Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005301 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 5.5e-93 344.4 182 100.0
CSS0026635 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 2.7e-92 342.0 182 99.5
Actinidia35692 Actinidia chinensis HOM05D006312 ORTHO05D007843 1.3e-62 243.4 195 71.8
Actinidia28758 Actinidia chinensis HOM05D006312 ORTHO05D007843 5.0e-62 241.5 195 70.3
Rhsim08G0025300 Rhododendron simsii HOM05D006312 ORTHO05D007843 8.9e-59 230.7 191 68.1
COL.COLO4_27421 Corchorus olitorius HOM05D006312 ORTHO05D007843 1.6e-55 219.9 134 81.3
Thecc.05G202100 Theobroma cacao HOM05D006312 ORTHO05D007843 2.0e-55 219.5 169 69.8
TAR376G0343 Trochodendron aralioides HOM05D006312 ORTHO05D007843 2.0e-55 219.5 185 67.6
Eucgr.J02573 Eucalyptus grandis HOM05D006312 ORTHO05D007843 1.0e-54 217.2 146 76.0
arahy.Tifrunner.gnm1.ann1.YWP2KZ Arachis hypogaea HOM05D006312 ORTHO05D007843 1.7e-54 216.5 142 78.9
Manes.02G117611 Manihot esculenta HOM05D006312 ORTHO05D007843 1.9e-53 213.0 179 65.9
arahy.Tifrunner.gnm1.ann1.Y34PHS Arachis hypogaea HOM05D006312 ORTHO05D007843 3.3e-53 212.2 142 77.5
Gorai.013G007100 Gossypium raimondii HOM05D006312 ORTHO05D007843 5.6e-53 211.5 139 77.0
Cfa007119 Carpinus fangiana HOM05D006312 ORTHO05D007843 9.5e-53 210.7 176 67.0
Lsat_1_v5_gn_3_68340 Lactuca sativa HOM05D006312 ORTHO05D007843 9.5e-53 210.7 151 70.2
PGR102G2008 Punica granatum HOM05D006312 ORTHO05D007843 1.6e-52 209.9 172 67.4
Hund13396 Selenicereus undatus HOM05D006312 ORTHO05D007843 1.6e-52 209.9 136 76.5
Gohir.A13G006700 Gossypium hirsutum HOM05D006312 ORTHO05D007843 2.1e-52 209.5 155 69.7
Gohir.D13G006900 Gossypium hirsutum HOM05D006312 ORTHO05D007843 3.6e-52 208.8 155 69.7
MBI04_g11525_MAGBIO Magnolia biondii HOM05D006312 ORTHO05D007843 3.6e-52 208.8 130 81.5
VMungo1383G0261 Vigna mungo HOM05D006312 ORTHO05D007843 4.7e-52 208.4 174 64.4
MELO3C007014.2 Cucumis melo HOM05D006312 ORTHO05D007843 6.2e-52 208.0 140 73.6
Ca_08638_v3 Cicer arietinum L. HOM05D006312 ORTHO05D007843 8.0e-52 207.6 134 79.1
Glyma.03G158200 Glycine max HOM05D006312 ORTHO05D007843 8.0e-52 207.6 144 75.7
Prupe.7G188400 Prunus persica HOM05D006312 ORTHO05D007843 8.0e-52 207.6 182 62.6
Sed0011609 Sechium edule HOM05D006312 ORTHO05D007843 8.0e-52 207.6 133 74.4
Aqoxy6G03048 Aquilegia oxysepala HOM05D006312 ORTHO05D007843 1.4e-51 206.8 151 69.5
CAN.G883.25 Capsicum annuum HOM05D006312 ORTHO05D007843 4.0e-51 205.3 187 62.6
CsaV3_6G052950 Cucumis sativus L. HOM05D006312 ORTHO05D007843 4.0e-51 205.3 133 75.2
Hma1.2p1_0034F.1_g021580 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 6.8e-51 204.5 184 64.7
Phvul.001G155800 Phaseolus vulgaris HOM05D006312 ORTHO05D007843 6.8e-51 204.5 153 68.6
Potri.001G455900 Populus trichocarpa HOM05D006312 ORTHO05D007843 6.8e-51 204.5 150 69.3
Cpa.g.sc178.37 Carica papaya HOM05D006312 ORTHO05D007843 8.9e-51 204.1 189 59.8
MD02G1107600 Malus domestica HOM05D006312 ORTHO05D007843 1.5e-50 203.4 142 73.2
Ciclev10012864m.g Citrus clementina HOM05D006312 ORTHO05D007843 2.6e-50 202.6 190 62.1
Sabra16G0308500 Salix brachista HOM05D006312 ORTHO05D007843 2.6e-50 202.6 135 73.3
Solyc02g068270.4 Solanum lycopersicum HOM05D006312 ORTHO05D007843 3.4e-50 202.2 189 62.4
Sc10g0004590 Simmondsia chinensis HOM05D006312 ORTHO05D007843 4.4e-50 201.8 173 62.4
Atru.chr2.1887 Acer truncatum HOM05D006312 ORTHO05D007843 7.5e-50 201.1 134 74.6
AT3G51510 Arabidopsis thaliana HOM05D006312 ORTHO05D007843 9.8e-50 200.7 135 75.6
Sopen02g017370 Solanum pennellii HOM05D006312 ORTHO05D007843 9.8e-50 200.7 190 62.1
Cc07_g12330 Coffea canephora HOM05D006312 ORTHO05D007843 1.3e-49 200.3 183 63.4
THA.LOC104808852 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 1.3e-49 200.3 142 72.5
TPR.G19116 Trifolium pratense HOM05D006312 ORTHO05D007843 1.7e-49 199.9 132 74.2
AL5G31950 Arabidopsis lyrata HOM05D006312 ORTHO05D007843 2.2e-49 199.5 132 76.5
CANSAT21G2119 Cannabis sativa HOM05D006312 ORTHO05D007843 2.2e-49 199.5 192 57.8
Dinv28290 Davidia involucrata HOM05D006312 ORTHO05D007843 2.2e-49 199.5 182 63.7
ClCG01G025710 Citrullus lanatus HOM05D006312 ORTHO05D007843 2.9e-49 199.1 144 68.1
Glyma.19G160500 Glycine max HOM05D006312 ORTHO05D007843 3.7e-49 198.7 137 73.7
CARHR161090 Cardamine hirsuta HOM05D006312 ORTHO05D007843 4.9e-49 198.4 164 67.1
ATR0605G230 Amborella trichopoda HOM05D006312 ORTHO05D007843 6.4e-49 198.0 126 77.0
C08p26760 Brassica napus HOM05D006312 ORTHO05D007843 6.4e-49 198.0 136 75.0
BolC8t50289H Brassica oleracea HOM05D006312 ORTHO05D007843 6.4e-49 198.0 136 75.0
Nitab4.5_0003141g0020 Nicotiana tabacum HOM05D006312 ORTHO05D007843 8.3e-49 197.6 180 62.2
RcHm_v2.0_Chr2g0096661 Rosa chinensis HOM05D006312 ORTHO05D007843 1.4e-48 196.8 153 66.0
C01p29030 Brassica napus HOM05D006312 ORTHO05D007843 1.9e-48 196.4 155 65.8
BolC1t02835H Brassica oleracea HOM05D006312 ORTHO05D007843 1.9e-48 196.4 155 65.8
A01p23400 Brassica napus HOM05D006312 ORTHO05D007843 3.2e-48 195.7 146 68.5
BraA01t02247Z Brassica rapa HOM05D006312 ORTHO05D007843 3.2e-48 195.7 146 68.5
Dinv24398 Davidia involucrata HOM05D006312 ORTHO05D007843 3.2e-48 195.7 181 63.0
THA.LOC104815359 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 3.2e-48 195.7 145 73.1
ECA246G0189 Erigeron canadensis HOM05D006312 ORTHO05D007843 4.1e-48 195.3 172 62.8
BraA09t39926Z Brassica rapa HOM05D006312 ORTHO05D007843 5.4e-48 194.9 135 74.8
Nitab4.5_0003878g0040 Nicotiana tabacum HOM05D006312 ORTHO05D007843 5.4e-48 194.9 180 61.7
Carub.0005s1789 Capsella rubella HOM05D006312 ORTHO05D007843 7.0e-48 194.5 180 59.4
BcaNung00380 Brassica carinata HOM05D006312 ORTHO05D007843 9.2e-48 194.1 130 74.6
AUR62032612 Chenopodium quinoa HOM05D006312 ORTHO05D007843 9.2e-48 194.1 118 78.8
BcaB01g00508 Brassica carinata HOM05D006312 ORTHO05D007843 1.2e-47 193.7 170 62.9
A09p44660 Brassica napus HOM05D006312 ORTHO05D007843 1.2e-47 193.7 136 74.3
AUR62031725 Chenopodium quinoa HOM05D006312 ORTHO05D007843 1.2e-47 193.7 118 78.0
EL10Ac2g02752 Beta vulgaris HOM05D006312 ORTHO05D007843 1.6e-47 193.4 130 72.3
Thhalv10010756m.g Eutrema salsugineum HOM05D006312 ORTHO05D007843 1.6e-47 193.4 164 64.6
HanXRQChr16g0532211 Helianthus annuus HOM05D006312 ORTHO05D007843 1.6e-47 193.4 150 69.3
Psat3g060840 Pisum sativum HOM05D006312 ORTHO05D007843 1.6e-47 193.4 183 59.0
Sp5g10730 Schrenkiella parvula HOM05D006312 ORTHO05D007843 1.6e-47 193.4 130 74.6
TWI34G0319 Tripterygium wilfordii HOM05D006312 ORTHO05D007843 6.0e-47 191.4 184 60.3
Lj1g0018795 Lotus japonicus HOM05D006312 ORTHO05D007843 7.8e-47 191.0 133 71.4
Oeu024786.1 Olea europaea HOM05D006312 ORTHO05D007843 1.7e-46 189.9 196 58.7
Potri.011G146200 Populus trichocarpa HOM05D006312 ORTHO05D007843 1.7e-46 189.9 114 75.4
DCAR_016700 Daucus carota HOM05D006312 ORTHO05D007843 3.0e-46 189.1 140 67.9
FvH4_1g09790 Fragaria vesca HOM05D006312 ORTHO05D007843 5.0e-46 188.3 151 66.2
FAN23G3058 Fragaria x ananassa HOM05D006312 ORTHO05D007843 6.6e-46 188.0 149 66.4
FAN28G0218 Fragaria x ananassa HOM05D006312 ORTHO05D007843 8.6e-46 187.6 149 66.4
Peaxi162Scf00981g00214 Petunia axillaris HOM05D006312 ORTHO05D007843 8.6e-46 187.6 183 59.6
PSO541G2566 Papaver somniferum HOM05D006312 ORTHO05D007843 1.1e-45 187.2 162 63.0
QL06p053470 Quercus lobata HOM05D006312 ORTHO05D007843 1.1e-45 187.2 189 58.7
PSO675G2564 Papaver somniferum HOM05D006312 ORTHO05D007843 1.5e-45 186.8 154 63.6
FAN19G0451 Fragaria x ananassa HOM05D006312 ORTHO05D007843 1.9e-45 186.4 151 65.6
SEGI_12518 Sequoiadendron giganteum HOM05D006312 ORTHO05D007843 3.3e-45 185.7 155 63.2
FAN23G0139 Fragaria x ananassa HOM05D006312 ORTHO05D007843 4.3e-45 185.3 151 64.9
FAN26G2993 Fragaria x ananassa HOM05D006312 ORTHO05D007843 4.3e-45 185.3 151 64.9
Medtr7g095930 Medicago truncatula HOM05D006312 ORTHO05D007843 2.1e-44 183.0 183 57.9
SGA_v2.0_scaffold132G34566 Striga asiatica HOM05D006312 ORTHO05D007843 3.6e-44 182.2 137 68.6
vmacro18480 Vaccinium macrocarpon HOM05D006312 ORTHO05D007843 8.1e-44 181.0 164 67.7
SalBow5G1176 Salvia bowleyana HOM05D006312 ORTHO05D007843 1.1e-43 180.6 178 57.9
HPP92_005603 Vanilla planifolia HOM05D006312 ORTHO05D007843 4.0e-43 178.7 150 61.3
MSTRG.3652 Avicennia marina HOM05D006312 ORTHO05D007843 1.2e-42 177.2 143 65.7
CiPaw.08G182900 Carya illinoinensis HOM05D006312 ORTHO05D007843 1.2e-42 177.2 114 78.1
Migut.K01209 Erythranthe guttata HOM05D006312 ORTHO05D007843 1.2e-42 177.2 182 56.0
FAN23G0893 Fragaria x ananassa HOM05D006312 ORTHO05D007843 9.8e-42 174.1 105 78.1
Zm00001eb291320 Zea mays HOM05D006312 ORTHO05D007843 2.2e-41 172.9 135 63.7
Lalb_Chr01g0019941 Lupinus albus HOM05D006312 ORTHO05D007843 1.1e-40 170.6 124 71.0
Os05g0490900 Oryza sativa ssp. japonica HOM05D006312 ORTHO05D007843 3.5e-39 165.6 132 66.7
Lj2A507T48 Lonicera japonica HOM05D006312 ORTHO05D007843 1.0e-38 164.1 156 60.9
CDE07G0026 Ceratophyllum demersum HOM05D006312 ORTHO05D007843 1.7e-38 163.3 171 57.9
CSS0018042 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 8.6e-38 161.0 180 57.2
Haze_03648 Corylus avellana HOM05D006312 ORTHO05D007843 1.5e-37 160.2 153 60.1
Nn6g34643 Nelumbo nucifera HOM05D006312 ORTHO05D007843 2.5e-37 159.5 163 58.9
MD15G1226900 Malus domestica HOM05D006312 ORTHO05D007843 3.3e-37 159.1 115 70.4
Hma1.2p1_0034F.1_g021590 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 4.3e-37 158.7 120 71.7
unitig_748.g7258 Utricularia gibba HOM05D006312 ORTHO05D007843 3.1e-35 152.5 132 62.1
GSVIVG01026613001 Vitis vinifera HOM05D006312 ORTHO05D007843 4.0e-35 152.1 88 81.8
Ah.12g058670 Amaranthus hybridus HOM05D006312 ORTHO05D007843 2.9e-33 146.0 109 67.0
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 5.4e-32 141.7 120 62.5
SMO356G0733 Selaginella moellendorffii HOM05D006312 ORTHO05D007843 7.1e-32 141.4 109 57.8
AagrBONN_evm.TU.Sc2ySwM_117.3170 Anthoceros agrestis HOM05D006312 ORTHO05D007843 1.3e-30 137.1 114 55.3
CBR_g16852 Chara braunii HOM05D006312 ORTHO05D007843 1.5e-29 133.7 138 50.7
Mapoly0072s0008 Marchantia polymorpha HOM05D006312 ORTHO05D007843 5.6e-29 131.7 188 42.0
Pp3c12_25230 Physcomitrium patens HOM05D006312 ORTHO05D007843 5.8e-26 121.7 182 41.8
Aa31LG10G3290 Aethionema arabicum HOM05D001371 ORTHO05D001319 4.9e-17 92.0 74 67.6
Cre16.g679300 Chlamydomonas reinhardtii HOM05D006312 ORTHO05D007843 6.4e-17 91.7 121 41.3
MCO03G312 Micromonas commoda HOM05D006312 ORTHO05D007843 1.6e-15 87.0 98 45.9
CSS0013138 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 3.6e-12 75.9 63 63.5
Manes.01G158400 Manihot esculenta HOM05D006312 ORTHO05D007843 1.0e-06 57.8 65 53.8
PRCOL_00002065 Prasinoderma coloniale HOM05D006312 ORTHO05D007843 1.0e-06 57.8 81 43.2


User provided reference genes

Program Settings