Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005314 Camellia sinensis var. sinensis HOM05D007450 ORTHO05D009377 2.2e-52 208.8 110 100.0
Rhsim07G0130700 Rhododendron simsii HOM05D007450 ORTHO05D009377 6.6e-41 170.6 110 81.8
Dinv25243 Davidia involucrata HOM05D007450 ORTHO05D009377 4.3e-40 167.9 110 84.5
Actinidia14787 Actinidia chinensis HOM05D007450 ORTHO05D009377 1.2e-37 159.8 110 81.8
Actinidia09178 Actinidia chinensis HOM05D007450 ORTHO05D009377 1.3e-36 156.4 108 81.5
Dinv28985 Davidia involucrata HOM05D007450 ORTHO05D009377 4.1e-35 151.4 90 88.9
vmacro14189 Vaccinium macrocarpon HOM05D007450 ORTHO05D009377 3.5e-34 148.3 93 83.9
Gohir.A12G207000 Gossypium hirsutum HOM05D007450 ORTHO05D009377 9.5e-32 140.2 107 71.0
Lsat_1_v5_gn_6_1640 Lactuca sativa HOM05D007450 ORTHO05D009377 9.5e-32 140.2 110 68.2
ECA233G1068 Erigeron canadensis HOM05D007450 ORTHO05D009377 1.2e-31 139.8 104 72.1
Manes.14G162800 Manihot esculenta HOM05D007450 ORTHO05D009377 4.7e-31 137.9 101 70.3
CiPaw.11G096800 Carya illinoinensis HOM05D007450 ORTHO05D009377 4.0e-30 134.8 105 66.7
Cc08_g03220 Coffea canephora HOM05D007450 ORTHO05D009377 5.2e-30 134.4 94 80.9
Peaxi162Scf00170g00915 Petunia axillaris HOM05D007450 ORTHO05D009377 5.8e-29 131.0 111 66.7
Duzib205G1651 Durio zibethinus HOM05D007450 ORTHO05D009377 9.9e-29 130.2 105 66.7
Potri.001G138700 Populus trichocarpa HOM05D007450 ORTHO05D009377 1.3e-28 129.8 106 67.0
Nitab4.5_0000353g0070 Nicotiana tabacum HOM05D007450 ORTHO05D009377 1.7e-28 129.4 102 70.6
CAN.G298.58 Capsicum annuum HOM05D007450 ORTHO05D009377 2.2e-28 129.0 106 67.9
Gohir.D12G209400 Gossypium hirsutum HOM05D007450 ORTHO05D009377 2.9e-28 128.6 111 65.8
Peaxi162Scf00170g01010 Petunia axillaris HOM05D007450 ORTHO05D009377 3.7e-28 128.3 111 64.9
Peaxi162Scf00879g00221 Petunia axillaris HOM05D007450 ORTHO05D009377 3.7e-28 128.3 111 64.9
Solyc08g076580.3 Solanum lycopersicum HOM05D007450 ORTHO05D009377 4.9e-28 127.9 106 66.0
Cfa012487 Carpinus fangiana HOM05D007450 ORTHO05D009377 8.3e-28 127.1 105 67.6
DCAR_008242 Daucus carota HOM05D007450 ORTHO05D009377 8.3e-28 127.1 93 75.3
FAN08G0787 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.4e-27 126.3 105 66.7
FvH4_5g22750 Fragaria vesca HOM05D007450 ORTHO05D009377 3.2e-27 125.2 107 65.4
FAN18G1197 Fragaria x ananassa HOM05D007450 ORTHO05D009377 3.2e-27 125.2 107 65.4
FAN18G1518 Fragaria x ananassa HOM05D007450 ORTHO05D009377 3.2e-27 125.2 107 65.4
HanXRQChr13g0395471 Helianthus annuus HOM05D007450 ORTHO05D009377 3.2e-27 125.2 111 62.2
Nitab4.5_0000685g0040 Nicotiana tabacum HOM05D007450 ORTHO05D009377 4.1e-27 124.8 92 73.9
Medtr5g029660 Medicago truncatula HOM05D007450 ORTHO05D009377 7.1e-27 124.0 109 63.3
RcHm_v2.0_Chr7g0211351 Rosa chinensis HOM05D007450 ORTHO05D009377 1.2e-26 123.2 107 64.5
FAN13G0277 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.6e-26 122.9 107 64.5
FAN13G1033 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.6e-26 122.9 107 64.5
FAN04G2147 Fragaria x ananassa HOM05D007450 ORTHO05D009377 2.7e-26 122.1 107 64.5
Psat2g138000 Pisum sativum HOM05D007450 ORTHO05D009377 3.5e-26 121.7 109 62.4
Thecc.03G307400 Theobroma cacao HOM05D007450 ORTHO05D009377 4.6e-26 121.3 90 74.4
TAR629G3037 Trochodendron aralioides HOM05D007450 ORTHO05D009377 7.8e-26 120.6 112 63.4
Prupe.5G030900 Prunus persica HOM05D007450 ORTHO05D009377 1.7e-25 119.4 110 62.7
PGR031G1038 Punica granatum HOM05D007450 ORTHO05D009377 1.7e-25 119.4 109 60.6
Sopen08g025140 Solanum pennellii HOM05D007450 ORTHO05D009377 3.0e-25 118.6 92 70.7
Sabra01G0107700 Salix brachista HOM05D007450 ORTHO05D009377 3.9e-25 118.2 86 72.1
PGSC0003DMG400014800 Solanum tuberosum HOM05D007450 ORTHO05D009377 5.1e-25 117.9 92 69.6
MSTRG.1994 Avicennia marina HOM05D007450 ORTHO05D009377 8.6e-25 117.1 100 63.0
MD06G1038000 Malus domestica HOM05D007450 ORTHO05D009377 8.6e-25 117.1 117 61.5
Ca_08150_v3 Cicer arietinum L. HOM05D007450 ORTHO05D009377 1.9e-24 115.9 108 62.0
Thhalv10009436m.g Eutrema salsugineum HOM05D007450 ORTHO05D009377 2.5e-24 115.5 93 63.4
Ciclev10018330m.g Citrus clementina HOM05D007450 ORTHO05D009377 5.6e-24 114.4 94 66.0
GSVIVG01013568001 Vitis vinifera HOM05D007450 ORTHO05D009377 5.6e-24 114.4 85 72.9
Lj2g0017142 Lotus japonicus HOM05D007450 ORTHO05D009377 9.5e-24 113.6 108 62.0
CANSAT21G1074 Cannabis sativa HOM05D007450 ORTHO05D009377 1.2e-23 113.2 107 58.9
Gorai.008G225000 Gossypium raimondii HOM05D007450 ORTHO05D009377 1.2e-23 113.2 93 68.8
QL12p004405 Quercus lobata HOM05D007450 ORTHO05D009377 1.2e-23 113.2 105 65.7
Atru.chr6.1639 Acer truncatum HOM05D007450 ORTHO05D009377 4.7e-23 111.3 79 67.1
Carub.0001s3064 Capsella rubella HOM05D007450 ORTHO05D009377 1.8e-22 109.4 90 63.3
Eucgr.E00251 Eucalyptus grandis HOM05D007450 ORTHO05D009377 3.1e-22 108.6 109 54.1
Glyma.01G015700 Glycine max HOM05D007450 ORTHO05D009377 4.0e-22 108.2 110 55.5
Lalb_Chr05g0215841 Lupinus albus HOM05D007450 ORTHO05D009377 4.0e-22 108.2 75 70.7
Sp1g27980 Schrenkiella parvula HOM05D007450 ORTHO05D009377 4.0e-22 108.2 90 63.3
AT1G32310 Arabidopsis thaliana HOM05D007450 ORTHO05D009377 5.2e-22 107.8 94 58.5
TPR.G8094 Trifolium pratense HOM05D007450 ORTHO05D009377 6.8e-22 107.5 111 58.6
THA.LOC104798592 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 1.5e-21 106.3 102 54.9
Aa31LG2G13720 Aethionema arabicum HOM05D007450 ORTHO05D009377 2.0e-21 105.9 90 62.2
Sed0022287 Sechium edule HOM05D007450 ORTHO05D009377 2.0e-21 105.9 85 67.1
Glyma.09G206700 Glycine max HOM05D007450 ORTHO05D009377 2.6e-21 105.5 110 53.6
ClCG09G011730 Citrullus lanatus HOM05D007450 ORTHO05D009377 7.6e-21 104.0 89 59.6
Potri.003G095100 Populus trichocarpa HOM05D007450 ORTHO05D009377 1.3e-20 103.2 86 64.0
BcaC05g27880 Brassica carinata HOM05D007450 ORTHO05D009377 1.7e-20 102.8 93 58.1
CARHR031660 Cardamine hirsuta HOM05D007450 ORTHO05D009377 1.7e-20 102.8 93 58.1
MELO3C003430.2 Cucumis melo HOM05D007450 ORTHO05D009377 1.7e-20 102.8 88 60.2
A05p25040 Brassica napus HOM05D007450 ORTHO05D009377 2.2e-20 102.4 93 58.1
HPP92_001521 Vanilla planifolia HOM05D007450 ORTHO05D009377 4.9e-20 101.3 101 58.4
THA.LOC104808475 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 8.4e-20 100.5 102 52.0
Haze_08178 Corylus avellana HOM05D007450 ORTHO05D009377 1.1e-19 100.1 119 52.1
Aqoxy3G02217 Aquilegia oxysepala HOM05D007450 ORTHO05D009377 3.2e-19 98.6 66 69.7
C05p38880 Brassica napus HOM05D007450 ORTHO05D009377 3.2e-19 98.6 94 57.4
BolC5t32629H Brassica oleracea HOM05D007450 ORTHO05D009377 3.2e-19 98.6 94 57.4
BcaB03g13745 Brassica carinata HOM05D007450 ORTHO05D009377 4.1e-19 98.2 93 55.9
Sed0003049 Sechium edule HOM05D007450 ORTHO05D009377 5.4e-19 97.8 86 59.3
arahy.Tifrunner.gnm1.ann1.UE78BX Arachis hypogaea HOM05D007450 ORTHO05D009377 7.1e-19 97.4 90 57.8
arahy.Tifrunner.gnm1.ann1.XXZI65 Arachis hypogaea HOM05D007450 ORTHO05D009377 7.1e-19 97.4 90 57.8
BraA05t21386Z Brassica rapa HOM05D007450 ORTHO05D009377 9.2e-19 97.1 83 62.7
PSO063G4138 Papaver somniferum HOM05D007450 ORTHO05D009377 6.0e-18 94.4 103 49.5
VMungo1215G2816 Vigna mungo HOM05D007450 ORTHO05D009377 6.0e-18 94.4 96 57.3
ATR0829G039 Amborella trichopoda HOM05D007450 ORTHO05D009377 1.7e-17 92.8 94 57.4
PSO782G2764 Papaver somniferum HOM05D007450 ORTHO05D009377 1.7e-17 92.8 103 48.5
SHI36446 Sapria himalayana HOM05D007450 ORTHO05D009377 5.1e-17 91.3 56 76.8
Lalb_Chr16g0381181 Lupinus albus HOM05D007450 ORTHO05D009377 1.5e-16 89.7 81 61.7
Migut.E00781 Erythranthe guttata HOM05D007450 ORTHO05D009377 3.6e-15 85.1 63 65.1
Phvul.002G138300 Phaseolus vulgaris HOM05D007450 ORTHO05D009377 4.7e-15 84.7 110 47.3
CDE11G0326 Ceratophyllum demersum HOM05D007450 ORTHO05D009377 1.1e-14 83.6 95 49.5
COL.COLO4_16968 Corchorus olitorius HOM05D007450 ORTHO05D009377 2.4e-14 82.4 52 73.1
SalBow1G6923 Salvia bowleyana HOM05D007450 ORTHO05D009377 5.2e-14 81.3 82 54.9
AUR62018673 Chenopodium quinoa HOM05D007450 ORTHO05D009377 6.9e-14 80.9 100 49.0
Hund11210 Selenicereus undatus HOM05D007450 ORTHO05D009377 9.0e-14 80.5 69 60.9
EL10Ac5g12043 Beta vulgaris HOM05D007450 ORTHO05D009377 7.6e-13 77.4 68 60.3
Sc01g0007300 Simmondsia chinensis HOM05D007450 ORTHO05D009377 1.7e-12 76.3 119 42.0
Zm00001eb024740 Zea mays HOM05D007450 ORTHO05D009377 1.6e-10 69.7 88 51.1
Os10g0575950 Oryza sativa ssp. japonica HOM05D007450 ORTHO05D009377 3.5e-10 68.6 102 46.1
CsaV3_3G048930 Cucumis sativus L. HOM05D007450 ORTHO05D009377 2.3e-09 65.9 44 65.9
CARHR033090 Cardamine hirsuta HOM05D007450 ORTHO05D009377 1.3e-07 60.1 45 57.8
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 5.3e-06 54.7 65 47.7


User provided reference genes

Program Settings