Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005448 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 3.3e-209 731.5 380 100.0
CSS0031641 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 9.0e-130 467.6 235 96.2
Actinidia19593 Actinidia chinensis HOM05D002617 ORTHO05D006076 3.8e-96 355.9 284 66.2
Dinv34860 Davidia involucrata HOM05D002617 ORTHO05D006076 5.0e-96 355.5 271 70.8
Nitab4.5_0003461g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 1.2e-94 350.9 281 63.7
Actinidia10244 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.4e-93 347.4 282 67.0
Rhsim07G0215800 Rhododendron simsii HOM05D002617 ORTHO05D006076 3.9e-93 345.9 278 66.9
Peaxi162Scf00479g00121 Petunia axillaris HOM05D002617 ORTHO05D006076 6.7e-93 345.1 275 64.4
Nitab4.5_0004487g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 2.0e-92 343.6 281 62.3
TAR629G1560 Trochodendron aralioides HOM05D002617 ORTHO05D006076 6.3e-91 338.6 287 62.0
Lj4A130T19 Lonicera japonica HOM05D002617 ORTHO05D006076 2.4e-90 336.7 283 65.0
Hma1.2p1_0550F.1_g177160 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 2.0e-89 333.6 284 64.8
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 7.7e-89 331.6 277 62.5
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 1.0e-88 331.3 277 62.5
CiPaw.03G005500 Carya illinoinensis HOM05D002617 ORTHO05D006076 6.5e-88 328.6 271 62.7
Potri.017G111300 Populus trichocarpa HOM05D002617 ORTHO05D006076 1.5e-87 327.4 277 61.7
Manes.02G066000 Manihot esculenta HOM05D002617 ORTHO05D006076 1.9e-87 327.0 314 58.0
CAN.G153.18 Capsicum annuum HOM05D002617 ORTHO05D006076 3.2e-87 326.2 270 61.9
Prupe.3G241000 Prunus persica HOM05D002617 ORTHO05D006076 1.6e-86 323.9 275 61.5
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 2.7e-86 323.2 277 61.7
TWI74G0354 Tripterygium wilfordii HOM05D002617 ORTHO05D006076 4.7e-86 322.4 273 61.9
Sopen03g009500 Solanum pennellii HOM05D002617 ORTHO05D000002 1.0e-85 321.2 275 60.4
DCAR_026269 Daucus carota HOM05D002617 ORTHO05D006076 1.8e-85 320.5 288 60.8
QL02p053118 Quercus lobata HOM05D002617 ORTHO05D006076 1.8e-85 320.5 270 62.2
Solyc03g045060.3 Solanum lycopersicum HOM05D002617 ORTHO05D006076 2.3e-85 320.1 275 60.4
Cpa.g.sc179.38 Carica papaya HOM05D002617 ORTHO05D006076 4.0e-85 319.3 285 60.4
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 4.0e-85 319.3 289 62.3
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 2.6e-84 316.6 307 57.0
Oeu032874.2 Olea europaea HOM05D002617 ORTHO05D006076 2.6e-84 316.6 281 58.0
TAR371G0417 Trochodendron aralioides HOM05D002617 ORTHO05D006076 3.3e-84 316.2 286 59.4
MD17G1073100 Malus domestica HOM05D002617 ORTHO05D006076 4.4e-84 315.8 292 58.6
RcHm_v2.0_Chr2g0163421 Rosa chinensis HOM05D002617 ORTHO05D006076 4.8e-83 312.4 298 56.0
MSTRG.23826 Avicennia marina HOM05D002617 ORTHO05D006076 3.1e-82 309.7 260 60.4
Atru.chr8.797 Acer truncatum HOM05D002617 ORTHO05D006076 5.3e-82 308.9 284 59.5
MD09G1082600 Malus domestica HOM05D002617 ORTHO05D006076 5.3e-82 308.9 280 58.2
Hma1.2p1_0136F.1_g062020 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 2.0e-81 307.0 280 61.4
Sabra04G0077200 Salix brachista HOM05D002617 ORTHO05D006076 7.7e-81 305.1 278 59.4
FAN14G4630 Fragaria x ananassa HOM05D002617 ORTHO05D006076 1.7e-80 303.9 295 55.6
FvH4_6g45480 Fragaria vesca HOM05D002617 ORTHO05D006076 3.8e-80 302.8 295 55.6
Cc07_g05010 Coffea canephora HOM05D002617 ORTHO05D006076 1.9e-79 300.4 276 58.3
Potri.004G104400 Populus trichocarpa HOM05D002617 ORTHO05D006076 2.7e-78 296.6 278 57.6
ClCG11G005280 Citrullus lanatus HOM05D002617 ORTHO05D006076 8.0e-78 295.0 270 60.7
Sabra17G0092600 Salix brachista HOM05D002617 ORTHO05D006076 1.4e-77 294.3 320 52.2
Duzib177G0627 Durio zibethinus HOM05D002617 ORTHO05D006076 3.0e-77 293.1 281 59.1
MELO3C022066.2 Cucumis melo HOM05D002617 ORTHO05D006076 8.8e-77 291.6 266 60.2
Glyma.13G047700 Glycine max HOM05D002617 ORTHO05D006076 1.5e-76 290.8 284 57.7
FAN02G4200 Fragaria x ananassa HOM05D002617 ORTHO05D006076 2.6e-76 290.0 328 51.2
CsaV3_5G039050 Cucumis sativus L. HOM05D002617 ORTHO05D006076 7.5e-76 288.5 266 59.4
Thecc.04G140400 Theobroma cacao HOM05D002617 ORTHO05D006076 9.8e-76 288.1 275 57.5
Glyma.19G040800 Glycine max HOM05D002617 ORTHO05D006076 1.4e-74 284.3 284 57.7
Sed0011770 Sechium edule HOM05D002617 ORTHO05D006076 1.4e-74 284.3 283 57.6
AUR62029876 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.8e-74 283.9 279 55.6
Lj2g0025982 Lotus japonicus HOM05D002617 ORTHO05D006076 1.8e-74 283.9 285 57.5
ECA232G1923 Erigeron canadensis HOM05D002617 ORTHO05D006076 3.1e-74 283.1 293 54.3
arahy.Tifrunner.gnm1.ann1.LH188B Arachis hypogaea HOM05D002617 ORTHO05D006076 1.6e-73 280.8 285 55.1
COL.COLO4_16207 Corchorus olitorius HOM05D002617 ORTHO05D006076 5.9e-73 278.9 276 56.2
AUR62025837 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.7e-72 277.3 279 55.2
CANSAT64G0391 Cannabis sativa HOM05D002617 ORTHO05D006076 2.3e-72 276.9 277 56.7
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 1.1e-71 274.6 296 52.4
Gohir.D13G172300 Gossypium hirsutum HOM05D002617 ORTHO05D006076 1.5e-71 274.2 284 54.9
Gorai.013G188400 Gossypium raimondii HOM05D002617 ORTHO05D006076 1.5e-71 274.2 284 54.9
HanXRQChr14g0439661 Helianthus annuus HOM05D002617 ORTHO05D006076 1.9e-71 273.9 294 53.7
arahy.Tifrunner.gnm1.ann1.B4TVCG Arachis hypogaea HOM05D002617 ORTHO05D006076 5.5e-71 272.3 286 53.8
Gohir.A13G161700 Gossypium hirsutum HOM05D002617 ORTHO05D006076 5.5e-71 272.3 284 54.6
Aqoxy3G00424 Aquilegia oxysepala HOM05D002617 ORTHO05D006076 2.1e-70 270.4 285 52.3
Eucgr.J01460 Eucalyptus grandis HOM05D002617 ORTHO05D006076 3.6e-70 269.6 275 51.6
Sc12g0007600 Simmondsia chinensis HOM05D002617 ORTHO05D006076 8.0e-70 268.5 276 55.1
VMungo0540G1549 Vigna mungo HOM05D002617 ORTHO05D006076 1.0e-69 268.1 281 55.5
SGA_v2.0_scaffold204G41654 Striga asiatica HOM05D002617 ORTHO05D006076 1.4e-69 267.7 275 53.8
GSVIVG01011977001 Vitis vinifera HOM05D002617 ORTHO05D006076 2.3e-69 266.9 340 47.6
Ca_26958_v3 Cicer arietinum L. HOM05D002617 ORTHO05D006076 5.2e-69 265.8 274 56.9
Duzib235G0774 Durio zibethinus HOM05D002617 ORTHO05D006076 5.2e-69 265.8 295 53.9
EL10Ac5g11460 Beta vulgaris HOM05D002617 ORTHO05D006076 1.7e-67 260.8 274 53.3
Phvul.L003037 Phaseolus vulgaris HOM05D002617 ORTHO05D006076 4.9e-67 259.2 290 54.1
Lalb_Chr02g0158361 Lupinus albus HOM05D002617 ORTHO05D006076 1.1e-66 258.1 284 54.9
unitig_736.g22255 Utricularia gibba HOM05D002617 ORTHO05D006076 1.1e-66 258.1 327 47.4
Medtr6g016990 Medicago truncatula HOM05D002617 ORTHO05D006076 2.4e-66 256.9 278 54.0
Lalb_Chr21g0317971 Lupinus albus HOM05D002617 ORTHO05D006076 1.2e-65 254.6 287 54.0
Psat0s1160g0440 Pisum sativum HOM05D002617 ORTHO05D006076 4.5e-65 252.7 285 51.9
HanXRQChr15g0489371 Helianthus annuus HOM05D002617 ORTHO05D006076 1.1e-63 248.1 210 59.5
vmacro04611 Vaccinium macrocarpon HOM05D002617 ORTHO05D006076 1.6e-62 244.2 218 63.3
ATR0598G067 Amborella trichopoda HOM05D002617 ORTHO05D006076 1.0e-61 241.5 278 51.8
Lsat_1_v5_gn_4_175880 Lactuca sativa HOM05D002617 ORTHO05D006076 2.3e-61 240.4 283 50.5
CDE03G0434 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 2.6e-60 236.9 244 54.5
PGR042G0381 Punica granatum HOM05D002617 ORTHO05D006076 3.4e-60 236.5 245 55.1
PSO017G2525 Papaver somniferum HOM05D002617 ORTHO05D006076 5.8e-60 235.7 318 45.0
PSO478G3319 Papaver somniferum HOM05D002617 ORTHO05D006076 9.8e-60 235.0 308 44.8
TPR.G9686 Trifolium pratense HOM05D002617 ORTHO05D006076 9.8e-60 235.0 194 63.9
Aa31LG9G16990 Aethionema arabicum HOM05D002617 ORTHO05D006076 2.2e-59 233.8 267 50.6
Oeu043861.1 Olea europaea HOM05D002617 ORTHO05D006076 1.1e-58 231.5 376 41.0
THA.LOC104805556 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 1.9e-58 230.7 255 52.9
THA.LOC104822697 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 4.1e-58 229.6 235 53.2
Carub.0002s1348 Capsella rubella HOM05D002617 ORTHO05D006076 7.0e-58 228.8 249 53.8
BcaB02g08001 Brassica carinata HOM05D002617 ORTHO05D006076 4.6e-57 226.1 272 49.3
A07p19790 Brassica napus HOM05D002617 ORTHO05D006076 8.6e-56 221.9 240 51.7
C06p18260 Brassica napus HOM05D000054 ORTHO05D006076 8.6e-56 221.9 240 51.2
BolC6t37041H Brassica oleracea HOM05D002617 ORTHO05D006076 8.6e-56 221.9 240 51.2
BraA07t29680Z Brassica rapa HOM05D002617 ORTHO05D006076 8.6e-56 221.9 240 51.7
BcaC08g44397 Brassica carinata HOM05D002617 ORTHO05D006076 1.5e-55 221.1 240 51.2
DCAR_026709 Daucus carota HOM05D002617 ORTHO05D006076 1.9e-55 220.7 269 49.8
AL2G25720 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 3.3e-55 219.9 183 62.8
EL10Ac6g14526 Beta vulgaris HOM05D002617 ORTHO05D006076 2.1e-54 217.2 249 51.4
Sp7g03340 Schrenkiella parvula HOM05D002617 ORTHO05D006076 2.8e-54 216.9 193 57.5
Os06g0495700 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D006076 3.6e-54 216.5 275 48.0
AT1G67210 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 1.4e-53 214.5 198 56.6
AT5G38600 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 4.0e-53 213.0 262 50.0
Thhalv10018682m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 4.0e-53 213.0 268 48.1
Sc11g0002970 Simmondsia chinensis HOM05D002617 ORTHO05D006076 8.9e-53 211.8 246 49.6
HPP92_011591 Vanilla planifolia HOM05D002617 ORTHO05D006076 1.5e-52 211.1 258 49.6
Carub.0007s3725 Capsella rubella HOM05D002617 ORTHO05D006076 2.0e-52 210.7 260 50.4
Hund05776 Selenicereus undatus HOM05D002617 ORTHO05D006076 2.6e-52 210.3 268 47.8
Zm00001eb182330 Zea mays HOM05D002617 ORTHO05D006076 2.6e-52 210.3 283 45.6
Thhalv10027714m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 4.4e-52 209.5 251 49.0
Lj3A1022T61 Lonicera japonica HOM05D002617 ORTHO05D006076 7.5e-52 208.8 221 53.8
AUR62002941 Chenopodium quinoa HOM05D002617 ORTHO05D006076 9.8e-52 208.4 218 51.8
AUR62007748 Chenopodium quinoa HOM05D002617 ORTHO05D006076 4.9e-51 206.1 204 54.9
AL7G51930 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 3.2e-50 203.4 254 49.6
CARHR214050 Cardamine hirsuta HOM05D002617 ORTHO05D006076 9.2e-50 201.8 262 49.6
Dinv33922 Davidia involucrata HOM05D002617 ORTHO05D006076 9.2e-50 201.8 192 62.0
BcaB05g24247 Brassica carinata HOM05D002617 ORTHO05D006076 6.0e-49 199.1 177 58.8
Lsat_1_v5_gn_8_37540 Lactuca sativa HOM05D002617 ORTHO05D006076 5.1e-48 196.1 169 58.0
Ah.03g138020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 1.5e-47 194.5 250 45.6
BraA02t06470Z Brassica rapa HOM05D002617 ORTHO05D006076 1.6e-46 191.0 259 45.6
BcaC03g14816 Brassica carinata HOM05D002617 ORTHO05D006076 2.1e-46 190.7 180 55.0
BolC2t08421H Brassica oleracea HOM05D002617 ORTHO05D006076 2.1e-46 190.7 180 55.0
CARHR059670 Cardamine hirsuta HOM05D002617 ORTHO05D006076 3.6e-46 189.9 185 55.1
A02p14070 Brassica napus HOM05D002617 ORTHO05D006076 4.7e-46 189.5 254 45.7
C02p22680 Brassica napus HOM05D002617 ORTHO05D006076 8.1e-46 188.7 258 44.6
Aa31LG2G3590 Aethionema arabicum HOM05D002617 ORTHO05D006076 1.1e-45 188.3 252 45.6
Sp5g22140 Schrenkiella parvula HOM05D002617 ORTHO05D006076 1.4e-45 188.0 172 57.6
Mapoly0126s0021 Marchantia polymorpha HOM05D002617 ORTHO05D006076 1.3e-43 181.4 260 42.3
SMO197G0066 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 1.9e-39 167.5 167 52.7
SMO005G0008 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 3.3e-39 166.8 200 46.5
FAN05G1346 Fragaria x ananassa HOM05D002617 ORTHO05D006076 2.4e-37 160.6 137 59.9
Glyma.19G043901 Glycine max HOM05D002617 ORTHO05D006076 1.7e-35 154.5 188 51.1
Actinidia29638 Actinidia chinensis HOM05D002617 ORTHO05D006076 2.2e-35 154.1 87 82.8
PGSC0003DMG400003361 Solanum tuberosum HOM05D002617 ORTHO05D006076 3.2e-34 150.2 167 50.3
Actinidia13004 Actinidia chinensis HOM05D002617 ORTHO05D006076 7.8e-33 145.6 83 81.9
CBR_g21963 Chara braunii HOM05D002617 ORTHO05D006076 6.6e-32 142.5 191 41.4
FAN09G0965 Fragaria x ananassa HOM05D002617 ORTHO05D006076 1.5e-28 131.3 84 75.0
SGA_v2.0_scaffold150G36614 Striga asiatica HOM05D002617 ORTHO05D006076 1.0e-24 118.6 148 48.6
AagrBONN_evm.TU.Sc2ySwM_344.4970 Anthoceros agrestis HOM05D002617 ORTHO05D006076 8.7e-16 89.0 78 52.6
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 8.7e-16 89.0 41 95.1
Ah.02g115020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 4.0e-13 80.1 173 35.3


User provided reference genes

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