Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.6e-266 922.2 466 100.0
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.4e-177 626.7 452 74.1
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.9e-174 616.3 452 73.0
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 4.3e-174 615.1 452 71.9
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 1.6e-173 613.2 452 71.5
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 3.1e-172 609.0 451 72.3
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 4.0e-172 608.6 471 69.4
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 5.2e-172 608.2 452 71.9
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 3.4e-171 605.5 452 70.8
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 4.4e-171 605.1 452 70.8
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 7.6e-171 604.4 452 69.9
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 1.3e-170 603.6 474 67.7
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 2.2e-170 602.8 453 71.1
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 5.4e-169 598.2 453 70.4
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 5.4e-169 598.2 453 70.4
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 5.4e-169 598.2 452 70.8
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 2.7e-168 595.9 452 70.4
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 2.7e-168 595.9 452 69.9
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 4.6e-168 595.1 453 70.0
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 7.8e-168 594.3 452 71.0
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 1.0e-167 594.0 452 69.5
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 1.3e-167 593.6 452 70.1
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 3.0e-167 592.4 452 69.9
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 2.1e-165 586.3 452 68.4
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 2.8e-165 585.9 453 69.1
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 3.6e-165 585.5 453 68.7
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 3.6e-165 585.5 452 69.2
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 3.6e-165 585.5 452 68.8
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 3.6e-165 585.5 452 67.9
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 8.1e-165 584.3 452 68.4
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 1.1e-164 583.9 454 69.4
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 1.1e-164 583.9 453 68.7
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.4e-164 583.6 446 69.7
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 1.4e-164 583.6 452 67.7
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 3.1e-164 582.4 453 68.7
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 8.9e-164 580.9 452 67.9
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 2.6e-163 579.3 452 67.9
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 3.4e-163 578.9 470 66.6
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 3.4e-163 578.9 452 67.3
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 4.4e-163 578.6 453 67.8
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 7.6e-163 577.8 452 68.6
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 1.3e-162 577.0 453 68.4
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 1.7e-162 576.6 452 67.9
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 2.2e-162 576.2 453 69.1
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 4.9e-162 575.1 452 66.8
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 4.9e-162 575.1 452 66.8
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 4.9e-162 575.1 452 67.5
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 4.9e-162 575.1 452 66.6
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 4.9e-162 575.1 452 67.5
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 6.4e-162 574.7 452 67.5
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 8.4e-162 574.3 452 68.8
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 1.9e-161 573.2 464 67.2
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 3.2e-161 572.4 452 67.5
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 4.2e-161 572.0 412 73.1
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 4.2e-161 572.0 452 67.7
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 5.4e-161 571.6 453 67.3
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 5.4e-161 571.6 453 68.2
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 9.3e-161 570.9 454 67.8
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 1.2e-160 570.5 452 67.7
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 2.7e-160 569.3 454 66.5
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 2.7e-160 569.3 452 66.6
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 4.6e-160 568.5 453 68.2
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 6.0e-160 568.2 452 67.0
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 7.8e-160 567.8 452 66.8
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 2.3e-159 566.2 471 65.8
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 3.0e-159 565.8 453 67.8
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 5.1e-159 565.1 453 67.8
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 8.7e-159 564.3 452 65.7
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 8.7e-159 564.3 455 67.0
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 1.5e-158 563.5 452 66.4
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 1.5e-158 563.5 453 67.3
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 1.3e-157 560.5 453 66.7
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 1.3e-157 560.5 454 66.5
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 2.8e-157 559.3 453 64.7
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 8.1e-157 557.8 455 65.9
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 1.5e-155 553.5 455 65.7
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 2.0e-155 553.1 455 65.7
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 3.4e-155 552.4 455 65.9
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 3.4e-155 552.4 455 65.9
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 5.8e-155 551.6 455 65.1
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 5.8e-155 551.6 455 65.7
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 7.6e-155 551.2 454 65.9
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 7.6e-155 551.2 454 65.9
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 1.3e-154 550.4 454 65.9
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 1.7e-154 550.1 451 66.1
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 1.7e-154 550.1 454 65.6
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 1.7e-154 550.1 455 65.3
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 1.7e-154 550.1 453 64.0
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 2.9e-154 549.3 453 65.6
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 3.8e-154 548.9 452 65.9
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 3.8e-154 548.9 598 53.5
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 4.9e-154 548.5 431 67.7
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 4.9e-154 548.5 451 65.9
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 1.4e-153 547.0 455 66.4
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 1.9e-153 546.6 455 65.3
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 1.9e-153 546.6 454 65.0
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 3.2e-153 545.8 451 65.2
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 7.1e-153 544.7 454 65.2
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 1.2e-152 543.9 454 65.2
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 1.2e-152 543.9 450 65.3
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 1.6e-152 543.5 449 65.7
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 4.6e-152 542.0 455 64.6
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 6.0e-152 541.6 503 60.2
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 7.9e-152 541.2 440 65.5
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 1.3e-151 540.4 550 56.7
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 1.3e-151 540.4 453 66.7
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 3.9e-151 538.9 501 60.1
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 1.1e-150 537.3 416 69.0
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 9.9e-147 524.2 469 61.2
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 6.7e-143 511.5 453 60.3
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 1.4e-140 503.8 455 61.8
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 5.8e-139 498.4 410 65.9
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 3.2e-137 492.7 386 69.4
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 3.3e-126 456.1 304 77.3
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 9.7e-126 454.5 358 66.8
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 4.5e-123 445.7 374 66.8
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 6.7e-119 431.8 358 65.6
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 1.3e-106 391.0 402 58.5
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 2.0e-102 377.1 413 50.1
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 2.2e-101 373.6 414 49.0
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 1.4e-100 370.9 337 61.7
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 9.1e-100 368.2 438 47.3
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 2.0e-94 350.5 391 47.6
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 2.5e-89 333.6 275 68.7
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 2.2e-85 320.5 401 45.1
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 7.8e-75 285.4 240 63.8
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 5.2e-71 272.7 306 47.1
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 1.2e-64 251.5 402 38.8
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 1.1e-57 228.4 409 34.5
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 1.2e-54 218.4 244 54.5
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 9.9e-54 215.3 317 45.1
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 1.4e-52 211.5 285 47.0
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 6.6e-50 202.6 197 58.9
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 4.7e-48 196.4 410 34.1
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.4e-36 157.5 122 69.7
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 1.8e-26 124.8 162 50.0
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 1.1e-25 122.1 102 64.7
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 2.5e-25 120.9 104 64.4
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 2.8e-24 117.5 80 70.0
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 1.1e-20 105.5 82 61.0
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 6.0e-19 99.8 115 46.1
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 8.7e-18 95.9 75 62.7
Dinv43063 Davidia involucrata HOM05D000834 ORTHO05D183077 1.8e-10 71.6 58 62.1
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 1.4e-07 62.0 76 48.7
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 1.2e-06 58.9 41 70.7


User provided reference genes

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