Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 1.6e-189 666.0 346 100.0
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 2.0e-168 595.9 347 88.2
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 2.0e-160 569.3 346 85.0
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 4.9e-159 564.7 345 83.5
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 4.2e-158 561.6 367 80.9
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 5.4e-158 561.2 346 82.1
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 9.3e-158 560.5 346 82.9
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 9.3e-158 560.5 346 82.9
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 1.2e-157 560.1 346 82.4
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 2.1e-157 559.3 346 81.8
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 2.3e-156 555.8 345 82.3
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 5.1e-156 554.7 346 82.1
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 1.1e-155 553.5 346 82.1
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 4.3e-155 551.6 346 79.5
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 9.6e-155 550.4 346 80.9
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 1.4e-153 546.6 346 78.6
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.8e-153 546.2 346 78.6
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 3.1e-153 545.4 346 80.1
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 6.9e-153 544.3 346 80.9
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 1.2e-152 543.5 351 80.3
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.6e-152 542.3 346 78.3
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 4.5e-152 541.6 349 80.8
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 1.3e-151 540.0 346 78.3
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 2.2e-151 539.3 346 79.5
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 2.2e-151 539.3 346 79.8
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 4.9e-151 538.1 346 79.5
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 6.4e-151 537.7 347 78.4
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 6.4e-151 537.7 346 79.2
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 8.4e-151 537.3 346 77.5
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 1.4e-150 536.6 346 79.2
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 3.2e-150 535.4 346 77.2
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 4.2e-150 535.0 346 79.8
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 4.2e-150 535.0 346 79.8
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 5.5e-150 534.6 344 78.8
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 3.5e-149 531.9 346 78.3
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 6.0e-149 531.2 347 78.1
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 6.0e-149 531.2 346 78.9
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 7.9e-149 530.8 346 79.2
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 1.3e-148 530.0 346 78.0
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 1.8e-148 529.6 346 78.9
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 1.8e-148 529.6 346 78.9
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 2.3e-148 529.3 346 78.6
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 3.9e-148 528.5 347 77.8
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 8.7e-148 527.3 393 72.5
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 1.9e-147 526.2 344 77.3
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 3.3e-147 525.4 346 78.3
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 5.6e-147 524.6 344 77.0
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 2.8e-146 522.3 344 76.2
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 4.8e-146 521.5 344 76.7
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 6.2e-146 521.2 344 76.2
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 6.2e-146 521.2 344 76.2
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 6.2e-146 521.2 344 76.5
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 6.2e-146 521.2 344 76.2
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 6.2e-146 521.2 347 78.4
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 1.1e-145 520.4 344 76.5
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 1.8e-145 519.6 344 75.9
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 1.8e-145 519.6 344 75.9
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 1.8e-145 519.6 344 75.9
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 1.8e-145 519.6 345 78.8
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 2.4e-145 519.2 326 82.2
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 9.0e-145 517.3 338 77.5
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 3.4e-144 515.4 346 75.7
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 7.6e-144 514.2 344 75.6
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 2.2e-143 512.7 344 75.3
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 2.9e-143 512.3 356 73.9
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 2.9e-143 512.3 346 76.9
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 3.8e-143 511.9 344 75.3
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 4.9e-143 511.5 346 76.6
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 1.4e-142 510.0 345 76.2
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 7.1e-142 507.7 346 74.9
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 1.2e-141 506.9 347 74.6
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 1.6e-141 506.5 347 74.9
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 2.7e-141 505.8 342 74.9
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 6.0e-141 504.6 345 75.7
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 3.0e-140 502.3 356 72.5
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 3.0e-140 502.3 346 76.0
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 3.9e-140 501.9 347 76.1
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 5.1e-140 501.5 346 74.6
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 2.5e-139 499.2 346 74.6
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 9.7e-139 497.3 344 75.0
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 1.3e-138 496.9 346 72.0
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 1.3e-138 496.9 352 73.9
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 2.8e-138 495.7 338 76.6
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 4.8e-138 495.0 337 73.3
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 1.4e-137 493.4 346 74.0
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 1.2e-136 490.3 416 64.9
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 1.7e-135 486.5 359 71.9
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 1.8e-132 476.5 309 76.7
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 3.9e-132 475.3 346 72.0
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 1.3e-130 470.3 337 72.4
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 3.1e-129 465.7 309 78.0
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 4.1e-129 465.3 314 77.1
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 4.1e-129 465.3 337 70.6
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 2.0e-128 463.0 272 84.9
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 7.7e-128 461.1 400 63.2
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 1.3e-127 460.3 345 68.7
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 2.2e-127 459.5 295 81.7
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 6.5e-127 458.0 293 82.6
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 9.4e-126 454.1 309 75.4
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 1.6e-125 453.4 346 70.8
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 4.7e-125 451.8 272 82.4
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 2.4e-121 439.5 346 68.2
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 4.5e-120 435.3 344 66.6
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.3e-119 433.7 346 67.9
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 1.8e-116 423.3 329 70.5
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 2.3e-116 422.9 346 66.5
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 8.8e-116 421.0 419 58.0
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 6.7e-108 394.8 222 87.8
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 1.0e-103 380.9 222 83.8
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 1.1e-102 377.5 385 54.5
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 4.2e-102 375.6 344 59.3
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.7e-98 363.6 346 60.4
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 1.0e-92 344.4 436 50.7
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 3.7e-90 335.9 246 69.1
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.1e-89 334.3 204 81.4
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 2.9e-87 326.2 345 55.1
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 2.9e-82 309.7 356 48.0
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 8.6e-79 298.1 250 60.8
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 4.7e-77 292.4 250 62.0
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 2.9e-74 283.1 201 70.6
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 1.1e-73 281.2 169 81.7
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 1.1e-68 264.6 274 48.9
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 1.4e-65 254.2 251 55.8
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 8.7e-55 218.4 144 72.9
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 1.5e-54 217.6 144 78.5
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 3.3e-54 216.5 236 55.5
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 1.6e-53 214.2 166 68.7
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 7.6e-51 205.3 110 96.4
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 7.1e-49 198.7 194 54.6
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 9.6e-46 188.3 343 36.7
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 1.3e-45 188.0 185 59.5
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 4.8e-45 186.0 131 72.5
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 4.9e-42 176.0 361 33.8
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 2.1e-40 170.6 323 33.4
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 3.3e-38 163.3 343 34.4
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 1.8e-36 157.5 133 66.2
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 8.2e-29 132.1 113 61.1
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 3.1e-28 130.2 74 87.8
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.5e-25 120.6 96 63.5
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 4.6e-24 116.3 95 71.6
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 2.5e-22 110.5 107 59.8
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 5.3e-20 102.8 73 65.8
MD01G1007700 Malus domestica HOM05D005314 ORTHO05D246798 9.7e-06 55.5 31 83.9


User provided reference genes

Program Settings