Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005499 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 5.3e-35 150.6 83 100.0
CSS0005985 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 1.5e-34 149.1 83 98.8
Nitab4.5_0003551g0100 Nicotiana tabacum HOM05D006325 ORTHO05D007878 7.7e-18 93.6 81 69.1
Nitab4.5_0003551g0110 Nicotiana tabacum HOM05D006325 ORTHO05D007878 5.0e-17 90.9 78 69.2
PGSC0003DMG402022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 5.0e-17 90.9 81 67.9
PGSC0003DMG403011204 Solanum tuberosum HOM05D006325 ORTHO05D007878 5.0e-17 90.9 81 67.9
Hma1.2p1_0594F.1_g185940 Hydrangea macrophylla HOM05D006325 ORTHO05D007878 8.5e-17 90.1 83 63.9
Nitab4.5_0002611g0130 Nicotiana tabacum HOM05D006325 ORTHO05D007878 8.5e-17 90.1 79 65.8
CAN.G160.11 Capsicum annuum HOM05D006325 ORTHO05D007878 4.2e-16 87.8 82 62.2
PGSC0003DMG400011149 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.2e-15 86.3 80 65.0
Phvul.002G178300 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 2.7e-15 85.1 80 62.5
Phvul.002G179400 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 2.7e-15 85.1 80 62.5
Ca_18164_v3 Cicer arietinum L. HOM05D006325 ORTHO05D007878 1.0e-14 83.2 87 57.5
CAN.G160.12 Capsicum annuum HOM05D006325 ORTHO05D007878 5.2e-14 80.9 105 50.5
Sopen07g002010 Solanum pennellii HOM05D006325 ORTHO05D007878 5.2e-14 80.9 83 62.7
Sopen11g011030 Solanum pennellii HOM05D006325 ORTHO05D007878 8.8e-14 80.1 75 60.0
Ciclev10026747m.g Citrus clementina HOM05D006325 ORTHO05D007878 1.2e-13 79.7 77 61.0
Ciclev10026858m.g Citrus clementina HOM05D006325 ORTHO05D007878 1.2e-13 79.7 78 61.5
Lalb_Chr13g0293971 Lupinus albus HOM05D006325 ORTHO05D007878 1.2e-13 79.7 90 60.0
RcHm_v2.0_Chr5g0014631 Rosa chinensis HOM05D006325 ORTHO05D007878 1.2e-13 79.7 98 54.1
PGSC0003DMG401022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.2e-13 79.7 82 59.8
Solyc11g020860.1 Solanum lycopersicum HOM05D006325 ORTHO05D007878 1.5e-13 79.3 76 63.2
Prupe.4G084800 Prunus persica HOM05D006325 ORTHO05D007878 2.0e-13 79.0 93 57.0
FvH4_3g05130 Fragaria vesca HOM05D006325 ORTHO05D007878 2.6e-13 78.6 88 58.0
CAN.G2122.1 Capsicum annuum HOM05D006325 ORTHO05D007878 3.4e-13 78.2 102 50.0
MD10G1258900 Malus domestica HOM05D006325 ORTHO05D007878 3.4e-13 78.2 96 56.2
Nn3g20453 Nelumbo nucifera HOM05D006325 ORTHO05D007878 5.7e-13 77.4 86 61.6
CAN.G160.10 Capsicum annuum HOM05D006325 ORTHO05D007878 7.5e-13 77.0 102 50.0
CiPaw.10G089300 Carya illinoinensis HOM05D006325 ORTHO05D007878 9.8e-13 76.6 89 59.6
CiPaw.09G120800 Carya illinoinensis HOM05D006325 ORTHO05D007878 1.3e-12 76.3 84 57.1
CsaV3_6G051960 Cucumis sativus L. HOM05D006325 ORTHO05D007878 1.3e-12 76.3 86 54.7
MELO3C007112.2 Cucumis melo HOM05D006325 ORTHO05D007878 2.8e-12 75.1 85 56.5
Potri.011G081001 Populus trichocarpa HOM05D006325 ORTHO05D007878 3.7e-12 74.7 80 53.8
FAN21G1261 Fragaria x ananassa HOM05D006325 ORTHO05D007878 4.8e-12 74.3 88 54.5
FAN25G3009 Fragaria x ananassa HOM05D006325 ORTHO05D007878 4.8e-12 74.3 88 54.5
Lalb_Chr07g0187521 Lupinus albus HOM05D006325 ORTHO05D007878 4.8e-12 74.3 99 49.5
Medtr4g083110 Medicago truncatula HOM05D006325 ORTHO05D007878 4.8e-12 74.3 83 56.6
FAN11G2857 Fragaria x ananassa HOM05D006325 ORTHO05D007878 6.3e-12 73.9 88 54.5
Psat7g080360 Pisum sativum HOM05D006325 ORTHO05D007878 6.3e-12 73.9 95 51.6
Psat7g080440 Pisum sativum HOM05D006325 ORTHO05D007878 1.1e-11 73.2 91 52.7
PGSC0003DMG400009263 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.1e-11 73.2 77 55.8
TWI09G0296 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 1.4e-11 72.8 95 54.7
Glyma.08G099000 Glycine max HOM05D006325 ORTHO05D007878 1.8e-11 72.4 88 52.3
Manes.17G073700 Manihot esculenta HOM05D006325 ORTHO05D007878 1.8e-11 72.4 80 56.2
Potri.004G133180 Populus trichocarpa HOM05D006325 ORTHO05D007878 1.8e-11 72.4 80 52.5
Thecc.06G145500 Theobroma cacao HOM05D006325 ORTHO05D007878 1.8e-11 72.4 81 58.0
CAN.G2122.2 Capsicum annuum HOM05D006325 ORTHO05D007878 3.1e-11 71.6 78 56.4
FAN16G1041 Fragaria x ananassa HOM05D006325 ORTHO05D007878 3.1e-11 71.6 88 53.4
FAN16G2667 Fragaria x ananassa HOM05D006325 ORTHO05D007878 3.1e-11 71.6 88 53.4
Haze_05647 Corylus avellana HOM05D006325 ORTHO05D007878 4.1e-11 71.2 80 58.8
Medtr5g077640 Medicago truncatula HOM05D006325 ORTHO05D007878 4.1e-11 71.2 87 54.0
Sed0008419 Sechium edule HOM05D006325 ORTHO05D007878 4.1e-11 71.2 80 55.0
Sabra11G0064500 Salix brachista HOM05D006325 ORTHO05D007878 5.4e-11 70.9 82 51.2
TWI53G1846 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 5.4e-11 70.9 95 50.5
QL05p055432 Quercus lobata HOM05D006325 ORTHO05D007878 7.0e-11 70.5 85 54.1
ClCG01G024840 Citrullus lanatus HOM05D006325 ORTHO05D007878 1.2e-10 69.7 50 72.0
TPR.G34042 Trifolium pratense HOM05D006325 ORTHO05D007878 1.2e-10 69.7 85 49.4
Cc00_g01980 Coffea canephora HOM05D006325 ORTHO05D007878 1.6e-10 69.3 81 51.9
Psat7g080320 Pisum sativum HOM05D006325 ORTHO05D007878 1.6e-10 69.3 90 45.6
QL04p045948 Quercus lobata HOM05D006325 ORTHO05D007878 2.0e-10 68.9 65 61.5
Sopen07g002000 Solanum pennellii HOM05D006325 ORTHO05D007878 2.0e-10 68.9 81 55.6
QL04p045922 Quercus lobata HOM05D006325 ORTHO05D007878 3.5e-10 68.2 59 64.4
Sp1g26100 Schrenkiella parvula HOM05D006325 ORTHO05D007878 3.5e-10 68.2 54 68.5
Cpa.g.sc17.42 Carica papaya HOM05D006325 ORTHO05D007878 4.5e-10 67.8 88 50.0
BcaB03g13839 Brassica carinata HOM05D006325 ORTHO05D007878 7.7e-10 67.0 50 68.0
BcaC06g35496 Brassica carinata HOM05D006325 ORTHO05D007878 7.7e-10 67.0 50 68.0
A07p10030 Brassica napus HOM05D006325 ORTHO05D007878 7.7e-10 67.0 50 68.0
BolC7t42032H Brassica oleracea HOM05D006325 ORTHO05D007878 7.7e-10 67.0 50 68.0
BraA07t28796Z Brassica rapa HOM05D006325 ORTHO05D007878 7.7e-10 67.0 50 68.0
Glyma.05G143000 Glycine max HOM05D006325 ORTHO05D007878 7.7e-10 67.0 87 49.4
DCAR_007876 Daucus carota HOM05D006325 ORTHO05D007878 1.0e-09 66.6 81 53.1
Duzib192G0952 Durio zibethinus HOM05D006325 ORTHO05D007878 1.0e-09 66.6 84 50.0
TPR.G13312 Trifolium pratense HOM05D006325 ORTHO05D007878 1.0e-09 66.6 91 49.5
CANSAT35G0285 Cannabis sativa HOM05D006325 ORTHO05D007878 1.3e-09 66.2 51 68.6
Thhalv10009295m.g Eutrema salsugineum HOM05D006325 ORTHO05D007878 1.3e-09 66.2 52 67.3
TPR.G21965 Trifolium pratense HOM05D006325 ORTHO05D007878 2.2e-09 65.5 95 47.4
Carub.0001s2849 Capsella rubella HOM05D006325 ORTHO05D007878 2.9e-09 65.1 58 62.1
Ciclev10017179m.g Citrus clementina HOM05D006325 ORTHO05D007878 2.9e-09 65.1 88 47.7
AL1G44210 Arabidopsis lyrata HOM05D006325 ORTHO05D007878 3.8e-09 64.7 63 58.7
BcaB07g32625 Brassica carinata HOM05D006325 ORTHO05D007878 3.8e-09 64.7 68 57.4
CAN.G160.9 Capsicum annuum HOM05D006325 ORTHO05D007878 3.8e-09 64.7 79 51.9
BcaC05g27053 Brassica carinata HOM05D006325 ORTHO05D007878 5.0e-09 64.3 74 52.7
C05p29100 Brassica napus HOM05D006325 ORTHO05D007878 5.0e-09 64.3 74 52.7
BolC5t31641H Brassica oleracea HOM05D006325 ORTHO05D007878 5.0e-09 64.3 74 52.7
BraA09t39151Z Brassica rapa HOM05D006325 ORTHO05D007878 5.0e-09 64.3 68 57.4
Gorai.009G153100 Gossypium raimondii HOM05D006325 ORTHO05D007878 5.0e-09 64.3 79 53.2
A09p36260 Brassica napus HOM05D006325 ORTHO05D007878 1.5e-08 62.8 67 56.7
MELO3C002763.2 Cucumis melo HOM05D006325 ORTHO05D007878 1.5e-08 62.8 82 48.8
Eucgr.D00273 Eucalyptus grandis HOM05D006325 ORTHO05D007878 1.5e-08 62.8 48 70.8
AT1G30260 Arabidopsis thaliana HOM05D006325 ORTHO05D007878 1.9e-08 62.4 49 65.3
CARHR029650 Cardamine hirsuta HOM05D006325 ORTHO05D007878 1.9e-08 62.4 49 63.3
Lsat_1_v5_gn_0_34220 Lactuca sativa HOM05D006325 ORTHO05D007878 1.9e-08 62.4 77 53.2
Nitab4.5_0008310g0030 Nicotiana tabacum HOM05D006325 ORTHO05D007878 1.9e-08 62.4 61 52.5
Gohir.A05G146600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 2.5e-08 62.0 78 53.8
Nn4g26622 Nelumbo nucifera HOM05D006325 ORTHO05D007878 2.5e-08 62.0 50 66.0
Gohir.D05G149100 Gossypium hirsutum HOM05D006325 ORTHO05D007878 3.2e-08 61.6 78 53.8
Lsat_1_v5_gn_7_27621 Lactuca sativa HOM05D006325 ORTHO05D007878 3.2e-08 61.6 86 48.8
ClCG03G006550 Citrullus lanatus HOM05D006325 ORTHO05D007878 7.2e-08 60.5 87 44.8
Lj4g0007216 Lotus japonicus HOM05D006325 ORTHO05D007878 7.2e-08 60.5 87 47.1
Medtr5g077680 Medicago truncatula HOM05D006325 ORTHO05D007878 7.2e-08 60.5 48 64.6
Medtr8g079458 Medicago truncatula HOM05D006325 ORTHO05D007878 7.2e-08 60.5 48 64.6
Peaxi162Scf00062g00009 Petunia axillaris HOM05D006325 ORTHO05D007878 9.4e-08 60.1 61 55.7
COL.COLO4_31021 Corchorus olitorius HOM05D006325 ORTHO05D007878 1.6e-07 59.3 63 57.1
CsaV3_1G036810 Cucumis sativus L. HOM05D006325 ORTHO05D007878 1.6e-07 59.3 80 48.8
Medtr4g012020 Medicago truncatula HOM05D006325 ORTHO05D007878 1.6e-07 59.3 48 64.6
Manes.15G124400 Manihot esculenta HOM05D006325 ORTHO05D007878 2.1e-07 58.9 60 61.7
Gohir.A06G139600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 4.7e-07 57.8 57 59.6
MBI02_g07020_MAGBIO Magnolia biondii HOM05D006325 ORTHO05D007878 4.7e-07 57.8 50 68.0
Medtr1437s0010 Medicago truncatula HOM05D006325 ORTHO05D007878 4.7e-07 57.8 48 60.4
Duzib160G0583 Durio zibethinus HOM05D006325 ORTHO05D007878 6.1e-07 57.4 56 57.1
Oeu030957.1 Olea europaea HOM05D006325 ORTHO05D007878 6.1e-07 57.4 61 52.5
PSO541G2396 Papaver somniferum HOM05D006325 ORTHO05D007878 6.1e-07 57.4 88 46.6
Aa31LG6G5500 Aethionema arabicum HOM05D006325 ORTHO05D007878 8.0e-07 57.0 51 62.7
Lj4g0010729 Lotus japonicus HOM05D006325 ORTHO05D007878 1.8e-06 55.8 85 44.7
Gohir.D06G144350 Gossypium hirsutum HOM05D006325 ORTHO05D007878 2.3e-06 55.5 57 57.9
Gorai.010G168000 Gossypium raimondii HOM05D006325 ORTHO05D007878 2.3e-06 55.5 57 57.9
Oeu030955.1 Olea europaea HOM05D006325 ORTHO05D007878 2.3e-06 55.5 38 68.4
Aqoxy4G00063 Aquilegia oxysepala HOM05D006325 ORTHO05D007878 6.8e-06 53.9 75 48.0


User provided reference genes

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