Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 1.0e-48 196.8 128 100.0
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 5.7e-28 127.9 117 76.1
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 2.2e-27 125.9 128 60.2
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 4.1e-26 121.7 90 72.2
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 5.3e-26 121.3 125 56.8
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 1.5e-25 119.8 83 75.9
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.5e-25 118.2 84 75.0
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 1.0e-24 117.1 91 72.5
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.7e-24 116.3 81 77.8
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 6.5e-24 114.4 79 81.0
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 8.5e-24 114.0 90 70.0
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 8.5e-24 114.0 84 75.0
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 1.1e-23 113.6 112 67.9
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 1.1e-23 113.6 88 75.0
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.1e-23 113.6 81 75.3
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 1.1e-23 113.6 84 77.4
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.9e-23 112.8 88 72.7
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.9e-23 112.8 88 72.7
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 7.2e-23 110.9 83 72.3
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 1.2e-22 110.2 79 77.2
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 1.2e-22 110.2 79 77.2
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 1.2e-22 110.2 121 57.0
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.2e-22 110.2 83 72.3
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.6e-22 109.8 84 71.4
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 2.1e-22 109.4 88 70.5
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 3.6e-22 108.6 90 70.0
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 4.7e-22 108.2 89 70.8
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 6.1e-22 107.8 86 68.6
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 6.1e-22 107.8 125 53.6
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 6.1e-22 107.8 90 72.2
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 8.0e-22 107.5 89 68.5
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 1.4e-21 106.7 86 70.9
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 1.4e-21 106.7 80 76.2
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 1.8e-21 106.3 125 54.4
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.3e-21 105.9 124 54.8
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 3.0e-21 105.5 83 68.7
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 3.0e-21 105.5 83 74.7
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 4.0e-21 105.1 96 66.7
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 4.0e-21 105.1 86 69.8
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 6.7e-21 104.4 88 70.5
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 8.8e-21 104.0 92 68.5
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 1.1e-20 103.6 90 68.9
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 1.1e-20 103.6 85 74.1
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 1.5e-20 103.2 83 67.5
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 1.5e-20 103.2 83 67.5
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 2.6e-20 102.4 83 69.9
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 3.3e-20 102.1 85 65.9
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 4.4e-20 101.7 89 67.4
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 4.4e-20 101.7 115 57.4
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 5.7e-20 101.3 90 64.4
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 5.7e-20 101.3 90 65.6
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 1.3e-19 100.1 88 69.3
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.7e-19 99.8 95 61.1
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 1.7e-19 99.8 87 66.7
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 1.7e-19 99.8 80 70.0
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 2.2e-19 99.4 90 70.0
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 3.7e-19 98.6 126 52.4
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 4.8e-19 98.2 88 67.0
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 6.3e-19 97.8 86 67.4
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 6.3e-19 97.8 85 65.9
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 6.3e-19 97.8 73 68.5
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 8.2e-19 97.4 88 64.8
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 1.1e-18 97.1 79 72.2
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 1.1e-18 97.1 84 67.9
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 1.1e-18 97.1 80 68.8
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 1.1e-18 97.1 86 64.0
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 1.4e-18 96.7 92 67.4
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.4e-18 96.7 121 53.7
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 1.8e-18 96.3 89 65.2
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 4.1e-18 95.1 122 58.2
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 4.1e-18 95.1 89 65.2
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 4.1e-18 95.1 92 60.9
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 5.3e-18 94.7 89 64.0
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 7.0e-18 94.4 79 65.8
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 9.1e-18 94.0 90 64.4
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 1.2e-17 93.6 73 71.2
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 1.2e-17 93.6 88 67.0
Solyc03g096770.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.2e-17 93.6 120 52.5
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 1.6e-17 93.2 81 64.2
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 1.6e-17 93.2 84 65.5
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 1.6e-17 93.2 85 60.0
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 2.0e-17 92.8 92 65.2
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 2.6e-17 92.4 83 62.7
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 2.6e-17 92.4 89 65.2
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 2.6e-17 92.4 88 64.8
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 5.9e-17 91.3 84 65.5
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 7.7e-17 90.9 85 58.8
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 7.7e-17 90.9 84 64.3
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 1.0e-16 90.5 84 59.5
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 1.0e-16 90.5 83 62.7
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 1.3e-16 90.1 73 71.2
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 1.7e-16 89.7 89 58.4
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 3.8e-16 88.6 75 69.3
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 3.8e-16 88.6 69 65.2
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 3.8e-16 88.6 77 66.2
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 3.8e-16 88.6 124 50.0
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 5.0e-16 88.2 63 71.4
Nn3g18090 Nelumbo nucifera HOM05D003381 ORTHO05D003880 6.5e-16 87.8 83 66.3
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 6.5e-16 87.8 83 63.9
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 8.5e-16 87.4 82 63.4
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.1e-15 87.0 83 60.2
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 1.1e-15 87.0 89 59.6
vmacro06476 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 1.1e-15 87.0 110 56.4
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.5e-15 86.7 79 63.3
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 1.9e-15 86.3 69 66.7
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 1.9e-15 86.3 77 66.2
vmacro06477 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 2.5e-15 85.9 126 51.6
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 5.5e-15 84.7 79 62.0
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 9.4e-15 84.0 82 61.0
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 1.2e-14 83.6 69 71.0
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 1.2e-14 83.6 92 62.0
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 1.6e-14 83.2 54 81.5
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.6e-14 83.2 79 64.6
Lsat_1_v5_gn_8_4241 Lactuca sativa HOM05D003381 ORTHO05D003880 1.6e-14 83.2 89 58.4
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 2.7e-14 82.4 86 61.6
PSO017G3293 Papaver somniferum HOM05D003381 ORTHO05D003880 3.6e-14 82.0 79 60.8
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 4.7e-14 81.6 79 63.3
Eucgr.K00482 Eucalyptus grandis HOM05D003381 ORTHO05D003880 8.0e-14 80.9 89 60.7
Eucgr.K00530 Eucalyptus grandis HOM05D003381 ORTHO05D003880 8.0e-14 80.9 89 60.7
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 1.4e-13 80.1 79 62.0
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 2.3e-13 79.3 90 55.6
ATR0579G061 Amborella trichopoda HOM05D003381 ORTHO05D003880 4.0e-13 78.6 82 54.9
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 5.2e-13 78.2 79 60.8
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 5.2e-13 78.2 79 60.8
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 5.2e-13 78.2 79 59.5
MBI04_g09823_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 2.0e-12 76.3 80 58.8
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 3.4e-12 75.5 84 59.5
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 5.7e-12 74.7 78 60.3
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 1.3e-11 73.6 110 48.2
QL11p009417 Quercus lobata HOM05D003381 ORTHO05D003880 1.3e-11 73.6 78 62.8
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 1.3e-11 73.6 73 60.3
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 3.7e-11 72.0 90 51.1
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 4.8e-11 71.6 73 58.9
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 1.1e-10 70.5 79 57.0
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.4e-10 70.1 73 57.5
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 2.4e-10 69.3 73 57.5
Peaxi162Scf01650g00008 Petunia axillaris HOM05D003381 ORTHO05D003880 2.4e-10 69.3 125 41.6
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 3.1e-10 68.9 82 48.8
AL5G29420 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 5.4e-10 68.2 73 57.5
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 7.0e-10 67.8 73 53.4
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 7.0e-10 67.8 73 52.1
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 9.1e-10 67.4 73 54.8
BcaC07g39419 Brassica carinata HOM05D003381 ORTHO05D003880 9.1e-10 67.4 78 52.6
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 9.1e-10 67.4 73 56.2
A06p18190 Brassica napus HOM05D003381 ORTHO05D003880 1.2e-09 67.0 73 56.2
BraA06t24903Z Brassica rapa HOM05D003381 ORTHO05D003880 1.2e-09 67.0 73 56.2
Sp5g12540 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.2e-09 67.0 73 54.8
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 1.6e-09 66.6 73 56.2
Peaxi162Scf00542g00013 Petunia axillaris HOM05D003381 ORTHO05D003880 1.6e-09 66.6 53 71.7
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.6e-09 66.6 73 53.4
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 2.0e-09 66.2 73 53.4
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 2.0e-09 66.2 73 53.4
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 2.0e-09 66.2 73 53.4
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 2.0e-09 66.2 73 53.4
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 2.0e-09 66.2 73 53.4
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 2.0e-09 66.2 73 53.4
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 2.7e-09 65.9 73 53.4
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 2.7e-09 65.9 78 51.3
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 2.7e-09 65.9 73 52.1
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 3.5e-09 65.5 73 52.1
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 3.5e-09 65.5 78 51.3
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 3.5e-09 65.5 78 51.3
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 3.5e-09 65.5 73 53.4
CDE04G0378 Ceratophyllum demersum HOM05D003381 ORTHO05D003880 3.5e-09 65.5 55 65.5
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 4.5e-09 65.1 73 53.4
Zm00001eb043810 Zea mays HOM05D003381 ORTHO05D003880 4.5e-09 65.1 73 52.1
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 7.7e-09 64.3 73 53.4
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 1.0e-08 63.9 73 50.7
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 1.3e-08 63.5 84 45.2
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 1.3e-08 63.5 84 45.2
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 1.3e-08 63.5 84 45.2
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 1.3e-08 63.5 84 45.2
AT5G24655 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 2.2e-08 62.8 73 52.1
A06p18160 Brassica napus HOM05D003381 ORTHO05D003880 2.2e-08 62.8 78 48.7
BcaC09g49963 Brassica carinata HOM05D003381 ORTHO05D003880 3.8e-08 62.0 54 61.1
CiPaw.06G038100 Carya illinoinensis HOM05D003381 ORTHO05D003880 3.8e-08 62.0 87 52.9
Thecc.03G212300 Theobroma cacao HOM05D003381 ORTHO05D003880 3.8e-08 62.0 84 51.2
AL6G36260 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 6.5e-08 61.2 73 50.7
SEGI_37007 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 8.5e-08 60.8 79 49.4
CDE09G1369 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 1.9e-07 59.7 79 48.1
CARHR158580 Cardamine hirsuta HOM05D003381 ORTHO05D003880 2.5e-07 59.3 73 53.4
Duzib205G0505 Durio zibethinus HOM05D003381 ORTHO05D003880 9.4e-07 57.4 79 49.4
MBI04_g21753_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 2.1e-06 56.2 56 62.5
SEGI_09109 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 2.1e-06 56.2 79 48.1
Os10g0509600 Oryza sativa ssp. japonica HOM05D003381 ORTHO05D003880 2.7e-06 55.8 71 49.3
Zm00001eb231110 Zea mays HOM05D003381 ORTHO05D003880 4.7e-06 55.1 76 48.7
SEGI_32370 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 8.0e-06 54.3 79 46.8


User provided reference genes

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