.9e-77 293.1 260 60.4
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 1.9e-77 293.1 264 61.7
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 3.2e-77 292.4 238 62.2
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 5.4e-77 291.6 240 61.2
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 5.4e-77 291.6 239 61.9
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 9.3e-77 290.8 248 62.5
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 1.2e-76 290.4 252 61.5
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 1.2e-76 290.4 241 62.7
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 1.6e-76 290.0 241 63.1
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.1e-76 289.7 248 61.7
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 2.1e-76 289.7 239 61.5
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 2.1e-76 289.7 241 61.8
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 2.1e-76 289.7 262 61.5
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.1e-76 289.7 251 61.4
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 2.7e-76 289.3 264 59.5
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.7e-76 289.3 263 59.7
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 2.7e-76 289.3 239 61.1
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 4.6e-76 288.5 229 64.2
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 4.6e-76 288.5 245 60.8
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 6.0e-76 288.1 261 58.6
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 7.9e-76 287.7 254 61.0
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 7.9e-76 287.7 249 59.8
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 1.3e-75 287.0 263 56.7
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 1.3e-75 287.0 208 67.8
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.8e-75 286.6 259 61.4
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 1.8e-75 286.6 246 60.2
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 3.0e-75 285.8 255 58.8
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 3.0e-75 285.8 256 60.2
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 3.9e-75 285.4 258 61.2
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 5.1e-75 285.0 263 58.9
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 6.7e-75 284.6 262 59.5
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 8.7e-75 284.3 184 71.7
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 1.5e-74 283.5 259 61.0
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.5e-74 283.5 259 61.0
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 2.5e-74 282.7 239 60.7
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 4.3e-74 282.0 266 56.4
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 4.3e-74 282.0 254 59.1
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 5.6e-74 281.6 266 58.6
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 1.3e-73 280.4 261 57.1
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 2.1e-73 279.6 238 60.5
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 2.8e-73 279.3 241 61.4
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 3.6e-73 278.9 256 56.6
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 4.8e-73 278.5 184 70.1
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 8.1e-73 277.7 213 62.4
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 1.8e-72 276.6 206 63.6
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 2.4e-72 276.2 250 60.0
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 2.4e-72 276.2 257 59.1
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 3.1e-72 275.8 252 59.5
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 3.1e-72 275.8 197 66.0
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 4.0e-72 275.4 232 61.6
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 4.0e-72 275.4 244 58.2
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 5.3e-72 275.0 266 53.8
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 9.0e-72 274.2 231 61.0
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 1.5e-71 273.5 252 57.5
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 1.5e-71 273.5 266 53.0
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 2.0e-71 273.1 193 66.8
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 2.6e-71 272.7 243 57.6
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 4.5e-71 271.9 241 60.2
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 4.5e-71 271.9 188 68.6
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 5.8e-71 271.6 263 59.7
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 7.6e-71 271.2 236 57.6
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 1.7e-70 270.0 244 57.8
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 2.2e-70 269.6 259 53.7
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 3.8e-70 268.9 245 55.9
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 6.4e-70 268.1 255 54.9
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 6.4e-70 268.1 255 54.9
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 8.4e-70 267.7 222 61.3
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 1.4e-69 266.9 243 55.6
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 5.5e-69 265.0 250 55.6
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 7.1e-69 264.6 202 62.4
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 1.6e-68 263.5 197 64.5
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 2.1e-68 263.1 234 61.5
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 2.7e-68 262.7 187 65.8
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 3.5e-68 262.3 252 54.0
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 3.5e-68 262.3 254 55.9
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 6.0e-68 261.5 252 54.0
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 1.0e-67 260.8 191 67.5
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 3.0e-67 259.2 253 56.1
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 1.9e-66 256.5 247 58.3
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.5e-66 256.1 229 61.1
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 5.6e-66 255.0 192 64.6
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 4.8e-65 251.9 162 75.9
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 1.8e-64 250.0 192 62.5
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 2.4e-64 249.6 201 62.7
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 5.3e-64 248.4 254 53.5
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 1.3e-62 243.8 215 60.9
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.7e-62 243.4 160 73.8
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 1.9e-61 240.0 246 54.9
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 4.6e-60 235.3 167 66.5
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 7.9e-60 234.6 253 50.2
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 5.1e-59 231.9 259 54.1
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 6.7e-59 231.5 161 68.9
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 6.7e-59 231.5 201 59.7
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 8.2e-57 224.6 248 52.0
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 4.1e-56 222.2 191 57.1
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 8.5e-54 214.5 218 53.2
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 6.7e-51 204.9 182 49.5
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 1.1e-50 204.1 237 48.9
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 7.9e-44 181.4 102 81.4
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 1.4e-43 180.6 148 62.2
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 8.8e-43 177.9 101 80.2
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 4.4e-42 175.6 145 59.3
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 8.2e-41 171.4 238 41.2
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 3.8e-38 162.5 107 70.1
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 3.8e-38 162.5 110 65.5
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.1e-32 144.4 156 53.8
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.6e-31 139.8 170 46.5
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.1e-28 130.2 100 66.0
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 4.0e-27 125.9 129 53.5
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 1.2e-23 114.4 70 72.9
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 5.0e-22 109.0 70 70.0
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 4.7e-20 102.4 67 76.1
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 5.7e-18 95.5 166 34.9
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 1.6e-15 87.4 199 31.2
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 1.5e-13 80.9 215 28.4
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 2.5e-13 80.1 204 28.4
Nitab4.5_0000848g0140 Nicotiana tabacum HOM05D007024 ORTHO05D008865 3.2e-13 79.7 221 26.7
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 7.2e-13 78.6 101 49.5
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 2.8e-12 76.6 62 64.5
Oeu013340.1 Olea europaea HOM05D004917 ORTHO05D005954 5.2e-11 72.4 87 47.1
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 4.4e-10 69.3 100 40.0
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 2.8e-09 66.6 81 48.1
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 1.4e-08 64.3 211 28.0
PGSC0003DMG400027897 Solanum tuberosum HOM05D007024 ORTHO05D008865 5.4e-08 62.4 145 29.7
GSVIVG01007445001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.7e-06 57.4 49 51.0


User provided reference genes

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