Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 1.1e-93 346.7 181 100.0
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 2.0e-63 246.1 175 77.7
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 2.6e-63 245.7 185 74.1
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 2.2e-62 242.7 174 77.6
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 6.1e-60 234.6 179 70.9
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 8.0e-60 234.2 182 70.9
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.3e-59 232.6 180 70.0
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 2.0e-58 229.6 181 67.4
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 8.3e-57 224.2 181 68.5
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 8.3e-57 224.2 185 65.9
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 1.1e-56 223.8 177 69.5
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 1.4e-56 223.4 192 63.0
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 1.4e-56 223.4 172 69.2
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 5.3e-56 221.5 177 68.4
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 5.3e-56 221.5 176 67.6
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 1.9e-53 213.0 183 65.6
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 2.5e-53 212.6 173 68.2
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 3.2e-53 212.2 178 65.2
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 4.2e-53 211.8 176 64.8
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 7.2e-53 211.1 175 66.9
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 1.6e-52 209.9 178 66.9
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 1.6e-52 209.9 151 70.2
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 2.1e-52 209.5 174 65.5
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 2.7e-52 209.1 176 64.2
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 6.1e-52 208.0 172 65.1
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 6.1e-52 208.0 178 65.2
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 3.0e-51 205.7 176 63.1
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 4.0e-51 205.3 183 64.5
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 6.8e-51 204.5 179 64.2
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 6.8e-51 204.5 180 61.7
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 6.8e-51 204.5 180 61.1
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 8.8e-51 204.1 151 72.2
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 8.8e-51 204.1 182 63.7
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 1.2e-50 203.8 184 61.4
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 1.5e-50 203.4 175 65.1
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 1.5e-50 203.4 175 65.1
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 2.0e-50 203.0 181 63.5
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 5.7e-50 201.4 172 63.4
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 7.5e-50 201.1 181 64.1
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 9.8e-50 200.7 170 63.5
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.3e-49 200.3 183 62.3
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 1.3e-49 200.3 179 60.9
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 1.7e-49 199.9 181 63.0
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 2.2e-49 199.5 170 65.9
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 2.2e-49 199.5 175 62.9
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 2.8e-49 199.1 177 62.1
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 2.8e-49 199.1 178 62.9
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 2.8e-49 199.1 178 62.4
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 2.8e-49 199.1 181 63.0
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 3.7e-49 198.7 170 64.1
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 4.8e-49 198.4 181 62.4
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 4.8e-49 198.4 181 62.4
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 6.3e-49 198.0 168 63.7
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 1.4e-48 196.8 172 63.4
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 1.8e-48 196.4 146 69.9
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 4.1e-48 195.3 185 58.9
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 1.2e-47 193.7 175 62.9
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.2e-47 193.7 177 62.1
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 2.7e-47 192.6 156 65.4
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 2.7e-47 192.6 177 62.1
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 4.5e-47 191.8 167 62.3
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 1.7e-46 189.9 159 64.2
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 1.7e-46 189.9 242 49.2
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 1.7e-46 189.9 168 61.9
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 2.9e-46 189.1 177 60.5
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 2.9e-46 189.1 158 63.3
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 3.8e-46 188.7 179 59.2
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 3.8e-46 188.7 139 68.3
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 8.6e-46 187.6 158 65.8
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 1.5e-45 186.8 178 59.6
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 1.9e-45 186.4 179 59.2
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 7.2e-45 184.5 185 56.2
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 9.5e-45 184.1 172 58.7
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 1.2e-44 183.7 208 52.9
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 4.7e-44 181.8 171 55.0
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 4.7e-44 181.8 176 57.4
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 1.4e-43 180.3 159 57.2
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 1.4e-43 180.3 159 57.2
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 1.4e-43 180.3 177 54.2
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 3.0e-43 179.1 170 54.1
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 3.0e-43 179.1 177 52.5
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 4.0e-43 178.7 169 55.0
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 6.8e-43 177.9 170 54.1
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 8.9e-43 177.6 151 58.9
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 8.9e-43 177.6 176 52.8
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 8.9e-43 177.6 148 64.2
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 1.2e-42 177.2 172 55.8
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 1.2e-42 177.2 174 54.0
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 1.2e-42 177.2 170 60.0
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 1.5e-42 176.8 279 43.0
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 1.5e-42 176.8 180 56.1
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 2.6e-42 176.0 180 55.6
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 5.7e-42 174.9 181 51.9
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 5.7e-42 174.9 174 54.0
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 1.3e-41 173.7 155 59.4
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 1.3e-41 173.7 230 48.3
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 1.3e-41 173.7 177 57.6
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 2.8e-41 172.6 174 51.7
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 2.8e-41 172.6 174 52.3
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 2.8e-41 172.6 174 52.3
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 3.7e-41 172.2 174 51.7
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 6.3e-41 171.4 168 56.5
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 1.2e-39 167.2 178 56.7
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 1.2e-39 167.2 121 71.9
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 1.2e-39 167.2 118 68.6
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 4.5e-39 165.2 146 56.8
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 6.6e-38 161.4 152 58.6
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 1.1e-37 160.6 179 50.3
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 1.5e-37 160.2 122 68.0
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 2.5e-37 159.5 274 41.2
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 3.3e-37 159.1 120 67.5
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 4.3e-37 158.7 146 58.2
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 9.5e-37 157.5 154 61.7
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 2.6e-34 149.4 139 54.0
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 1.9e-32 143.3 150 53.3
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 4.1e-32 142.1 177 45.2
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 9.2e-32 141.0 178 49.4
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 1.0e-30 137.5 115 64.3
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 1.7e-30 136.7 124 53.2
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 5.0e-30 135.2 151 48.3
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 6.6e-30 134.8 117 55.6
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 3.3e-29 132.5 100 68.0
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 4.3e-29 132.1 151 45.0
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 4.3e-29 132.1 151 45.0
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 1.8e-27 126.7 160 43.1
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 1.5e-26 123.6 143 46.9
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 1.5e-26 123.6 129 53.5
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 1.5e-26 123.6 129 53.5
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 4.4e-26 122.1 156 43.6
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 2.4e-24 116.3 119 58.0
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 2.7e-23 112.8 171 39.2
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 2.9e-17 92.8 103 47.6
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 1.9e-16 90.1 87 57.5
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 1.2e-15 87.4 121 45.5
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 1.2e-15 87.4 168 36.3
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 8.1e-12 74.7 102 44.1
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 4.0e-11 72.4 101 43.6
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 4.0e-11 72.4 101 44.6
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 5.2e-11 72.0 100 45.0
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 5.8e-10 68.6 108 41.7
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 5.8e-10 68.6 108 41.7
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 5.8e-10 68.6 101 41.6
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 5.4e-08 62.0 48 62.5
BcaB04g18128 Brassica carinata HOM05D005090 ORTHO05D006142 1.6e-07 60.5 43 67.4
CDE04G2695 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 4.6e-07 58.9 53 58.5
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 3.9e-06 55.8 58 53.4


User provided reference genes

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