Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 5.4e-234 813.9 400 100.0
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 1.2e-222 776.2 404 95.8
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 6.2e-190 667.5 403 82.9
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 1.9e-186 656.0 400 82.8
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 3.8e-179 631.7 404 76.7
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 2.3e-176 622.5 368 83.2
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 4.3e-175 618.2 404 76.0
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 2.4e-173 612.5 406 75.4
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 6.9e-173 610.9 413 75.5
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 9.0e-173 610.5 405 75.3
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.3e-171 606.7 405 74.8
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 1.3e-171 606.7 426 73.9
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 2.5e-170 602.4 398 75.4
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 5.5e-170 601.3 404 75.2
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 5.5e-170 601.3 403 74.2
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 7.2e-170 600.9 410 74.6
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 7.2e-170 600.9 410 74.6
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 1.6e-169 599.7 403 74.2
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 1.6e-169 599.7 403 75.9
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 3.6e-169 598.6 412 74.0
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 4.6e-169 598.2 406 73.9
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 6.1e-169 597.8 445 69.7
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 6.1e-169 597.8 402 73.6
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 7.9e-169 597.4 403 73.7
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 1.8e-168 596.3 401 76.3
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 6.7e-168 594.3 420 72.9
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 1.1e-167 593.6 405 73.3
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 7.4e-167 590.9 410 72.2
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 6.3e-166 587.8 410 72.0
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 1.4e-165 586.6 410 72.0
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 1.4e-165 586.6 339 82.0
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 2.4e-165 585.9 402 73.9
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 3.1e-165 585.5 402 73.9
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 5.3e-165 584.7 402 72.9
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 9.1e-165 583.9 352 80.7
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 9.1e-165 583.9 345 80.9
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 1.5e-164 583.2 410 73.4
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 2.6e-164 582.4 393 74.3
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 4.5e-164 581.6 396 74.0
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 7.7e-164 580.9 402 72.9
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 1.3e-163 580.1 406 71.7
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 1.3e-163 580.1 349 79.1
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 2.9e-163 578.9 364 77.7
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 3.8e-163 578.6 405 72.3
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 6.5e-163 577.8 395 73.7
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 8.5e-163 577.4 398 73.4
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.4e-162 576.6 355 78.0
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.5e-162 575.9 415 70.6
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 3.2e-162 575.5 406 72.2
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 5.5e-162 574.7 405 71.1
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 5.5e-162 574.7 411 70.8
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 2.7e-161 572.4 401 73.8
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 3.6e-161 572.0 385 74.3
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 4.7e-161 571.6 411 70.3
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 6.1e-161 571.2 429 69.2
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 1.4e-160 570.1 404 72.0
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 3.9e-160 568.5 414 71.0
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 8.8e-160 567.4 433 67.0
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 1.1e-159 567.0 401 71.6
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 2.0e-159 566.2 418 69.1
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 3.3e-159 565.5 407 71.5
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 4.4e-159 565.1 412 69.2
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 5.7e-159 564.7 406 70.9
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 7.4e-159 564.3 366 75.4
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 7.4e-159 564.3 405 70.4
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 7.4e-159 564.3 405 70.4
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 7.4e-159 564.3 405 71.1
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 1.3e-158 563.5 415 68.7
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 1.7e-158 563.1 333 80.2
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 2.2e-158 562.8 366 75.1
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 2.2e-158 562.8 413 69.0
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 4.8e-158 561.6 412 68.9
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 4.8e-158 561.6 400 71.5
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 6.3e-158 561.2 416 68.3
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 1.1e-157 560.5 412 69.2
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 1.8e-157 559.7 401 71.3
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 4.1e-157 558.5 417 69.1
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 4.1e-157 558.5 403 70.7
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 9.1e-157 557.4 416 68.5
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 3.5e-156 555.4 410 68.8
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 3.5e-156 555.4 352 75.9
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 4.5e-156 555.1 418 67.7
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 7.7e-156 554.3 414 69.1
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 1.0e-155 553.9 343 78.4
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 1.0e-155 553.9 397 69.8
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 1.3e-155 553.5 366 74.3
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 1.5e-154 550.1 360 73.9
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 1.9e-154 549.7 341 76.5
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 4.2e-154 548.5 359 70.8
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 1.6e-153 546.6 413 68.3
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 2.7e-153 545.8 399 68.2
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 3.6e-153 545.4 342 77.2
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 1.4e-152 543.5 398 68.3
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 1.8e-152 543.1 413 67.1
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 3.0e-152 542.3 411 67.6
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 3.0e-152 542.3 330 77.6
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 4.0e-152 542.0 330 78.8
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 4.0e-152 542.0 393 70.5
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 6.3e-150 534.6 334 76.0
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 2.4e-149 532.7 392 68.6
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 3.1e-149 532.3 330 76.1
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 5.9e-148 528.1 378 70.6
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 2.2e-147 526.2 412 67.2
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 2.2e-147 526.2 412 67.5
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 2.2e-147 526.2 412 67.5
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 2.2e-147 526.2 298 83.6
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 7.2e-146 521.2 366 72.7
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 7.2e-146 521.2 416 64.9
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 1.2e-145 520.4 376 66.2
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 2.3e-144 516.2 416 64.4
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 1.3e-142 510.4 374 68.7
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 4.8e-142 508.4 352 71.0
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 3.1e-141 505.8 331 72.2
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 4.1e-141 505.4 283 83.4
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 9.1e-141 504.2 331 72.8
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 4.5e-140 501.9 296 79.1
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 3.8e-139 498.8 431 63.6
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 6.5e-139 498.0 399 64.2
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 6.1e-137 491.5 329 69.6
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 6.1e-137 491.5 415 62.7
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 3.1e-133 479.2 357 64.4
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 2.3e-131 473.0 325 70.8
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 2.3e-131 473.0 329 68.7
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 8.9e-128 461.1 333 71.8
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 1.7e-126 456.8 279 76.7
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 1.6e-124 450.3 326 68.4
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 3.0e-123 446.0 330 63.9
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 1.5e-114 417.2 259 77.6
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 2.0e-111 406.8 337 57.6
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 2.6e-111 406.4 357 58.8
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 1.1e-101 374.4 321 56.4
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 5.4e-101 372.1 299 59.2
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 3.5e-100 369.4 283 66.1
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 3.3e-98 362.8 337 59.3
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 4.6e-92 342.4 252 70.6
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 4.0e-88 329.3 236 70.8
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 1.1e-85 321.2 188 84.0
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 2.7e-84 316.6 358 50.6
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 3.7e-73 279.6 395 43.5
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 7.1e-69 265.4 157 80.3
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 3.3e-66 256.5 275 50.9
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 1.5e-58 231.1 307 45.3
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 5.7e-58 229.2 143 73.4
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 6.5e-54 215.7 243 52.7
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 1.4e-51 208.0 235 50.2
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 1.4e-48 198.0 303 42.9
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.0e-43 181.8 179 55.3
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 1.4e-40 171.4 179 54.2
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 1.4e-40 171.4 179 54.2
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 3.5e-39 166.8 116 71.6
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 1.3e-38 164.9 126 64.3
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 4.0e-35 153.3 122 63.1
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 6.5e-30 136.0 226 38.5
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 4.0e-27 126.7 155 49.0
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 4.0e-27 126.7 155 49.0
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 4.0e-19 100.1 80 58.8
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 4.0e-19 100.1 80 58.8
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 7.5e-18 95.9 170 38.2
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 4.3e-13 80.1 51 72.5
arahy.Tifrunner.gnm1.ann1.J07EWC Arachis hypogaea HOM05D004356 ORTHO05D005542 2.7e-07 60.8 39 69.2
SHI20361 Sapria himalayana HOM05D004356 ORTHO05D365714 2.7e-07 60.8 47 59.6
Actinidia29603 Actinidia chinensis HOM05D000367 ORTHO05D002159 5.9e-07 59.7 41 70.7
arahy.Tifrunner.gnm1.ann1.E3H3WY Arachis hypogaea HOM05D000075 ORTHO05D000073 7.8e-07 59.3 44 61.4


User provided reference genes

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