Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005409 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 2.1e-266 921.8 450 100.0
vmacro16939 Vaccinium macrocarpon HOM05D004738 ORTHO05D006439 2.7e-218 761.9 452 82.5
Rhsim12G0195800 Rhododendron simsii HOM05D004738 ORTHO05D006439 2.3e-217 758.8 459 82.1
Actinidia08828 Actinidia chinensis HOM05D004738 ORTHO05D006439 4.2e-211 738.0 448 82.4
Dinv30535 Davidia involucrata HOM05D004738 ORTHO05D006439 4.0e-209 731.5 453 80.6
Oeu022417.1 Olea europaea HOM05D004738 ORTHO05D006439 2.9e-188 662.1 451 72.7
ECA247G3808 Erigeron canadensis HOM05D004738 ORTHO05D006439 1.5e-187 659.8 392 80.6
QL05p025470 Quercus lobata HOM05D004738 ORTHO05D006439 2.5e-187 659.1 378 82.3
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 4.7e-186 654.8 391 79.5
CiPaw.02G152800 Carya illinoinensis HOM05D004738 ORTHO05D006439 1.0e-185 653.7 447 72.3
Prupe.3G075100 Prunus persica HOM05D004738 ORTHO05D006439 1.4e-185 653.3 465 72.5
Nn2g11846 Nelumbo nucifera HOM05D004738 ORTHO05D006439 3.0e-185 652.1 469 71.2
Nitab4.5_0005784g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 6.8e-185 651.0 459 72.1
Nn8g39296 Nelumbo nucifera HOM05D004738 ORTHO05D006439 8.9e-185 650.6 467 70.9
Sabra03G0032700 Salix brachista HOM05D004738 ORTHO05D006439 1.2e-184 650.2 461 71.4
Potri.003G058500 Populus trichocarpa HOM05D004738 ORTHO05D006439 9.8e-184 647.1 386 79.8
MSTRG.11096 Avicennia marina HOM05D004738 ORTHO05D006439 1.3e-183 646.7 458 71.0
Cc04_g03640 Coffea canephora HOM05D004738 ORTHO05D006439 1.7e-183 646.4 456 71.1
SGA_v2.0_scaffold37G14802 Striga asiatica HOM05D004738 ORTHO05D006439 2.4e-182 642.5 458 71.0
MD17G1198400 Malus domestica HOM05D004738 ORTHO05D006439 3.2e-182 642.1 458 71.2
Haze_16464 Corylus avellana HOM05D004738 ORTHO05D006439 4.1e-182 641.7 478 70.3
Nitab4.5_0002424g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 7.0e-182 641.0 480 69.6
Thecc.06G081700 Theobroma cacao HOM05D004738 ORTHO05D006439 7.0e-182 641.0 442 71.9
arahy.Tifrunner.gnm1.ann1.2F1L5Z Arachis hypogaea HOM05D004738 ORTHO05D006439 1.6e-181 639.8 445 73.0
Lsat_1_v5_gn_1_34140 Lactuca sativa HOM05D004738 ORTHO05D006439 1.6e-181 639.8 457 70.9
FAN05G5687 Fragaria x ananassa HOM05D004738 ORTHO05D006439 2.0e-181 639.4 460 71.7
HanXRQChr04g0096441 Helianthus annuus HOM05D004738 ORTHO05D006439 2.0e-181 639.4 380 79.5
GSVIVG01017163001 Vitis vinifera HOM05D004738 ORTHO05D006439 7.8e-181 637.5 389 78.9
CANSAT56G4214 Cannabis sativa HOM05D004738 ORTHO05D006439 3.0e-180 635.6 386 79.0
Cfa002046 Carpinus fangiana HOM05D004738 ORTHO05D006439 3.0e-180 635.6 455 72.5
DCAR_026302 Daucus carota HOM05D004738 ORTHO05D006439 6.6e-180 634.4 454 68.9
FAN02G1331 Fragaria x ananassa HOM05D004738 ORTHO05D006439 6.6e-180 634.4 460 71.5
PGSC0003DMG400002559 Solanum tuberosum HOM05D004738 ORTHO05D006439 1.5e-179 633.3 460 70.4
Duzib235G1168 Durio zibethinus HOM05D004738 ORTHO05D006439 1.9e-179 632.9 413 76.8
RcHm_v2.0_Chr2g0137281 Rosa chinensis HOM05D004738 ORTHO05D006439 1.9e-179 632.9 465 68.8
FAN09G3531 Fragaria x ananassa HOM05D004738 ORTHO05D006439 4.3e-179 631.7 463 70.6
FvH4_6g30840 Fragaria vesca HOM05D004738 ORTHO05D006439 9.5e-179 630.6 377 80.4
VMungo1080G0347 Vigna mungo HOM05D004738 ORTHO05D006439 2.1e-178 629.4 450 70.9
HanXRQChr02g0032631 Helianthus annuus HOM05D004738 ORTHO05D006439 2.8e-178 629.0 450 69.8
Manes.04G120700 Manihot esculenta HOM05D004738 ORTHO05D006439 4.7e-178 628.2 459 69.3
Medtr2g102510 Medicago truncatula HOM05D004738 ORTHO05D006439 6.2e-178 627.9 446 70.6
Eucgr.F02574 Eucalyptus grandis HOM05D004738 ORTHO05D006439 1.1e-177 627.1 449 70.4
Glyma.15G012500 Glycine max HOM05D004738 ORTHO05D006439 1.1e-177 627.1 450 70.0
Lj9A505T66 Lonicera japonica HOM05D004738 ORTHO05D006439 1.1e-177 627.1 373 80.4
Gorai.009G132100 Gossypium raimondii HOM05D004738 ORTHO05D006439 1.4e-177 626.7 375 80.5
Sopen03g039310 Solanum pennellii HOM05D004738 ORTHO05D006439 1.8e-177 626.3 457 68.7
Gohir.A02G122900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 3.1e-177 625.5 375 79.5
Sopen00g008920 Solanum pennellii HOM05D004738 ORTHO05D006439 4.0e-177 625.2 456 68.6
Solyc03g120430.3 Solanum lycopersicum HOM05D004738 ORTHO05D006439 8.9e-177 624.0 456 68.4
FAN14G4632 Fragaria x ananassa HOM05D004738 ORTHO05D006439 2.0e-176 622.9 472 69.3
Gorai.002G058000 Gossypium raimondii HOM05D004738 ORTHO05D006439 4.4e-176 621.7 408 74.3
Gohir.D03G073500 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.3e-175 620.2 408 74.3
Migut.I00837 Erythranthe guttata HOM05D004738 ORTHO05D006439 2.9e-175 619.0 463 68.3
CsaV3_7G032950 Cucumis sativus L. HOM05D004738 ORTHO05D006439 3.7e-175 618.6 405 74.6
COL.COLO4_02957 Corchorus olitorius HOM05D004738 ORTHO05D006439 4.9e-175 618.2 360 81.7
Cpa.g.sc10.174 Carica papaya HOM05D004738 ORTHO05D006439 6.4e-175 617.8 362 80.7
Gohir.A05G127000 Gossypium hirsutum HOM05D004738 ORTHO05D006439 6.4e-175 617.8 392 77.0
Peaxi162Scf00015g00234 Petunia axillaris HOM05D004738 ORTHO05D006439 8.3e-175 617.5 377 78.2
arahy.Tifrunner.gnm1.ann1.S5ELWT Arachis hypogaea HOM05D004738 ORTHO05D006439 3.2e-174 615.5 392 77.6
Sc12g0009100 Simmondsia chinensis HOM05D004738 ORTHO05D006439 3.2e-174 615.5 408 74.3
Aqoxy7G03780 Aquilegia oxysepala HOM05D004738 ORTHO05D006439 7.0e-174 614.4 389 76.3
Lj3g0008822 Lotus japonicus HOM05D004738 ORTHO05D006439 1.6e-173 613.2 450 69.1
TWI12G0818 Tripterygium wilfordii HOM05D004738 ORTHO05D006439 4.6e-173 611.7 466 66.7
MELO3C023371.2 Cucumis melo HOM05D004738 ORTHO05D006439 7.8e-173 610.9 443 70.7
Lalb_Chr14g0373571 Lupinus albus HOM05D004738 ORTHO05D006439 7.8e-173 610.9 453 67.5
Glyma.13G361400 Glycine max HOM05D004738 ORTHO05D006439 3.9e-172 608.6 449 68.4
Lalb_Chr22g0351141 Lupinus albus HOM05D004738 ORTHO05D006439 6.6e-172 607.8 457 67.2
Potri.001G177300 Populus trichocarpa HOM05D004738 ORTHO05D006439 6.6e-172 607.8 392 75.8
Hund06597 Selenicereus undatus HOM05D004738 ORTHO05D006439 2.5e-171 605.9 446 68.2
Sp5g35430 Schrenkiella parvula HOM05D004738 ORTHO05D006439 3.3e-171 605.5 426 70.2
Ciclev10025569m.g Citrus clementina HOM05D004738 ORTHO05D006439 4.3e-171 605.1 466 67.8
Sed0002572 Sechium edule HOM05D004738 ORTHO05D006439 4.3e-171 605.1 404 73.8
Phvul.005G173200 Phaseolus vulgaris HOM05D004738 ORTHO05D006439 1.6e-170 603.2 445 67.6
TPR.G37250 Trifolium pratense HOM05D004738 ORTHO05D006439 2.8e-170 602.4 448 66.3
Ca_01103_v3 Cicer arietinum L. HOM05D004738 ORTHO05D006439 6.2e-170 601.3 386 74.9
AL2G41120 Arabidopsis lyrata HOM05D004738 ORTHO05D006439 1.1e-169 600.5 419 71.4
CSS0037007 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 1.8e-169 599.7 362 80.9
CAN.G438.45 Capsicum annuum HOM05D004738 ORTHO05D006439 1.8e-169 599.7 459 66.9
Thhalv10018540m.g Eutrema salsugineum HOM05D004738 ORTHO05D006439 3.1e-169 599.0 393 74.0
Lj3g0001201 Lotus japonicus HOM05D004738 ORTHO05D006439 2.0e-168 596.3 376 75.8
MBI01_g13569_MAGBIO Magnolia biondii HOM05D004738 ORTHO05D006439 2.0e-168 596.3 407 70.0
CARHR074130 Cardamine hirsuta HOM05D004738 ORTHO05D006439 3.4e-168 595.5 394 74.4
C02p37360 Brassica napus HOM05D004738 ORTHO05D006439 2.2e-167 592.8 393 73.0
THA.LOC104808210 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 2.2e-167 592.8 390 74.1
BolC2t09746H Brassica oleracea HOM05D004738 ORTHO05D006439 6.4e-167 591.3 393 73.0
BraA07t30308Z Brassica rapa HOM05D004738 ORTHO05D006439 6.4e-167 591.3 413 71.4
Carub.0002s2719 Capsella rubella HOM05D004738 ORTHO05D006439 8.3e-167 590.9 399 72.9
A07p26650 Brassica napus HOM05D004738 ORTHO05D006439 1.1e-166 590.5 395 73.7
BcaC08g45309 Brassica carinata HOM05D004738 ORTHO05D006439 1.4e-166 590.1 395 73.4
C06p29130 Brassica napus HOM05D004738 ORTHO05D006439 1.4e-166 590.1 395 73.4
BolC6t38077H Brassica oleracea HOM05D004738 ORTHO05D006439 1.4e-166 590.1 395 73.4
PGR102G2550 Punica granatum HOM05D004738 ORTHO05D006439 1.4e-166 590.1 349 78.2
BcaB02g07276 Brassica carinata HOM05D004738 ORTHO05D006439 5.4e-166 588.2 384 74.2
BraA02t07352Z Brassica rapa HOM05D004738 ORTHO05D006439 5.4e-166 588.2 393 72.5
Aa31LG4G650 Aethionema arabicum HOM05D004738 ORTHO05D006439 7.1e-166 587.8 375 74.9
BcaC08g47585 Brassica carinata HOM05D004738 ORTHO05D006439 7.1e-166 587.8 392 72.7
BraA07t32032Z Brassica rapa HOM05D004738 ORTHO05D006439 7.1e-166 587.8 377 74.8
AUR62011604 Chenopodium quinoa HOM05D004738 ORTHO05D006439 7.1e-166 587.8 444 67.8
BcaB02g08689 Brassica carinata HOM05D004738 ORTHO05D006439 1.2e-165 587.0 392 72.4
A07p45280 Brassica napus HOM05D004738 ORTHO05D006439 2.7e-165 585.9 377 74.8
C06p54140 Brassica napus HOM05D004738 ORTHO05D006439 2.7e-165 585.9 377 74.5
A02p23600 Brassica napus HOM05D004738 ORTHO05D006439 3.5e-165 585.5 424 69.1
AUR62016418 Chenopodium quinoa HOM05D004738 ORTHO05D006439 4.6e-165 585.1 454 67.0
EL10Ac9g21974 Beta vulgaris HOM05D004738 ORTHO05D006439 6.0e-165 584.7 432 68.5
BcaB05g25272 Brassica carinata HOM05D004738 ORTHO05D006439 7.8e-165 584.3 376 74.5
THA.LOC104812476 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 3.0e-164 582.4 426 68.3
PSO210G3793 Papaver somniferum HOM05D004738 ORTHO05D006439 6.6e-164 581.3 473 63.8
PSO210G6241 Papaver somniferum HOM05D004738 ORTHO05D006439 6.2e-162 574.7 471 63.3
BolC6t40426H Brassica oleracea HOM05D004738 ORTHO05D006439 5.2e-161 571.6 423 67.4
CDE06G1313 Ceratophyllum demersum HOM05D004738 ORTHO05D006439 8.9e-161 570.9 348 76.4
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 4.2e-158 562.0 357 76.5
Duzib192G0909 Durio zibethinus HOM05D004738 ORTHO05D006439 1.6e-157 560.1 350 78.0
ClCG09G002360 Citrullus lanatus HOM05D004738 ORTHO05D006439 3.5e-157 558.9 396 70.5
Os01g0682500 Oryza sativa ssp. japonica HOM05D004738 ORTHO05D006439 6.6e-156 554.7 364 71.7
Gohir.D05G127900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 5.6e-155 551.6 318 83.6
Zm00001eb267390 Zea mays HOM05D004738 ORTHO05D006439 3.2e-150 535.8 340 72.4
ATR0083G024 Amborella trichopoda HOM05D004738 ORTHO05D006439 4.2e-150 535.4 374 67.6
Zm00001eb156570 Zea mays HOM05D004738 ORTHO05D006439 6.9e-145 518.1 352 69.6
Nn2g11397 Nelumbo nucifera HOM05D004738 ORTHO05D006439 5.4e-142 508.4 356 68.5
Oeu033460.1 Olea europaea HOM05D004738 ORTHO05D006439 1.8e-137 493.4 330 72.4
unitig_21.g20511 Utricularia gibba HOM05D004738 ORTHO05D006439 9.0e-137 491.1 380 65.3
HPP92_011481 Vanilla planifolia HOM05D004738 ORTHO05D006439 1.4e-134 483.8 343 70.3
AT1G80380 Arabidopsis thaliana HOM05D004738 ORTHO05D006439 9.6e-131 471.1 279 79.2
SHI09688 Sapria himalayana HOM05D004738 ORTHO05D006439 8.4e-127 458.0 342 64.9
Pp3c18_16070 Physcomitrium patens HOM05D004738 ORTHO05D006439 2.7e-125 453.0 330 63.9
HPP92_011544 Vanilla planifolia HOM05D004738 ORTHO05D006439 3.0e-124 449.5 311 69.8
SEGI_20298 Sequoiadendron giganteum HOM05D004738 ORTHO05D006439 1.5e-120 437.2 368 56.5
AagrBONN_evm.TU.Sc2ySwM_368.190 Anthoceros agrestis HOM05D004738 ORTHO05D006439 3.6e-117 426.0 334 61.4
Psat5g299520 Pisum sativum HOM05D004738 ORTHO05D006439 4.6e-117 425.6 275 74.9
SMO147G0425 Selaginella moellendorffii HOM05D004738 ORTHO05D006439 9.7e-115 417.9 337 57.3
BcaC03g15976 Brassica carinata HOM05D004738 ORTHO05D006439 6.3e-114 415.2 247 81.0
Mapoly0010s0209 Marchantia polymorpha HOM05D004738 ORTHO05D006439 9.7e-107 391.3 331 55.9
CBR_g49861 Chara braunii HOM05D004738 ORTHO05D006439 2.0e-104 383.6 331 53.5
arahy.Tifrunner.gnm1.ann1.7R7SHJ Arachis hypogaea HOM05D004738 ORTHO05D006439 5.5e-94 349.0 280 65.0
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 6.3e-90 335.5 302 61.3
Cre12.g542300 Chlamydomonas reinhardtii HOM05D004738 ORTHO05D006439 2.0e-88 330.5 346 46.5
MCO11G539 Micromonas commoda HOM05D004738 ORTHO05D006439 2.4e-81 307.0 349 44.1
PRCOL_00005044 Prasinoderma coloniale HOM05D004738 ORTHO05D006439 1.3e-74 284.6 328 47.0
Dinv38066 Davidia involucrata HOM05D004738 ORTHO05D006439 3.1e-68 263.5 146 86.3
Hund00584 Selenicereus undatus HOM05D004738 ORTHO05D006439 2.3e-60 237.3 177 65.5
arahy.Tifrunner.gnm1.ann1.CI84PE Arachis hypogaea HOM05D004738 ORTHO05D006439 1.9e-57 227.6 197 62.9
TAR636G0147 Trochodendron aralioides HOM05D004738 ORTHO05D051490 6.6e-39 166.0 164 46.3
TAR636G3653 Trochodendron aralioides HOM05D004738 ORTHO05D051490 3.3e-38 163.7 164 45.7
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 5.6e-38 162.9 284 38.0
Dinv38065 Davidia involucrata HOM05D004738 ORTHO05D006439 1.2e-35 155.2 81 88.9
Nn4g26563 Nelumbo nucifera HOM05D004738 ORTHO05D006439 2.6e-35 154.1 241 40.7
Ah.09g223940 Amaranthus hybridus HOM05D004738 ORTHO05D001643 1.3e-29 135.2 95 73.7
Sabra01G0149000 Salix brachista HOM05D004738 ORTHO05D006439 1.8e-28 131.3 129 51.2
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 1.3e-21 108.6 126 46.0
Nn1g05393 Nelumbo nucifera HOM05D004738 ORTHO05D280673 1.9e-17 94.7 82 54.9
Pp3c21_6430 Physcomitrium patens HOM05D004738 ORTHO05D314778 2.5e-09 67.8 52 50.0
Nn3g18662 Nelumbo nucifera HOM05D004738 ORTHO05D273315 2.5e-06 57.8 46 52.2


User provided reference genes

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