Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 7.1e-192 673.7 325 100.0
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 1.8e-126 456.4 300 74.0
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 5.5e-120 434.9 341 66.0
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.7e-113 413.3 312 67.6
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 1.9e-112 409.8 303 67.3
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 9.8e-109 397.5 306 65.0
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 1.8e-107 393.3 306 64.7
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 5.9e-106 388.3 237 76.8
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 2.3e-105 386.3 298 64.8
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 2.9e-105 386.0 306 64.7
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 7.3e-104 381.3 285 68.1
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 7.3e-104 381.3 285 68.1
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 7.3e-104 381.3 306 66.0
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 1.6e-103 380.2 309 62.1
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 1.6e-103 380.2 224 77.7
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 3.6e-103 379.0 302 63.9
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 1.4e-102 377.1 299 65.6
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 4.0e-102 375.6 228 76.3
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 1.2e-101 374.0 297 64.3
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 9.8e-101 370.9 296 63.5
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 1.3e-100 370.5 301 63.5
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 1.7e-100 370.2 304 62.8
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 2.9e-100 369.4 295 64.4
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 3.7e-100 369.0 298 62.8
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 4.9e-100 368.6 299 64.9
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 4.9e-100 368.6 228 73.2
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 6.4e-100 368.2 218 78.4
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 6.4e-100 368.2 227 74.9
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 8.3e-100 367.9 228 76.3
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 1.1e-99 367.5 251 71.7
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.4e-99 367.1 295 64.1
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 3.2e-99 365.9 313 60.7
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 5.4e-99 365.2 227 74.0
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 7.0e-99 364.8 301 62.1
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 9.2e-99 364.4 295 63.7
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 2.7e-98 362.8 230 73.0
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 2.7e-98 362.8 227 73.1
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 3.5e-98 362.5 230 73.5
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 4.6e-98 362.1 311 59.2
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 1.0e-97 360.9 216 77.8
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 1.7e-97 360.1 231 73.6
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 2.3e-97 359.8 257 68.1
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 3.0e-97 359.4 236 69.9
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 3.0e-97 359.4 224 72.3
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 3.9e-97 359.0 223 74.0
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 5.0e-97 358.6 218 77.1
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 6.6e-97 358.2 217 76.0
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 8.6e-97 357.8 216 77.8
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 1.1e-96 357.5 220 74.1
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.5e-96 357.1 295 62.4
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 1.5e-96 357.1 237 72.2
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 1.5e-96 357.1 314 59.6
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 4.3e-96 355.5 225 73.8
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 5.6e-96 355.1 257 66.9
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 7.3e-96 354.8 250 70.0
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.1e-95 353.2 223 74.0
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 2.8e-95 352.8 225 74.7
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 3.6e-95 352.4 224 72.8
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 6.2e-95 351.7 297 59.9
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 4.0e-94 349.0 226 73.0
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 5.2e-94 348.6 255 68.6
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 5.2e-94 348.6 229 72.9
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 8.9e-94 347.8 300 61.3
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 8.9e-94 347.8 217 74.7
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 8.9e-94 347.8 233 72.5
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 1.5e-93 347.1 223 70.4
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 2.0e-93 346.7 287 59.6
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 2.0e-93 346.7 208 75.5
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 2.6e-93 346.3 244 68.4
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 7.5e-93 344.7 287 59.2
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 7.5e-93 344.7 308 57.5
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 7.5e-93 344.7 221 73.8
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 1.3e-92 344.0 229 72.1
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 1.7e-92 343.6 287 57.8
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 2.2e-92 343.2 222 71.2
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 2.2e-92 343.2 218 72.9
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 2.9e-92 342.8 220 72.3
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 4.9e-92 342.0 291 60.8
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 4.9e-92 342.0 224 73.7
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 6.4e-92 341.7 312 57.7
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 1.1e-91 340.9 256 63.3
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 1.1e-91 340.9 217 72.8
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 3.2e-91 339.3 222 70.3
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 3.2e-91 339.3 221 73.8
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 3.2e-91 339.3 237 68.4
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 2.0e-90 336.7 252 63.9
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 2.7e-90 336.3 306 55.9
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 2.7e-90 336.3 274 62.0
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 7.8e-90 334.7 291 59.1
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.0e-89 334.3 363 51.8
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 1.0e-89 334.3 214 72.9
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 1.1e-88 330.9 213 72.3
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 1.1e-88 330.9 214 73.4
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 1.5e-88 330.5 220 71.8
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 4.3e-88 328.9 223 67.7
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 9.5e-88 327.8 203 74.4
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 1.6e-87 327.0 231 67.5
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 1.6e-87 327.0 214 68.2
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 4.7e-87 325.5 222 69.8
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 1.4e-86 323.9 217 67.7
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 1.4e-86 323.9 221 69.7
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 1.8e-86 323.6 250 62.8
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 4.0e-86 322.4 233 63.9
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 5.2e-86 322.0 212 72.2
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 4.4e-85 318.9 233 67.0
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 1.3e-84 317.4 218 67.0
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 2.2e-84 316.6 218 67.0
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 2.2e-84 316.6 218 67.0
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 2.3e-81 306.6 307 55.0
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 1.9e-80 303.5 191 77.0
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 6.4e-76 288.5 178 75.8
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 4.1e-75 285.8 247 60.7
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 7.1e-75 285.0 307 53.4
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 9.2e-75 284.6 359 44.6
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 3.5e-74 282.7 257 57.2
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 7.3e-72 275.0 330 50.0
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 2.6e-69 266.5 222 61.7
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 3.8e-68 262.7 248 51.2
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 5.4e-67 258.8 253 54.9
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.0e-65 254.6 230 57.8
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.4e-59 234.2 190 58.4
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 3.2e-59 233.0 162 64.2
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 3.2e-59 233.0 237 52.7
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 2.7e-58 229.9 129 76.7
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 7.4e-56 221.9 164 65.9
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 1.3e-55 221.1 216 53.7
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 6.2e-55 218.8 129 72.9
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 4.0e-54 216.1 127 73.2
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 1.2e-50 204.5 190 57.9
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 6.2e-47 192.2 227 48.5
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 8.4e-44 181.8 151 57.6
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 2.7e-42 176.8 124 58.9
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 5.9e-37 159.1 95 75.8
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 1.9e-35 154.1 197 41.1
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 4.8e-31 139.4 90 71.1
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 5.5e-27 125.9 133 52.6
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 1.0e-20 105.1 162 44.4
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 7.4e-16 89.0 143 44.1
RcHm_v2.0_Chr6g0274061 Rosa chinensis HOM05D005134 ORTHO05D006548 2.7e-10 70.5 71 57.7
FAN06G2241 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.2e-08 65.1 32 84.4


User provided reference genes

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