Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005394 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 1.4e-243 845.9 440 100.0
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 2.3e-121 439.9 442 60.4
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 4.0e-105 386.0 426 57.0
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 4.1e-102 375.9 433 55.7
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 1.8e-89 334.0 370 56.8
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 3.3e-83 313.2 445 49.9
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 3.1e-81 306.6 433 49.4
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 4.2e-78 296.2 448 46.9
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 1.0e-76 291.6 438 46.3
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 1.5e-72 277.7 435 46.2
Cfa016262 Carpinus fangiana HOM05D003626 ORTHO05D004255 2.6e-72 276.9 442 44.6
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 3.8e-71 273.1 445 44.9
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 1.2e-69 268.1 404 43.8
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 2.1e-69 267.3 455 43.7
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 3.5e-69 266.5 327 54.4
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 5.1e-68 262.7 434 43.3
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 1.1e-67 261.5 443 42.4
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 2.5e-67 260.4 441 42.9
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 4.0e-65 253.1 423 42.8
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 5.3e-65 252.7 444 42.3
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.2e-64 251.5 438 42.2
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 2.2e-63 247.3 449 41.6
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 1.1e-62 245.0 444 42.3
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 1.9e-62 244.2 431 44.1
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.9e-62 244.2 467 41.5
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 3.2e-62 243.4 436 43.6
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 3.5e-61 240.0 433 41.1
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 6.0e-61 239.2 431 43.6
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 1.3e-60 238.0 445 41.3
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 3.0e-60 236.9 446 40.8
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 1.5e-59 234.6 443 39.1
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 1.5e-59 234.6 440 41.4
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 7.4e-59 232.3 446 38.8
Peaxi162Scf00444g00425 Petunia axillaris HOM05D003626 ORTHO05D004255 3.7e-58 229.9 439 40.1
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.1e-57 228.4 450 40.7
FAN01G0376 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.8e-57 227.6 428 41.4
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 3.1e-57 226.9 426 40.8
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 5.3e-57 226.1 435 41.1
Sabra12G0107600 Salix brachista HOM05D003626 ORTHO05D004255 6.9e-57 225.7 433 42.7
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 9.0e-57 225.3 433 38.8
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 2.0e-56 224.2 432 42.4
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 2.6e-56 223.8 446 38.8
FAN03G3125 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.6e-56 223.8 450 40.2
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 3.4e-56 223.4 448 39.1
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 4.5e-56 223.0 432 41.9
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 2.2e-55 220.7 434 40.1
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 3.8e-55 219.9 432 41.0
Nitab4.5_0000084g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.1e-54 218.4 439 41.2
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 1.9e-54 217.6 431 39.4
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 1.9e-54 217.6 443 40.4
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 2.5e-54 217.2 439 39.9
FAN10G2476 Fragaria x ananassa HOM05D003626 ORTHO05D004255 4.2e-54 216.5 456 39.5
FAN10G0313 Fragaria x ananassa HOM05D003626 ORTHO05D004255 7.1e-54 215.7 441 39.9
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 7.1e-54 215.7 439 40.5
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 9.3e-54 215.3 452 38.1
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 1.2e-53 214.9 425 39.3
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 7.9e-53 212.2 435 40.5
Sed0014313 Sechium edule HOM05D003626 ORTHO05D004255 2.3e-52 210.7 448 39.3
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 3.0e-52 210.3 405 40.2
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 8.7e-52 208.8 447 37.4
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 1.1e-51 208.4 430 40.0
Lalb_Chr06g0161221 Lupinus albus HOM05D003626 ORTHO05D004255 5.7e-51 206.1 431 38.5
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 1.3e-50 204.9 431 39.9
Nitab4.5_0001951g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 2.8e-50 203.8 436 38.8
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 4.8e-50 203.0 432 36.6
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 6.2e-50 202.6 429 36.1
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 1.4e-49 201.4 452 38.3
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 2.4e-49 200.7 430 36.3
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 3.1e-49 200.3 433 37.4
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 4.1e-49 199.9 448 36.2
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.2e-48 198.4 412 38.3
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 7.6e-48 195.7 429 36.8
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 1.3e-47 194.9 428 36.7
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 6.5e-47 192.6 431 33.4
Lalb_Chr21g0305131 Lupinus albus HOM05D003626 ORTHO05D004255 1.9e-46 191.0 417 36.9
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 2.1e-45 187.6 439 39.9
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 1.0e-44 185.3 438 39.3
MBI17_g24687_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 1.0e-44 185.3 439 38.0
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 1.3e-44 184.9 431 38.7
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 4.3e-43 179.9 504 34.1
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 7.4e-43 179.1 432 35.0
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 4.8e-42 176.4 444 36.0
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 6.3e-42 176.0 444 34.0
Rhsim05G0045800 Rhododendron simsii HOM05D003626 ORTHO05D004255 2.4e-41 174.1 330 43.3
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 6.9e-41 172.6 446 36.1
FAN06G1666 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.2e-40 171.8 417 36.5
Ciclev10006582m.g Citrus clementina HOM05D003626 ORTHO05D004255 7.7e-40 169.1 287 41.1
ECA238G3668 Erigeron canadensis HOM05D003626 ORTHO05D004255 2.2e-39 167.5 489 33.9
MSTRG.27103 Avicennia marina HOM05D003626 ORTHO05D004255 8.5e-39 165.6 424 36.1
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 1.1e-38 165.2 435 36.8
Migut.F00325 Erythranthe guttata HOM05D003626 ORTHO05D004255 1.4e-38 164.9 421 34.4
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 3.2e-38 163.7 429 34.5
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 1.2e-37 161.8 427 34.2
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 1.2e-37 161.8 434 35.5
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 2.7e-37 160.6 450 33.3
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 7.9e-37 159.1 444 35.4
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 8.8e-36 155.6 418 33.3
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 2.5e-35 154.1 455 33.2
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 2.5e-35 154.1 432 31.7
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 7.4e-35 152.5 397 37.8
PGSC0003DMG400029919 Solanum tuberosum HOM05D003626 ORTHO05D004255 1.3e-34 151.8 442 33.3
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 1.3e-31 141.7 343 36.4
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 5.0e-31 139.8 411 36.3
DCAR_029574 Daucus carota HOM05D003626 ORTHO05D004255 5.5e-30 136.3 458 30.8
MBI18_g29423_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 9.4e-30 135.6 458 34.3
Lalb_Chr02g0141141 Lupinus albus HOM05D003626 ORTHO05D004255 7.9e-29 132.5 366 33.1
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 1.0e-28 132.1 372 34.4
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 1.4e-28 131.7 385 34.3
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 6.7e-28 129.4 426 34.5
FAN06G2167 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.3e-26 125.2 288 39.2
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 4.8e-26 123.2 375 34.1
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 1.1e-25 122.1 442 31.4
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 7.0e-25 119.4 375 34.4
Solyc06g036060.4 Solanum lycopersicum HOM05D003626 ORTHO05D004255 1.2e-24 118.6 419 30.8
Ah.07g206910 Amaranthus hybridus HOM05D003626 ORTHO05D004255 5.9e-24 116.3 429 31.2
MSTRG.82 Avicennia marina HOM05D003626 ORTHO05D004255 1.0e-23 115.5 354 31.1
Ca_13872_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 1.9e-22 111.3 420 29.3
TAR375G0736 Trochodendron aralioides HOM05D003626 ORTHO05D004255 3.2e-22 110.5 105 55.2
Lj5g0006318 Lotus japonicus HOM05D003626 ORTHO05D004255 1.4e-20 105.1 516 27.5
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 5.2e-20 103.2 375 29.6
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 8.8e-20 102.4 432 28.0
BcaC06g32796 Brassica carinata HOM05D003626 ORTHO05D004255 1.1e-19 102.1 320 32.2
SGA_v2.0_scaffold60G21078 Striga asiatica HOM05D003626 ORTHO05D004255 1.5e-19 101.7 414 31.2
THA.LOC104825103 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 2.2e-18 97.8 295 31.5
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 2.8e-18 97.4 344 30.2
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 2.8e-18 97.4 343 29.7
Medtr6g053660 Medicago truncatula HOM05D003626 ORTHO05D004255 6.3e-18 96.3 438 29.2
Oeu035062.1 Olea europaea HOM05D003626 ORTHO05D004255 6.3e-18 96.3 167 41.3
C07p54460 Brassica napus HOM05D003626 ORTHO05D004255 1.8e-17 94.7 369 27.6
THA.LOC104811971 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 3.1e-17 94.0 310 32.3
A03p56130 Brassica napus HOM05D003626 ORTHO05D004255 1.2e-16 92.0 417 28.5
BolC7t45931H Brassica oleracea HOM05D003626 ORTHO05D004255 2.0e-16 91.3 369 27.1
TPR.G8172 Trifolium pratense HOM05D003626 ORTHO05D004255 2.0e-16 91.3 477 28.9
CARHR233030 Cardamine hirsuta HOM05D003626 ORTHO05D004255 3.5e-16 90.5 371 28.3
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 4.5e-16 90.1 345 29.0
FAN06G0571 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.0e-15 89.0 102 52.9
BcaC09g50754 Brassica carinata HOM05D003626 ORTHO05D004255 1.3e-15 88.6 379 29.6
Peaxi162Scf00848g00116 Petunia axillaris HOM05D003626 ORTHO05D004255 2.2e-15 87.8 301 27.6
A01p16870 Brassica napus HOM05D003626 ORTHO05D004255 5.0e-15 86.7 378 27.8
C01p21150 Brassica napus HOM05D003626 ORTHO05D004255 5.0e-15 86.7 379 29.3
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 6.5e-15 86.3 371 28.6
Aa31LG3G8800 Aethionema arabicum HOM05D003626 ORTHO05D004255 3.2e-14 84.0 364 28.3
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 3.6e-13 80.5 420 26.9
Psat0s4127g0040 Pisum sativum HOM05D003626 ORTHO05D004255 6.1e-13 79.7 379 28.8
ATR0680G428 Amborella trichopoda HOM05D003626 ORTHO05D004255 1.8e-12 78.2 230 31.7
BcaNung03703 Brassica carinata HOM05D003626 ORTHO05D004255 3.0e-12 77.4 374 29.4
Migut.F01102 Erythranthe guttata HOM05D003626 ORTHO05D004255 9.8e-11 72.4 346 27.5
CDE06G1616 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 1.1e-09 68.9 177 31.6
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 2.4e-09 67.8 348 28.7
SHI13766 Sapria himalayana HOM05D003626 ORTHO05D004255 1.7e-07 61.6 194 30.4
TAR374G0267 Trochodendron aralioides HOM05D003626 ORTHO05D004255 3.2e-06 57.4 87 40.2


User provided reference genes

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