Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.4e-67 259.6 138 100.0
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.4e-67 259.6 138 100.0
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 9.5e-21 104.0 122 54.1
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 9.5e-21 104.0 67 85.1
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 1.0e-19 100.5 67 79.1
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.4e-19 100.1 67 83.6
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.4e-19 100.1 67 85.1
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 6.8e-19 97.8 66 83.3
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 8.9e-19 97.4 67 82.1
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.2e-18 97.1 71 73.2
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 1.5e-18 96.7 75 72.0
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 2.6e-18 95.9 83 66.3
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 3.4e-18 95.5 67 82.1
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 4.4e-18 95.1 64 82.8
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 4.4e-18 95.1 66 77.3
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 4.4e-18 95.1 67 80.6
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 4.4e-18 95.1 69 75.4
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 7.5e-18 94.4 70 74.3
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 9.8e-18 94.0 65 78.5
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 9.8e-18 94.0 68 77.9
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 3.7e-17 92.0 64 79.7
Nn4g23635 Nelumbo nucifera HOM05D001568 ORTHO05D004404 3.7e-17 92.0 67 77.6
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.9e-17 91.7 83 67.5
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 8.3e-17 90.9 68 79.4
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.1e-16 90.5 67 77.6
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 1.4e-16 90.1 66 74.2
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 3.2e-16 89.0 64 76.6
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 4.1e-16 88.6 65 75.4
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 4.1e-16 88.6 65 73.8
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 4.1e-16 88.6 65 75.4
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 9.2e-16 87.4 64 76.6
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 9.2e-16 87.4 60 81.7
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 1.2e-15 87.0 70 75.7
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.2e-15 87.0 64 75.0
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 1.6e-15 86.7 64 75.0
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 3.5e-15 85.5 57 84.2
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 4.6e-15 85.1 73 68.5
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 4.6e-15 85.1 64 73.4
DCAR_010979 Daucus carota HOM05D001568 ORTHO05D004404 7.8e-15 84.3 73 69.9
DCAR_010982 Daucus carota HOM05D001568 ORTHO05D004404 7.8e-15 84.3 73 69.9
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 7.8e-15 84.3 67 68.7
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 7.8e-15 84.3 67 68.7
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 2.3e-14 82.8 67 68.7
Gohir.A07G073000 Gossypium hirsutum HOM05D001568 ORTHO05D004404 5.0e-14 81.6 74 63.5
Sed0003724 Sechium edule HOM05D001568 ORTHO05D004404 5.0e-14 81.6 70 64.3
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 1.1e-13 80.5 63 76.2
PGSC0003DMG400019661 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.1e-13 80.5 66 71.2
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 1.5e-13 80.1 74 64.9
Sed0014020 Sechium edule HOM05D001568 ORTHO05D004404 1.5e-13 80.1 69 68.1
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.5e-13 79.3 74 64.9
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 4.3e-13 78.6 70 70.0
Lsat_1_v5_gn_3_94821 Lactuca sativa HOM05D001568 ORTHO05D004404 5.6e-13 78.2 74 62.2
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 9.5e-13 77.4 61 67.2
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 1.2e-12 77.0 69 68.1
Lsat_1_v5_gn_4_175441 Lactuca sativa HOM05D001568 ORTHO05D004404 1.6e-12 76.6 68 66.2
arahy.Tifrunner.gnm1.ann1.IG7GQE Arachis hypogaea HOM05D001568 ORTHO05D004404 2.1e-12 76.3 74 64.9
arahy.Tifrunner.gnm1.ann1.R2NHXZ Arachis hypogaea HOM05D001568 ORTHO05D004404 2.8e-12 75.9 74 60.8
ECA246G2394 Erigeron canadensis HOM05D001568 ORTHO05D004404 2.8e-12 75.9 74 60.8
THA.LOC104822692 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 1.1e-11 73.9 67 62.7
HanXRQChr10g0283701 Helianthus annuus HOM05D001568 ORTHO05D004404 1.4e-11 73.6 74 59.5
CiPaw.03G006700 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.5e-10 70.1 59 72.9
Thhalv10019331m.g Eutrema salsugineum HOM05D001568 ORTHO05D004404 5.8e-10 68.2 84 52.4
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 1.3e-09 67.0 66 56.1
Carub.0002s1347 Capsella rubella HOM05D001568 ORTHO05D004404 1.3e-09 67.0 41 80.5
Potri.004G105800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.7e-09 66.6 75 53.3
MSTRG.23836 Avicennia marina HOM05D001568 ORTHO05D004404 2.2e-09 66.2 90 46.7
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 2.2e-09 66.2 60 61.7
AL2G25700 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 2.9e-09 65.9 84 50.0
CARHR059650 Cardamine hirsuta HOM05D001568 ORTHO05D004404 2.9e-09 65.9 41 78.0
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 3.7e-09 65.5 59 59.3
Sp5g22130 Schrenkiella parvula HOM05D001568 ORTHO05D004404 3.7e-09 65.5 84 48.8
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 8.3e-09 64.3 60 56.7
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 8.3e-09 64.3 60 56.7
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 8.3e-09 64.3 58 58.6
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 1.1e-08 63.9 56 58.9
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 1.4e-08 63.5 58 58.6
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 1.4e-08 63.5 65 52.3
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.4e-08 63.5 59 61.0
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.4e-08 63.5 59 57.6
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.9e-08 63.2 58 56.9
A02p14040 Brassica napus HOM05D001568 ORTHO05D004404 2.4e-08 62.8 41 73.2
BraA02t06465Z Brassica rapa HOM05D001568 ORTHO05D004404 2.4e-08 62.8 41 73.2
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.4e-08 62.8 61 59.0
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 2.4e-08 62.8 60 55.0
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 2.4e-08 62.8 56 60.7
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 2.4e-08 62.8 58 62.1
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.4e-08 62.8 54 63.0
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 3.2e-08 62.4 64 57.8
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 3.2e-08 62.4 58 56.9
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 4.1e-08 62.0 65 55.4
BolC6t39129H Brassica oleracea HOM05D001568 ORTHO05D004404 4.1e-08 62.0 81 46.9
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 4.1e-08 62.0 59 61.0
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 4.1e-08 62.0 56 58.9
Ah.10g037380 Amaranthus hybridus HOM05D001568 ORTHO05D004404 5.4e-08 61.6 69 56.5
A07p33830 Brassica napus HOM05D001568 ORTHO05D004404 5.4e-08 61.6 82 46.3
BraA07t31009Z Brassica rapa HOM05D001568 ORTHO05D004404 5.4e-08 61.6 82 46.3
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 5.4e-08 61.6 58 55.2
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 5.4e-08 61.6 61 57.4
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 5.4e-08 61.6 58 58.6
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 5.4e-08 61.6 58 56.9
C06p43090 Brassica napus HOM05D001568 ORTHO05D004404 7.1e-08 61.2 83 45.8
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 7.1e-08 61.2 56 58.9
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 7.1e-08 61.2 61 54.1
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 9.2e-08 60.8 63 55.6
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 9.2e-08 60.8 58 56.9
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 1.2e-07 60.5 58 55.2
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.2e-07 60.5 58 53.4
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 1.2e-07 60.5 56 55.4
C02p22640 Brassica napus HOM05D001568 ORTHO05D004404 1.6e-07 60.1 41 70.7
BolC2t08417H Brassica oleracea HOM05D001568 ORTHO05D004404 1.6e-07 60.1 41 70.7
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.6e-07 60.1 60 58.3
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 1.6e-07 60.1 59 57.6
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.6e-07 60.1 58 53.4
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.6e-07 60.1 56 57.1
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 1.6e-07 60.1 56 57.1
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 1.6e-07 60.1 56 57.1
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 2.1e-07 59.7 64 53.1
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.1e-07 59.7 59 57.6
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.1e-07 59.7 59 57.6
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.1e-07 59.7 56 57.1
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 2.7e-07 59.3 58 55.2
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 2.7e-07 59.3 58 58.6
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.7e-07 59.3 60 55.0
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 3.5e-07 58.9 60 55.0
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 3.5e-07 58.9 61 57.4
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 3.5e-07 58.9 60 55.0
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 4.6e-07 58.5 61 57.4
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 6.0e-07 58.2 58 53.4
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 6.0e-07 58.2 60 53.3
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 6.0e-07 58.2 58 58.6
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 7.8e-07 57.8 74 47.3
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 7.8e-07 57.8 74 47.3
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 1.0e-06 57.4 61 59.0
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.3e-06 57.0 51 66.7
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 1.3e-06 57.0 59 59.3
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 1.3e-06 57.0 54 57.4
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 1.3e-06 57.0 59 55.9
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 1.7e-06 56.6 54 55.6
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 1.7e-06 56.6 56 62.5
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 1.7e-06 56.6 58 56.9
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 1.7e-06 56.6 62 51.6
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 1.7e-06 56.6 62 51.6
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 2.3e-06 56.2 57 57.9
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 3.0e-06 55.8 64 56.2
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 3.0e-06 55.8 60 55.0
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 3.0e-06 55.8 57 61.4
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 3.9e-06 55.5 58 55.2
MELO3C023781.2 Cucumis melo HOM05D001568 ORTHO05D004404 6.6e-06 54.7 67 53.7
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 6.6e-06 54.7 58 53.4
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 8.6e-06 54.3 55 61.8
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 8.6e-06 54.3 60 55.0


User provided reference genes

Program Settings