Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 4.9e-44 180.6 85 100.0
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 3.0e-41 171.4 85 96.5
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.9e-40 168.7 85 94.1
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 7.6e-21 103.6 81 59.3
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 7.6e-21 103.6 81 59.3
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 7.6e-21 103.6 81 59.3
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 6.5e-20 100.5 85 61.2
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 2.5e-19 98.6 81 58.0
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 3.2e-19 98.2 79 63.3
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 9.3e-19 96.7 75 65.3
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 1.0e-17 93.2 85 55.3
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 1.8e-17 92.4 82 57.3
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 5.1e-17 90.9 82 54.9
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 2.5e-16 88.6 80 60.0
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.3e-16 88.2 83 59.0
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 3.3e-16 88.2 83 59.0
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 7.4e-16 87.0 84 48.8
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 7.4e-16 87.0 75 53.3
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 7.4e-16 87.0 85 57.6
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 1.3e-15 86.3 83 54.2
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 1.3e-15 86.3 83 54.2
Actinidia13165 Actinidia chinensis HOM05D006892 ORTHO05D008592 1.8e-14 82.4 75 56.0
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 1.8e-14 82.4 59 64.4
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 3.1e-14 81.6 76 55.3
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 3.1e-14 81.6 85 62.4
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 4.1e-14 81.3 85 47.1
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 4.1e-14 81.3 81 53.1
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 5.3e-14 80.9 85 45.9
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 6.9e-14 80.5 85 54.1
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 9.0e-14 80.1 84 48.8
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 9.0e-14 80.1 82 54.9
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 9.0e-14 80.1 78 51.3
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 1.2e-13 79.7 79 48.1
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.2e-13 79.7 79 54.4
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.0e-13 79.0 84 47.6
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 2.0e-13 79.0 84 47.6
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 4.5e-13 77.8 84 47.6
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 4.5e-13 77.8 84 47.6
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 5.9e-13 77.4 90 47.8
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 5.9e-13 77.4 84 47.6
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 5.9e-13 77.4 79 46.8
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 7.7e-13 77.0 86 53.5
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 7.7e-13 77.0 84 44.0
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 7.7e-13 77.0 79 49.4
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 7.7e-13 77.0 75 54.7
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 1.7e-12 75.9 81 49.4
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 2.9e-12 75.1 79 49.4
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 2.9e-12 75.1 75 49.3
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 3.8e-12 74.7 78 51.3
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 6.5e-12 73.9 76 46.1
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 6.5e-12 73.9 78 53.8
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 1.1e-11 73.2 79 44.3
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 1.1e-11 73.2 80 47.5
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.4e-11 72.8 60 55.0
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 2.5e-11 72.0 80 47.5
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 4.2e-11 71.2 58 58.6
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 4.2e-11 71.2 85 45.9
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 5.5e-11 70.9 83 48.2
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 5.5e-11 70.9 85 48.2
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 5.5e-11 70.9 85 42.4
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 7.2e-11 70.5 50 58.0
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 7.2e-11 70.5 76 46.1
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 9.4e-11 70.1 76 42.1
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 9.4e-11 70.1 76 46.1
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 1.2e-10 69.7 73 42.5
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 1.2e-10 69.7 78 48.7
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 1.2e-10 69.7 81 44.4
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 1.6e-10 69.3 70 51.4
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 1.6e-10 69.3 70 51.4
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 2.1e-10 68.9 51 52.9
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 2.1e-10 68.9 51 52.9
CAN.G697.1 Capsicum annuum HOM05D006892 ORTHO05D008592 4.6e-10 67.8 97 44.3
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 4.6e-10 67.8 78 47.4
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 4.6e-10 67.8 74 50.0
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 4.6e-10 67.8 85 44.7
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 1.0e-09 66.6 80 43.8
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 1.0e-09 66.6 68 51.5
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 1.4e-09 66.2 79 45.6
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 3.9e-09 64.7 74 50.0
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 5.1e-09 64.3 83 42.2
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 8.8e-09 63.5 82 45.1
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 8.8e-09 63.5 77 45.5
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 1.9e-08 62.4 82 43.9
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 1.9e-08 62.4 44 52.3
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.9e-08 62.4 46 58.7
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 1.9e-08 62.4 82 43.9
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 3.3e-08 61.6 86 50.0
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 3.3e-08 61.6 75 42.7
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 3.3e-08 61.6 81 44.4
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 4.3e-08 61.2 80 45.0
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 5.7e-08 60.8 79 44.3
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 5.7e-08 60.8 74 47.3
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 5.7e-08 60.8 39 59.0
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 7.4e-08 60.5 91 40.7
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 9.7e-08 60.1 42 57.1
Actinidia02903 Actinidia chinensis HOM05D006892 ORTHO05D008592 1.7e-07 59.3 84 40.5
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 1.7e-07 59.3 60 55.0
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 2.2e-07 58.9 66 40.9
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 2.8e-07 58.5 51 54.9
TAR633G0009 Trochodendron aralioides HOM05D006892 ORTHO05D414936 3.7e-07 58.2 80 48.8
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 4.8e-07 57.8 88 43.2
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 1.4e-06 56.2 37 59.5
Sc07g0007010 Simmondsia chinensis HOM05D006892 ORTHO05D008592 3.1e-06 55.1 87 39.1
Cpa.g.sc19.256 Carica papaya HOM05D006892 ORTHO05D008592 6.9e-06 53.9 77 41.6
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 6.9e-06 53.9 83 39.8
Sopen03g027280 Solanum pennellii HOM05D006892 ORTHO05D008592 6.9e-06 53.9 37 54.1
Sopen09g006190 Solanum pennellii HOM05D006892 ORTHO05D008592 9.1e-06 53.5 67 44.8


User provided reference genes

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