Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005312 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 8.9e-111 403.7 211 100.0
Dinv35828 Davidia involucrata HOM05D005900 ORTHO05D007306 2.2e-69 266.2 229 65.1
vmacro15379 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 3.3e-65 252.3 253 59.7
Dinv16498 Davidia involucrata HOM05D005900 ORTHO05D007306 1.6e-64 250.0 201 69.2
Rhsim12G0016500 Rhododendron simsii HOM05D005900 ORTHO05D007306 5.8e-62 241.5 232 60.3
vmacro01013 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 1.3e-61 240.4 260 56.5
Oeu055297.1 Olea europaea HOM05D005900 ORTHO05D007306 1.3e-58 230.3 227 57.7
TAR629G1598 Trochodendron aralioides HOM05D005900 ORTHO05D007306 3.9e-58 228.8 222 59.5
Hma1.2p1_1494F.1_g286930 Hydrangea macrophylla HOM05D005900 ORTHO05D007306 8.7e-58 227.6 246 54.9
TAR371G1211 Trochodendron aralioides HOM05D005900 ORTHO05D007306 6.2e-56 221.5 249 55.4
GSVIVG01001102001 Vitis vinifera HOM05D005900 ORTHO05D007306 1.7e-53 213.4 222 55.9
CsaV3_4G033440 Cucumis sativus L. HOM05D005900 ORTHO05D007306 2.5e-52 209.5 242 50.8
QL03p048972 Quercus lobata HOM05D005900 ORTHO05D007306 2.5e-52 209.5 225 55.1
Oeu001539.2 Olea europaea HOM05D005900 ORTHO05D007306 3.2e-52 209.1 275 48.7
CSS0033783 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 4.6e-51 205.3 165 72.1
MSTRG.22403 Avicennia marina HOM05D005900 ORTHO05D007306 6.0e-51 204.9 226 53.1
PGSC0003DMG400008953 Solanum tuberosum HOM05D005900 ORTHO05D007306 6.7e-50 201.4 214 55.6
CANSAT80G1963 Cannabis sativa HOM05D005900 ORTHO05D007306 1.1e-49 200.7 218 55.0
Nitab4.5_0000059g0460 Nicotiana tabacum HOM05D005900 ORTHO05D007306 1.1e-49 200.7 233 53.6
Sopen09g004610 Solanum pennellii HOM05D005900 ORTHO05D007306 1.1e-49 200.7 214 55.6
Solyc09g009850.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 1.9e-49 199.9 214 55.6
Nitab4.5_0000191g0220 Nicotiana tabacum HOM05D005900 ORTHO05D007306 9.6e-49 197.6 233 52.8
PGSC0003DMG400022718 Solanum tuberosum HOM05D005900 ORTHO05D007306 2.1e-48 196.4 216 55.1
Cc04_g15880 Coffea canephora HOM05D005900 ORTHO05D007306 4.8e-48 195.3 219 53.4
CANSAT80G1771 Cannabis sativa HOM05D005900 ORTHO05D007306 6.2e-48 194.9 218 54.1
Sed0015511 Sechium edule HOM05D005900 ORTHO05D007306 9.0e-47 191.0 237 49.8
DCAR_030841 Daucus carota HOM05D005900 ORTHO05D007306 4.5e-46 188.7 220 50.0
CiPaw.05G100400 Carya illinoinensis HOM05D005900 ORTHO05D007306 1.0e-45 187.6 210 52.9
Solyc01g008760.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 1.7e-45 186.8 211 54.0
Peaxi162Scf00079g01513 Petunia axillaris HOM05D005900 ORTHO05D007306 1.1e-44 184.1 245 47.8
Peaxi162Scf00698g00117 Petunia axillaris HOM05D005900 ORTHO05D007306 1.4e-44 183.7 230 49.6
Atru.chr12.1436 Acer truncatum HOM05D005900 ORTHO05D007306 1.9e-44 183.3 236 48.7
Sabra01G0047700 Salix brachista HOM05D005900 ORTHO05D007306 5.5e-44 181.8 228 50.4
ClCG11G017800 Citrullus lanatus HOM05D005900 ORTHO05D007306 1.6e-43 180.3 241 46.9
Haze_24259 Corylus avellana HOM05D005900 ORTHO05D007306 2.7e-43 179.5 229 49.8
TWI18G0365 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 7.9e-43 177.9 211 49.8
Cfa011664 Carpinus fangiana HOM05D005900 ORTHO05D007306 2.3e-42 176.4 230 48.7
Migut.C01115 Erythranthe guttata HOM05D005900 ORTHO05D007306 3.0e-42 176.0 219 49.8
SGA_v2.0_scaffold28G11983 Striga asiatica HOM05D005900 ORTHO05D007306 3.0e-42 176.0 226 48.7
SGA_v2.0_scaffold154G37193 Striga asiatica HOM05D005900 ORTHO05D007306 3.9e-42 175.6 226 48.2
Cpa.g.sc36.199 Carica papaya HOM05D005900 ORTHO05D007306 5.1e-42 175.3 241 45.6
Migut.C00405 Erythranthe guttata HOM05D005900 ORTHO05D007306 5.1e-42 175.3 205 52.2
Potri.001G068500 Populus trichocarpa HOM05D005900 ORTHO05D007306 5.1e-42 175.3 228 49.6
TWI36G0396 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 5.1e-42 175.3 210 50.5
Ciclev10005823m.g Citrus clementina HOM05D005900 ORTHO05D007306 1.5e-41 173.7 227 47.1
Sc06g0007790 Simmondsia chinensis HOM05D005900 ORTHO05D007306 1.9e-41 173.3 219 51.6
Eucgr.B02910 Eucalyptus grandis HOM05D005900 ORTHO05D007306 2.5e-41 172.9 236 47.0
PGR102G3094 Punica granatum HOM05D005900 ORTHO05D007306 2.5e-41 172.9 228 47.8
SalBow2G0170 Salvia bowleyana HOM05D005900 ORTHO05D007306 7.4e-41 171.4 209 50.2
Cfa010215 Carpinus fangiana HOM05D005900 ORTHO05D007306 1.3e-40 170.6 230 48.7
Hund20854 Selenicereus undatus HOM05D005900 ORTHO05D007306 2.2e-40 169.9 219 48.9
CiPaw.03G184600 Carya illinoinensis HOM05D005900 ORTHO05D007306 6.3e-40 168.3 179 53.6
Prupe.1G213900 Prunus persica HOM05D005900 ORTHO05D007306 8.2e-40 167.9 220 49.5
RcHm_v2.0_Chr4g0428761 Rosa chinensis HOM05D005900 ORTHO05D007306 1.1e-39 167.5 240 45.4
MBI11_g07033_MAGBIO Magnolia biondii HOM05D005900 ORTHO05D007306 1.4e-39 167.2 232 49.6
PSO170G6181 Papaver somniferum HOM05D005900 ORTHO05D007306 9.0e-39 164.5 213 47.9
PSO017G3279 Papaver somniferum HOM05D005900 ORTHO05D007306 3.4e-38 162.5 209 46.9
Eucgr.E01503 Eucalyptus grandis HOM05D005900 ORTHO05D007306 4.5e-38 162.2 225 46.2
FAN07G0479 Fragaria x ananassa HOM05D005900 ORTHO05D007306 6.5e-37 158.3 222 45.0
FvH4_4g22530 Fragaria vesca HOM05D005900 ORTHO05D007306 1.1e-36 157.5 222 45.0
FAN12G4206 Fragaria x ananassa HOM05D005900 ORTHO05D007306 1.1e-36 157.5 222 45.0
FAN17G1441 Fragaria x ananassa HOM05D005900 ORTHO05D007306 1.2e-35 154.1 169 50.3
EL10Ac1g01696 Beta vulgaris HOM05D005900 ORTHO05D007306 6.1e-35 151.8 217 45.2
CDE09G0879 Ceratophyllum demersum HOM05D005900 ORTHO05D007306 8.8e-34 147.9 216 44.0
AUR62006518 Chenopodium quinoa HOM05D005900 ORTHO05D007306 1.1e-33 147.5 215 45.1
AUR62025013 Chenopodium quinoa HOM05D005900 ORTHO05D007306 1.1e-33 147.5 216 44.4
COL.COLO4_27171 Corchorus olitorius HOM05D005900 ORTHO05D007306 1.1e-33 147.5 239 42.7
Ca_13888_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 2.0e-33 146.7 213 42.7
Ca_23210_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 4.3e-33 145.6 213 43.2
Gorai.002G021100 Gossypium raimondii HOM05D005900 ORTHO05D007306 9.7e-33 144.4 218 45.0
Lsat_1_v5_gn_2_95001 Lactuca sativa HOM05D005900 ORTHO05D007306 1.3e-32 144.1 220 45.0
Thecc.02G191100 Theobroma cacao HOM05D005900 ORTHO05D007306 1.7e-32 143.7 239 41.0
Gohir.D01G018900 Gossypium hirsutum HOM05D005900 ORTHO05D007306 3.7e-32 142.5 218 44.5
MD13G1131700 Malus domestica HOM05D005900 ORTHO05D007306 1.4e-31 140.6 201 47.8
ECA238G4295 Erigeron canadensis HOM05D005900 ORTHO05D007306 1.8e-31 140.2 203 47.3
MD16G1142000 Malus domestica HOM05D005900 ORTHO05D007306 9.1e-31 137.9 201 44.3
Psat4g204640 Pisum sativum HOM05D005900 ORTHO05D007306 9.1e-31 137.9 178 46.6
Gohir.A01G020300 Gossypium hirsutum HOM05D005900 ORTHO05D007306 2.6e-30 136.3 219 42.9
Os01g0259900 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 5.9e-30 135.2 186 45.2
Os08g0422600 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 1.0e-29 134.4 218 43.1
THA.LOC104799437 Tarenaya hassleriana HOM05D005900 ORTHO05D007306 1.7e-29 133.7 186 46.2
Lalb_Chr15g0079851 Lupinus albus HOM05D005900 ORTHO05D007306 3.8e-29 132.5 227 40.5
MELO3C032361.2 Cucumis melo HOM05D005900 ORTHO05D007306 8.5e-29 131.3 180 46.7
arahy.Tifrunner.gnm1.ann1.UQH0GN Arachis hypogaea HOM05D005900 ORTHO05D007306 3.2e-28 129.4 222 38.3
Zm00001eb127900 Zea mays HOM05D005900 ORTHO05D007306 1.6e-27 127.1 228 40.8
TPR.G16445 Trifolium pratense HOM05D005900 ORTHO05D007306 2.1e-27 126.7 215 40.9
arahy.Tifrunner.gnm1.ann1.5NZU5R Arachis hypogaea HOM05D005900 ORTHO05D007306 2.7e-27 126.3 225 37.8
VMungo0331G1117 Vigna mungo HOM05D005900 ORTHO05D007306 1.0e-26 124.4 219 42.5
Glyma.13G175800 Glycine max HOM05D005900 ORTHO05D007306 1.8e-26 123.6 218 41.3
Aa31LG1G17260 Aethionema arabicum HOM05D005900 ORTHO05D007306 3.0e-26 122.9 224 40.2
Lj3g0021746 Lotus japonicus HOM05D005900 ORTHO05D007306 3.0e-26 122.9 223 39.0
VMungo0251G3272 Vigna mungo HOM05D005900 ORTHO05D007306 3.0e-26 122.9 212 42.0
Medtr8g012410 Medicago truncatula HOM05D005900 ORTHO05D007306 6.7e-26 121.7 214 39.3
Sp2g27740 Schrenkiella parvula HOM05D005900 ORTHO05D007306 8.8e-26 121.3 217 39.2
BcaB07g29751 Brassica carinata HOM05D005900 ORTHO05D007306 1.1e-25 120.9 204 40.7
BcaC03g18270 Brassica carinata HOM05D005900 ORTHO05D007306 2.8e-24 116.3 199 39.7
BraA02t09265Z Brassica rapa HOM05D005900 ORTHO05D007306 2.8e-24 116.3 199 39.7
A02p43400 Brassica napus HOM05D005900 ORTHO05D007306 3.7e-24 115.9 199 39.7
Lj6g0004130 Lotus japonicus HOM05D005900 ORTHO05D007306 3.7e-24 115.9 214 40.7
C02p63500 Brassica napus HOM05D005900 ORTHO05D007306 6.3e-24 115.2 199 39.7
Glyma.07G200400 Glycine max HOM05D005900 ORTHO05D007306 6.3e-24 115.2 218 40.4
Phvul.002G231200 Phaseolus vulgaris HOM05D005900 ORTHO05D007306 6.3e-24 115.2 206 41.3
BcaC08g46818 Brassica carinata HOM05D005900 ORTHO05D007306 1.8e-23 113.6 132 47.7
BolC2t12415H Brassica oleracea HOM05D005900 ORTHO05D007306 3.1e-23 112.8 200 39.5
BolC6t39862H Brassica oleracea HOM05D005900 ORTHO05D007306 2.0e-22 110.2 156 44.2
Duzib052G0736 Durio zibethinus HOM05D005900 ORTHO05D007306 1.3e-21 107.5 250 34.8
Thhalv10004934m.g Eutrema salsugineum HOM05D005900 ORTHO05D007306 2.9e-21 106.3 202 39.1
Cc04_g15860 Coffea canephora HOM05D005900 ORTHO05D007306 3.8e-21 105.9 77 64.9
C03p61480 Brassica napus HOM05D005900 ORTHO05D007306 5.0e-21 105.5 207 37.2
Manes.08G100300 Manihot esculenta HOM05D005900 ORTHO05D007306 1.1e-20 104.4 227 35.2
Ca_13890_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 1.5e-20 104.0 99 53.5
Aqoxy4G02969 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 1.9e-20 103.6 199 40.2
ATR0582G041 Amborella trichopoda HOM05D005900 ORTHO05D007306 1.4e-18 97.4 175 40.6
BcaB04g19984 Brassica carinata HOM05D005900 ORTHO05D007306 5.2e-18 95.5 152 39.5
AL8G42100 Arabidopsis lyrata HOM05D005900 ORTHO05D007306 6.7e-18 95.1 209 35.9
unitig_747.g21266 Utricularia gibba HOM05D005900 ORTHO05D007306 8.8e-18 94.7 209 33.5
Haze_23070 Corylus avellana HOM05D005900 ORTHO05D007306 2.8e-16 89.7 159 43.4
AT5G64680 Arabidopsis thaliana HOM05D005900 ORTHO05D007306 6.3e-16 88.6 135 42.2
Aqoxy83s001 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 2.6e-14 83.2 147 40.8
Atru.chr12.1335 Acer truncatum HOM05D005900 ORTHO05D007306 3.5e-14 82.8 68 55.9
Aqoxy4G03322 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 5.9e-14 82.0 147 40.8
Aqoxy2G04193 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 1.8e-10 70.5 134 39.6
Carub.0008s2548 Capsella rubella HOM05D005900 ORTHO05D007306 5.7e-09 65.5 129 36.4
SEGI_10970 Sequoiadendron giganteum HOM05D005900 ORTHO05D007306 1.3e-08 64.3 220 31.4
CARHR278660 Cardamine hirsuta HOM05D005900 ORTHO05D007306 8.3e-08 61.6 187 32.1
Nn3g20876 Nelumbo nucifera HOM05D005900 ORTHO05D007306 3.1e-07 59.7 43 60.5


User provided reference genes

Program Settings