Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005385 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 7.6e-126 453.8 216 100.0
CSS0032746 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.8e-71 273.1 224 64.7
CSS0027528 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.0e-65 253.1 217 62.2
CSS0028314 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 4.4e-49 198.7 208 51.9
CSS0013136 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.8e-43 179.5 178 57.3
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 2.2e-32 143.3 202 43.1
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 6.4e-32 141.7 202 43.1
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.1e-30 136.7 202 42.1
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.7e-30 136.3 202 41.6
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.7e-30 136.3 204 42.2
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 4.6e-30 135.6 222 41.9
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 3.9e-29 132.5 193 45.1
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 6.7e-29 131.7 220 41.8
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 7.4e-28 128.3 198 39.4
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 9.6e-28 127.9 220 40.0
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 1.3e-27 127.5 190 42.1
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 1.3e-27 127.5 190 42.1
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 3.6e-27 125.9 198 39.9
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 1.4e-26 124.0 204 37.3
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 1.8e-26 123.6 198 41.9
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 5.3e-26 122.1 196 39.3
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 5.8e-25 118.6 202 41.1
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 1.3e-24 117.5 192 40.1
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.8e-24 115.9 195 37.9
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 6.4e-24 115.2 204 38.2
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 4.2e-23 112.5 222 37.4
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.2e-23 112.5 202 39.6
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 5.5e-23 112.1 204 37.3
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-22 110.9 199 38.2
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.5e-22 109.4 205 39.5
MD17G1148000 Malus domestica HOM05D004865 ORTHO05D005949 3.0e-21 106.3 212 35.8
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.7e-21 104.8 198 38.9
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 1.9e-20 103.6 150 41.3
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.3e-19 100.9 201 36.3
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.2e-19 98.6 194 32.5
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 1.4e-18 97.4 164 37.2
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.8e-18 97.1 196 36.2
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 2.4e-18 96.7 192 32.8
Sc22g0001720 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.0e-18 95.9 165 41.8
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 5.3e-18 95.5 144 43.1
Sc09g0006340 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.3e-18 95.5 198 36.4
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 9.0e-18 94.7 194 33.5
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.2e-17 94.4 176 34.1
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-17 94.4 188 37.2
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 2.0e-17 93.6 170 33.5
Sc09g0006330 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.0e-17 93.6 168 35.7
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 4.5e-17 92.4 170 33.5
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 7.6e-17 91.7 199 35.7
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 2.9e-16 89.7 188 33.5
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 2.9e-16 89.7 143 39.9
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 2.9e-16 89.7 143 39.9
Sc06g0005920 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.9e-16 89.7 193 35.2
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 2.9e-16 89.7 185 34.6
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 1.1e-15 87.8 198 31.3
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 1.1e-15 87.8 198 31.3
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 1.1e-15 87.8 198 31.3
Lj6P373T4 Lonicera japonica HOM05D004865 ORTHO05D005949 1.1e-15 87.8 136 41.9
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.9e-15 87.0 193 32.6
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.9e-15 87.0 145 41.4
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.9e-15 87.0 195 33.8
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.2e-15 86.3 207 32.9
Sc22g0001750 Simmondsia chinensis HOM05D004865 ORTHO05D005949 9.3e-15 84.7 195 33.3
ClCG11G011710 Citrullus lanatus HOM05D004865 ORTHO05D034719 2.1e-14 83.6 201 31.8
Sed0001554 Sechium edule HOM05D004865 ORTHO05D034719 2.1e-14 83.6 214 30.8
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 3.5e-14 82.8 195 30.8
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.5e-14 82.8 161 35.4
AUR62036569 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.5e-14 82.8 186 33.3
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.6e-14 82.4 184 32.6
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 4.6e-14 82.4 194 30.9
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 4.6e-14 82.4 129 41.9
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 4.6e-14 82.4 129 41.9
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 7.9e-14 81.6 195 30.8
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.0e-13 81.3 195 30.8
Sc17g0004370 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.3e-13 80.9 161 32.9
DCAR_016015 Daucus carota HOM05D004865 ORTHO05D005949 1.8e-13 80.5 188 34.0
HanXRQChr13g0416741 Helianthus annuus HOM05D004865 ORTHO05D005949 2.3e-13 80.1 126 37.3
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 5.1e-13 79.0 129 41.1
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 5.1e-13 79.0 129 41.1
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 1.1e-12 77.8 177 30.5
DCAR_016016 Daucus carota HOM05D004865 ORTHO05D005949 1.5e-12 77.4 159 36.5
HanXRQChr13g0416751 Helianthus annuus HOM05D004865 ORTHO05D005949 1.5e-12 77.4 126 34.1
HanXRQChr13g0416771 Helianthus annuus HOM05D004865 ORTHO05D005949 1.5e-12 77.4 126 34.1
AUR62044724 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.5e-12 76.6 160 36.2
Lsat_1_v5_gn_0_11001 Lactuca sativa HOM05D004865 ORTHO05D005949 4.3e-12 75.9 211 31.3
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 4.3e-12 75.9 130 39.2
Zm00001eb137370 Zea mays HOM05D004865 ORTHO05D005949 5.7e-12 75.5 180 32.8
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.3e-11 74.3 104 44.2
Lj1P308T9 Lonicera japonica HOM05D004865 ORTHO05D005949 1.6e-11 73.9 130 38.5
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 3.7e-11 72.8 179 30.7
Lsat_1_v5_gn_6_87560 Lactuca sativa HOM05D004865 ORTHO05D005949 6.3e-11 72.0 125 35.2
Zm00001eb137430 Zea mays HOM05D004865 ORTHO05D005949 8.2e-11 71.6 180 31.7
AUR62012547 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.4e-10 70.9 188 29.3
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.4e-10 70.9 104 40.4
HanXRQChr03g0085651 Helianthus annuus HOM05D004865 ORTHO05D005949 1.4e-10 70.9 129 34.1
Sc24g0002440 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.8e-10 70.5 124 37.9
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 2.4e-10 70.1 140 35.7
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 5.3e-10 68.9 188 27.7
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 5.3e-10 68.9 188 27.7
SGA_v2.0_scaffold163G38046 Striga asiatica HOM05D004865 ORTHO05D005949 6.9e-10 68.6 164 30.5
AUR62027395 Chenopodium quinoa HOM05D004865 ORTHO05D005949 9.0e-10 68.2 180 31.7
Sed0020964 Sechium edule HOM05D004865 ORTHO05D005949 1.5e-09 67.4 105 36.2
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.0e-09 67.0 144 32.6
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.6e-09 66.6 166 31.9
Sc16g0002960 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.6e-09 65.1 145 31.7
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.2e-08 63.5 150 31.3
EL10Ac3g05478 Beta vulgaris HOM05D009434 ORTHO05D011504 2.9e-08 63.2 119 37.0
AUR62014650 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.9e-08 63.2 88 40.9
AUR62001167 Chenopodium quinoa HOM05D009434 ORTHO05D011504 3.8e-08 62.8 168 29.8
Sc16g0002940 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.8e-08 62.8 107 34.6
EL10Ac3g05480 Beta vulgaris HOM05D009434 ORTHO05D011504 6.5e-08 62.0 107 35.5
EL10Ac3g05481 Beta vulgaris HOM05D009434 ORTHO05D011504 6.5e-08 62.0 126 32.5
EL10Ac3g05482 Beta vulgaris HOM05D009434 ORTHO05D011504 6.5e-08 62.0 126 32.5
EL10Ac3g05483 Beta vulgaris HOM05D009434 ORTHO05D011504 6.5e-08 62.0 126 32.5
EL10Ac3g05484 Beta vulgaris HOM05D009434 ORTHO05D011504 6.5e-08 62.0 126 32.5
ECA233G6014 Erigeron canadensis HOM05D004865 ORTHO05D005949 1.9e-07 60.5 125 35.2
EL10Ac8g20500 Beta vulgaris HOM05D004865 ORTHO05D005949 2.5e-07 60.1 186 31.2
Sc23g0005400 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.5e-07 60.1 146 34.9
AUR62044116 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.2e-07 59.7 94 39.4
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 5.5e-07 58.9 142 33.8
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 5.5e-07 58.9 142 33.8
AUR62022156 Chenopodium quinoa HOM05D009434 ORTHO05D011504 7.2e-07 58.5 156 27.6
EL10Ac6g13634 Beta vulgaris HOM05D004865 ORTHO05D005949 1.6e-06 57.4 141 34.0
AUR62012550 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.6e-06 57.4 215 27.0
ECA233G2698 Erigeron canadensis HOM05D004865 ORTHO05D005949 2.1e-06 57.0 122 32.8
SGA_v2.0_scaffold105G30447 Striga asiatica HOM05D004865 ORTHO05D005949 2.1e-06 57.0 153 27.5
ECA233G0596 Erigeron canadensis HOM05D004865 ORTHO05D000001 4.6e-06 55.8 122 32.0
HanXRQChr03g0085641 Helianthus annuus HOM05D004865 ORTHO05D005949 4.6e-06 55.8 115 32.2


User provided reference genes

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