Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 0.0e+00 1349.7 708 100.0
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 0.0e+00 1161.0 702 89.6
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 1.8e-248 862.8 691 69.8
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 4.4e-247 858.2 675 69.3
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 5.8e-247 857.8 587 75.5
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 2.3e-235 819.3 676 66.6
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 3.0e-235 818.9 708 66.5
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 3.4e-231 805.4 686 62.5
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 2.1e-228 796.2 648 64.5
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 6.0e-228 794.7 649 64.9
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 5.2e-224 781.6 679 61.4
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 3.4e-223 778.9 695 59.7
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 2.2e-222 776.2 704 61.2
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 2.9e-222 775.8 685 61.2
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 2.1e-220 769.6 686 60.1
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 2.7e-220 769.2 684 59.2
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 2.0e-215 753.1 643 63.1
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 5.8e-215 751.5 648 62.0
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 8.4e-214 747.7 684 59.9
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 1.4e-213 746.9 678 59.0
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 1.9e-210 736.5 649 61.8
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 9.6e-210 734.2 703 56.5
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 9.6e-210 734.2 647 61.7
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 4.8e-209 731.9 653 61.1
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 4.5e-207 725.3 676 57.7
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 1.3e-206 723.8 649 61.0
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 6.0e-204 714.9 661 58.4
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 1.3e-203 713.8 682 58.2
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 3.9e-203 712.2 681 58.1
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 2.1e-201 706.4 640 61.1
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 3.7e-201 705.7 640 60.6
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 6.2e-201 704.9 701 56.2
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 1.4e-200 703.7 684 54.4
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 3.1e-200 702.6 640 60.8
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 1.5e-199 700.3 645 60.2
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 1.0e-198 697.6 672 57.7
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 1.9e-197 693.3 687 55.2
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 2.5e-197 693.0 650 56.0
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 4.2e-197 692.2 677 56.1
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 4.6e-196 688.7 698 54.0
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 5.1e-195 685.3 646 55.1
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 8.7e-195 684.5 637 57.1
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 4.3e-194 682.2 668 57.0
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 1.4e-192 677.2 646 54.6
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 9.0e-192 674.5 680 55.1
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 9.0e-192 674.5 671 55.6
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 2.2e-190 669.8 673 55.7
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 3.8e-190 669.1 677 53.3
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 6.5e-190 668.3 678 55.5
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 1.4e-189 667.2 701 55.1
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 3.2e-189 666.0 694 55.0
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 4.2e-189 665.6 635 56.7
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 5.5e-189 665.2 680 55.1
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 4.6e-188 662.1 661 53.3
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 7.9e-188 661.4 676 53.0
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 1.0e-187 661.0 678 53.5
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 1.8e-187 660.2 662 55.4
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 2.5e-186 656.4 679 53.0
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 5.7e-186 655.2 645 54.3
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 1.3e-185 654.1 679 53.5
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 6.3e-185 651.7 670 53.3
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 6.3e-185 651.7 644 55.0
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 1.4e-184 650.6 678 52.8
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 7.7e-183 644.8 677 51.7
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 1.4e-181 640.6 677 52.9
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 4.6e-180 635.6 648 53.7
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 6.7e-179 631.7 713 48.8
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 3.1e-176 622.9 682 50.1
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 7.7e-175 618.2 707 50.9
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 1.0e-174 617.8 641 55.2
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 4.2e-173 612.5 680 51.8
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 9.4e-173 611.3 681 50.1
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 6.3e-169 598.6 683 49.3
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 2.4e-168 596.7 662 51.4
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 7.0e-168 595.1 645 49.9
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 5.9e-167 592.0 682 48.2
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 1.1e-165 587.8 697 47.9
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 2.5e-165 586.6 641 52.9
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 5.5e-165 585.5 697 47.8
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 1.1e-162 577.8 705 47.5
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 1.3e-161 574.3 693 48.1
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 1.8e-160 570.5 696 47.7
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 6.5e-158 562.0 717 46.2
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 1.1e-157 561.2 698 46.4
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 2.7e-156 556.6 703 46.8
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 5.7e-154 548.9 648 50.2
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 1.3e-153 547.7 693 47.0
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 1.1e-152 544.7 650 48.5
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 2.2e-145 520.4 480 60.0
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 4.5e-143 512.7 650 47.8
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 5.6e-141 505.8 699 43.9
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 1.3e-137 494.6 645 41.9
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 1.7e-134 484.2 644 42.2
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 3.3e-125 453.4 440 55.0
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 4.6e-111 406.4 392 54.1
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 9.6e-109 398.7 434 53.5
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 1.3e-97 361.7 323 63.8
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 3.0e-94 350.5 443 44.7
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 1.4e-80 305.1 371 46.6
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 1.4e-75 288.5 704 32.5
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 2.0e-74 284.6 615 33.7
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 1.2e-66 258.8 265 54.3
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 1.0e-62 245.7 287 46.3
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 2.3e-62 244.6 287 46.3
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 1.7e-60 238.4 629 30.8
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 2.6e-58 231.1 553 32.4
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 1.1e-56 225.7 220 57.3
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 1.7e-41 175.3 149 55.0
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 3.8e-41 174.1 252 44.0
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 1.9e-40 171.8 202 51.5
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 2.0e-37 161.8 229 43.7
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 1.5e-32 145.6 770 23.1
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 2.5e-32 144.8 224 38.8
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 9.5e-32 142.9 588 24.3
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 7.5e-29 133.3 176 47.7
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 1.1e-27 129.4 128 56.2
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 9.5e-24 116.3 173 42.8
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 6.1e-23 113.6 79 65.8
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 8.0e-23 113.2 146 41.8
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 2.3e-22 111.7 77 66.2
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 5.4e-19 100.5 103 52.4
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 2.7e-18 98.2 67 65.7
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 3.9e-17 94.4 103 51.5
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 8.9e-14 83.2 53 67.9
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 8.9e-14 83.2 53 67.9
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 2.0e-13 82.0 148 37.8
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 7.5e-13 80.1 237 30.0
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 2.2e-12 78.6 64 62.5
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 4.6e-10 70.9 64 59.4
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 6.8e-06 57.0 82 39.0


User provided reference genes

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