Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 7.8e-183 643.7 322 100.0
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 1.4e-147 526.6 334 80.8
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 6.9e-147 524.2 324 81.2
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 5.3e-139 498.0 333 76.3
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 5.3e-131 471.5 454 59.5
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 3.9e-126 455.3 333 72.4
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 1.3e-121 440.3 253 84.6
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 2.5e-120 436.0 323 70.3
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 3.2e-120 435.6 325 68.0
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 3.2e-120 435.6 318 70.4
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 4.2e-120 435.3 284 76.1
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 4.2e-120 435.3 284 76.1
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 4.2e-120 435.3 258 81.0
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 7.2e-120 434.5 252 84.1
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 1.6e-119 433.3 322 70.8
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 1.6e-119 433.3 321 69.5
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 1.6e-119 433.3 256 80.9
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 1.6e-119 433.3 318 69.5
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 2.7e-119 432.6 324 70.4
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 3.5e-119 432.2 289 74.4
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 3.5e-119 432.2 240 85.4
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 7.9e-119 431.0 326 68.7
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 7.9e-119 431.0 318 68.9
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 1.8e-118 429.9 322 68.3
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 2.3e-118 429.5 318 69.2
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 5.1e-118 428.3 245 83.7
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 5.1e-118 428.3 247 82.2
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 8.7e-118 427.6 242 85.1
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 8.7e-118 427.6 329 68.1
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.5e-117 426.8 318 68.9
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 4.3e-117 425.2 322 65.5
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 4.3e-117 425.2 242 83.9
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 5.7e-117 424.9 244 83.6
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 5.7e-117 424.9 293 72.0
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 9.7e-117 424.1 254 80.7
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 9.7e-117 424.1 318 68.2
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 9.7e-117 424.1 323 65.0
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 9.7e-117 424.1 246 82.9
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 1.3e-116 423.7 254 80.7
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 1.3e-116 423.7 327 68.8
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 1.6e-116 423.3 289 74.0
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 1.6e-116 423.3 256 80.5
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 2.8e-116 422.5 285 73.0
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 3.7e-116 422.2 325 66.8
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 4.8e-116 421.8 245 82.4
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 4.8e-116 421.8 269 77.3
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 1.1e-115 420.6 249 81.1
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 1.1e-115 420.6 293 73.0
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 1.4e-115 420.2 255 79.6
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 3.1e-115 419.1 285 70.9
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 4.1e-115 418.7 290 72.1
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 5.3e-115 418.3 247 80.6
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 5.3e-115 418.3 247 80.6
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 5.3e-115 418.3 244 81.1
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 1.2e-114 417.2 244 81.6
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.5e-114 416.8 247 80.2
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 2.0e-114 416.4 260 75.4
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 2.6e-114 416.0 245 79.6
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 4.5e-114 415.2 251 78.1
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 7.7e-114 414.5 271 73.1
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 7.7e-114 414.5 243 81.9
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 7.7e-114 414.5 244 81.6
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 1.7e-113 413.3 260 74.2
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 1.7e-113 413.3 265 74.0
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 2.9e-113 412.5 270 73.3
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 2.9e-113 412.5 263 76.4
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 5.0e-113 411.8 270 73.3
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 5.0e-113 411.8 241 80.5
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 1.4e-112 410.2 270 72.6
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.9e-112 409.8 261 77.8
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 2.5e-112 409.5 243 79.8
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 3.2e-112 409.1 299 67.6
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 4.2e-112 408.7 330 65.8
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 9.4e-112 407.5 286 68.9
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 9.4e-112 407.5 299 67.6
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 4.6e-111 405.2 242 80.2
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 1.8e-110 403.3 315 63.8
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 1.8e-110 403.3 289 68.9
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 3.9e-110 402.1 247 77.7
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 5.1e-110 401.7 244 77.5
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.1e-109 400.6 252 75.8
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 2.5e-109 399.4 325 62.5
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 2.5e-109 399.4 290 70.0
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 1.3e-108 397.1 267 72.3
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.7e-108 396.7 321 60.4
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 1.7e-108 396.7 247 76.1
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 8.2e-108 394.4 246 75.2
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 4.1e-107 392.1 260 74.6
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 5.3e-107 391.7 244 75.0
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 1.2e-106 390.6 246 74.8
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.0e-105 387.5 265 70.9
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 5.5e-104 381.7 289 65.7
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 7.9e-103 377.9 289 66.8
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 1.4e-102 377.1 363 56.7
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 5.1e-102 375.2 286 66.8
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 8.8e-102 374.4 286 68.9
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 7.4e-101 371.3 249 76.7
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 7.0e-99 364.8 212 81.6
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 2.9e-97 359.4 247 70.0
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 5.0e-97 358.6 262 68.3
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.9e-96 356.7 333 58.9
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 1.2e-95 354.0 247 67.2
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 2.1e-95 353.2 319 58.6
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 2.3e-94 349.7 214 75.2
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 2.8e-92 342.8 216 78.7
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 4.8e-92 342.0 323 59.8
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 1.3e-89 334.0 261 59.8
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 4.2e-88 328.9 247 67.6
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 8.0e-87 324.7 238 68.5
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 1.3e-81 307.4 247 63.2
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 3.4e-77 292.7 216 64.4
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.3e-76 290.8 231 63.6
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 4.5e-74 282.3 167 82.6
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 9.5e-72 274.6 245 54.3
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 1.8e-67 260.4 206 68.0
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 2.7e-66 256.5 244 51.2
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 5.9e-66 255.4 159 76.1
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 1.7e-65 253.8 179 69.8
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 3.0e-65 253.1 145 86.2
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 1.1e-64 251.1 251 53.0
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 3.3e-64 249.6 224 59.4
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 9.5e-64 248.1 167 70.7
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 2.9e-60 236.5 270 53.0
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 2.4e-59 233.4 192 64.1
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 2.8e-55 219.9 242 41.7
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.6e-55 219.5 137 77.4
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 6.8e-54 215.3 130 83.8
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 7.5e-53 211.8 161 65.8
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 9.8e-53 211.5 137 72.3
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.9e-51 207.2 171 62.0
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 4.6e-50 202.6 138 73.9
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 6.6e-49 198.7 238 44.1
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 1.1e-48 198.0 133 69.2
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 9.5e-48 194.9 178 58.4
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 1.2e-47 194.5 112 79.5
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.2e-45 188.0 193 54.9
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 6.4e-44 182.2 110 80.9
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 2.4e-43 180.3 136 65.4
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 2.4e-43 180.3 136 65.4
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 5.4e-43 179.1 111 71.2
CSS0011310 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 5.4e-43 179.1 93 98.9
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 1.7e-41 174.1 148 62.8
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 8.1e-39 165.2 164 54.3
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 8.1e-39 165.2 247 36.8
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 6.9e-38 162.2 92 81.5
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 3.8e-36 156.4 222 41.0
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 6.4e-36 155.6 99 70.7
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 1.0e-33 148.3 80 85.0
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 8.7e-33 145.2 214 39.3
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 8.7e-33 145.2 82 79.3
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 4.8e-31 139.4 76 82.9
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 8.1e-31 138.7 75 81.3
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.4e-27 127.9 63 95.2
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.9e-27 127.5 56 100.0
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 2.7e-26 123.6 66 81.8
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 6.2e-23 112.5 246 30.9
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 4.0e-22 109.8 88 62.5
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 9.0e-22 108.6 128 53.1
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 4.6e-18 96.3 65 70.8
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.0e-17 95.1 133 41.4
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 5.1e-17 92.8 49 83.7
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 1.4e-14 84.7 48 75.0
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 9.0e-14 82.0 61 55.7
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 3.8e-12 76.6 102 42.2
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 1.9e-08 64.3 45 62.2
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 5.7e-08 62.8 75 46.7


User provided reference genes

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