Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005272 Camellia sinensis var. sinensis HOM05D002012 ORTHO05D001992 4.8e-61 237.7 120 100.0
CSS0019146 Camellia sinensis var. sinensis HOM05D002012 ORTHO05D001992 9.1e-28 127.1 119 61.3
CSS0018876 Camellia sinensis var. sinensis HOM05D002012 ORTHO05D001992 1.0e-26 123.6 120 61.7
Lj7C686G2 Lonicera japonica HOM05D002012 ORTHO05D001992 2.2e-26 122.5 127 55.1
Actinidia30209 Actinidia chinensis HOM05D002012 ORTHO05D001992 8.5e-26 120.6 105 64.8
CSS0007339 Camellia sinensis var. sinensis HOM05D002012 ORTHO05D001992 1.9e-25 119.4 120 61.7
Dinv25565 Davidia involucrata HOM05D002012 ORTHO05D001992 7.2e-25 117.5 85 70.6
GSVIVG01015094001 Vitis vinifera HOM05D002012 ORTHO05D001992 1.6e-24 116.3 85 69.4
Cc06_g12050 Coffea canephora HOM05D002012 ORTHO05D001992 4.7e-24 114.8 105 61.0
Dinv42379 Davidia involucrata HOM05D002012 ORTHO05D001992 1.0e-23 113.6 85 70.6
Sc08g0008860 Simmondsia chinensis HOM05D002012 ORTHO05D001992 5.2e-23 111.3 85 68.2
Sc08g0009350 Simmondsia chinensis HOM05D002012 ORTHO05D001992 5.2e-23 111.3 85 68.2
PGR142G4458 Punica granatum HOM05D002012 ORTHO05D001992 2.6e-22 109.0 105 59.0
Haze_25988 Corylus avellana HOM05D002012 ORTHO05D001992 3.3e-22 108.6 105 59.0
Haze_25996 Corylus avellana HOM05D002012 ORTHO05D001992 3.3e-22 108.6 105 59.0
RcHm_v2.0_Chr2g0094551 Rosa chinensis HOM05D002012 ORTHO05D001992 3.3e-22 108.6 105 57.1
CANSAT56G2451 Cannabis sativa HOM05D002012 ORTHO05D001992 4.4e-22 108.2 85 65.9
QL11p000520 Quercus lobata HOM05D002012 ORTHO05D001992 5.7e-22 107.8 85 65.9
THA.LOC104808888 Tarenaya hassleriana HOM05D002012 ORTHO05D001992 9.7e-22 107.1 85 64.7
TAR636G1422 Trochodendron aralioides HOM05D002012 ORTHO05D001992 9.7e-22 107.1 105 59.0
FvH4_1g08450 Fragaria vesca HOM05D002012 ORTHO05D001992 1.7e-21 106.3 85 63.5
FAN19G0643 Fragaria x ananassa HOM05D002012 ORTHO05D001992 1.7e-21 106.3 85 63.5
FAN23G2131 Fragaria x ananassa HOM05D002012 ORTHO05D001992 1.7e-21 106.3 85 63.5
FAN26G1695 Fragaria x ananassa HOM05D002012 ORTHO05D001992 1.7e-21 106.3 85 63.5
Nitab4.5_0000343g0100 Nicotiana tabacum HOM05D002012 ORTHO05D001992 1.7e-21 106.3 85 65.9
Medtr2g041470 Medicago truncatula HOM05D002012 ORTHO05D001992 2.2e-21 105.9 85 67.1
Cfa003016 Carpinus fangiana HOM05D002012 ORTHO05D001992 3.7e-21 105.1 105 58.1
Oeu063415.1 Olea europaea HOM05D002012 ORTHO05D001992 3.7e-21 105.1 105 57.1
TAR624G1209 Trochodendron aralioides HOM05D002012 ORTHO05D001992 3.7e-21 105.1 85 68.2
Duzib168G1258 Durio zibethinus HOM05D002012 ORTHO05D001992 4.8e-21 104.8 85 68.2
ECA234G2093 Erigeron canadensis HOM05D002012 ORTHO05D001992 4.8e-21 104.8 85 64.7
Lj9A280T16 Lonicera japonica HOM05D002012 ORTHO05D001992 4.8e-21 104.8 85 63.5
Migut.J00935 Erythranthe guttata HOM05D002012 ORTHO05D001992 6.3e-21 104.4 105 58.1
FAN28G1411 Fragaria x ananassa HOM05D002012 ORTHO05D001992 8.3e-21 104.0 85 62.4
Nitab4.5_0008382g0010 Nicotiana tabacum HOM05D002012 ORTHO05D001992 8.3e-21 104.0 85 64.7
Peaxi162Scf00127g00035 Petunia axillaris HOM05D002012 ORTHO05D001992 8.3e-21 104.0 85 64.7
Ca_26331_v3 Cicer arietinum L. HOM05D002012 ORTHO05D001992 1.1e-20 103.6 85 65.9
Sed0011181 Sechium edule HOM05D002012 ORTHO05D001992 1.1e-20 103.6 105 57.1
FAN26G0159 Fragaria x ananassa HOM05D002012 ORTHO05D001992 1.4e-20 103.2 85 62.4
Nn8g38672 Nelumbo nucifera HOM05D002012 ORTHO05D001992 1.8e-20 102.8 85 68.2
Thecc.09G078800 Theobroma cacao HOM05D002012 ORTHO05D001992 1.8e-20 102.8 105 59.0
Aqoxy7G04080 Aquilegia oxysepala HOM05D002012 ORTHO05D001992 2.4e-20 102.4 85 64.7
CAN.G258.8 Capsicum annuum HOM05D002012 ORTHO05D001992 2.4e-20 102.4 84 65.5
Phvul.009G227900 Phaseolus vulgaris HOM05D002012 ORTHO05D001992 2.4e-20 102.4 85 65.9
HanXRQChr10g0319671 Helianthus annuus HOM05D002012 ORTHO05D001992 3.1e-20 102.1 105 56.2
Sed0014285 Sechium edule HOM05D002012 ORTHO05D001992 3.1e-20 102.1 105 56.2
CiPaw.03G207500 Carya illinoinensis HOM05D002012 ORTHO05D001992 4.1e-20 101.7 85 63.5
TWI63G1054 Tripterygium wilfordii HOM05D002012 ORTHO05D001992 4.1e-20 101.7 85 63.5
TWI63G1275 Tripterygium wilfordii HOM05D002012 ORTHO05D001992 4.1e-20 101.7 85 63.5
vmacro17189 Vaccinium macrocarpon HOM05D002012 ORTHO05D001992 4.1e-20 101.7 104 59.6
Atru.chr7.1695 Acer truncatum HOM05D002012 ORTHO05D001992 5.3e-20 101.3 85 62.4
ClCG11G001450 Citrullus lanatus HOM05D002012 ORTHO05D001992 5.3e-20 101.3 106 57.5
Solyc07g041660.4 Solanum lycopersicum HOM05D002012 ORTHO05D001992 5.3e-20 101.3 85 62.4
MELO3C004651.2 Cucumis melo HOM05D002012 ORTHO05D001992 7.0e-20 100.9 106 56.6
CsaV3_2G001170 Cucumis sativus L. HOM05D002012 ORTHO05D001992 7.0e-20 100.9 106 56.6
Lj6g0020899 Lotus japonicus HOM05D002012 ORTHO05D001992 7.0e-20 100.9 86 64.0
RhsimUnG0192400 Rhododendron simsii HOM05D002012 ORTHO05D001992 7.0e-20 100.9 84 66.7
HanXRQChr12g0354321 Helianthus annuus HOM05D002012 ORTHO05D001992 9.1e-20 100.5 106 56.6
SGA_v2.0_scaffold91G28092 Striga asiatica HOM05D002012 ORTHO05D001992 1.2e-19 100.1 105 54.3
TWI34G1750 Tripterygium wilfordii HOM05D002012 ORTHO05D001992 1.6e-19 99.8 85 62.4
Glyma.15G176600 Glycine max HOM05D002012 ORTHO05D001992 2.0e-19 99.4 87 65.5
Psat1g133640 Pisum sativum HOM05D002012 ORTHO05D001992 2.0e-19 99.4 96 59.4
Prupe.7G200900 Prunus persica HOM05D002012 ORTHO05D001992 2.0e-19 99.4 85 61.2
CiPaw.04G144400 Carya illinoinensis HOM05D002012 ORTHO05D001992 2.7e-19 99.0 85 62.4
DCAR_011951 Daucus carota HOM05D002012 ORTHO05D001992 2.7e-19 99.0 85 62.4
Aa31LG9G5250 Aethionema arabicum HOM05D002012 ORTHO05D001992 4.5e-19 98.2 85 61.2
COL.COLO4_18109 Corchorus olitorius HOM05D002012 ORTHO05D001992 5.9e-19 97.8 105 59.0
Eucgr.C00822 Eucalyptus grandis HOM05D002012 ORTHO05D001992 5.9e-19 97.8 105 57.1
Sopen07g021140 Solanum pennellii HOM05D002012 ORTHO05D001992 5.9e-19 97.8 85 61.2
Duzib187G1411 Durio zibethinus HOM05D002012 ORTHO05D001992 7.7e-19 97.4 85 62.4
Glyma.13G109600 Glycine max HOM05D002012 ORTHO05D001992 1.0e-18 97.1 85 61.2
SalBow6G4123 Salvia bowleyana HOM05D002012 ORTHO05D001992 1.0e-18 97.1 105 54.3
Lalb_Chr13g0299491 Lupinus albus HOM05D002012 ORTHO05D001992 1.3e-18 96.7 87 59.8
Glyma.17G050100 Glycine max HOM05D002012 ORTHO05D001992 1.7e-18 96.3 85 61.2
Lj4g0000518 Lotus japonicus HOM05D002012 ORTHO05D001992 1.7e-18 96.3 85 61.2
Ciclev10007498m.g Citrus clementina HOM05D002012 ORTHO05D001992 2.2e-18 95.9 105 53.3
Lalb_Chr07g0181121 Lupinus albus HOM05D002012 ORTHO05D001992 2.2e-18 95.9 87 59.8
Potri.006G143000 Populus trichocarpa HOM05D002012 ORTHO05D001992 2.9e-18 95.5 85 60.0
Gorai.009G035300 Gossypium raimondii HOM05D002012 ORTHO05D001992 5.0e-18 94.7 105 55.2
MD00G1142500 Malus domestica HOM05D002012 ORTHO05D001992 5.0e-18 94.7 85 61.2
MD02G1089000 Malus domestica HOM05D002012 ORTHO05D001992 5.0e-18 94.7 85 61.2
PSO135G0920 Papaver somniferum HOM05D002012 ORTHO05D001992 5.0e-18 94.7 85 60.0
AT5G35560 Arabidopsis thaliana HOM05D002012 ORTHO05D001992 6.5e-18 94.4 86 59.3
MSTRG.19467 Avicennia marina HOM05D002012 ORTHO05D001992 6.5e-18 94.4 105 52.4
Glyma.09G068800 Glycine max HOM05D002012 ORTHO05D001992 6.5e-18 94.4 87 63.2
PSO724G0857 Papaver somniferum HOM05D002012 ORTHO05D001992 6.5e-18 94.4 85 58.8
EL10Ac8g19105 Beta vulgaris HOM05D002012 ORTHO05D001992 8.5e-18 94.0 105 54.3
Thhalv10003439m.g Eutrema salsugineum HOM05D002012 ORTHO05D001992 8.5e-18 94.0 86 59.3
MD15G1216100 Malus domestica HOM05D002012 ORTHO05D001992 8.5e-18 94.0 85 58.8
AUR62025192 Chenopodium quinoa HOM05D002012 ORTHO05D001992 1.1e-17 93.6 105 54.3
Gohir.D05G034900 Gossypium hirsutum HOM05D002012 ORTHO05D001992 1.1e-17 93.6 105 54.3
Manes.16G096300 Manihot esculenta HOM05D002012 ORTHO05D001992 1.1e-17 93.6 85 57.6
Medtr4g125480 Medicago truncatula HOM05D002012 ORTHO05D001992 1.1e-17 93.6 85 56.5
Phvul.003G131700 Phaseolus vulgaris HOM05D002012 ORTHO05D001992 1.1e-17 93.6 85 58.8
AUR62028982 Chenopodium quinoa HOM05D002012 ORTHO05D001992 1.5e-17 93.2 115 50.4
VMungo1309G2233 Vigna mungo HOM05D002012 ORTHO05D001992 1.5e-17 93.2 85 62.4
AL7G44380 Arabidopsis lyrata HOM05D002012 ORTHO05D001992 1.9e-17 92.8 86 59.3
CARHR217620 Cardamine hirsuta HOM05D002012 ORTHO05D001992 1.9e-17 92.8 100 52.0
Sabra06G0112000 Salix brachista HOM05D002012 ORTHO05D001992 1.9e-17 92.8 85 57.6
Sp7g06790 Schrenkiella parvula HOM05D002012 ORTHO05D001992 1.9e-17 92.8 85 58.8
VMungo1215G3349 Vigna mungo HOM05D002012 ORTHO05D001992 1.9e-17 92.8 85 58.8
Psat5g098520 Pisum sativum HOM05D002012 ORTHO05D001992 2.5e-17 92.4 96 57.3
Gohir.A05G033400 Gossypium hirsutum HOM05D002012 ORTHO05D001992 3.2e-17 92.0 105 54.3
Oeu020557.1 Olea europaea HOM05D002012 ORTHO05D001992 5.5e-17 91.3 105 52.4
Lsat_1_v5_gn_5_141180 Lactuca sativa HOM05D002012 ORTHO05D001992 7.2e-17 90.9 85 58.8
MBI19_g11833_MAGBIO Magnolia biondii HOM05D002012 ORTHO05D001992 7.2e-17 90.9 105 52.4
Manes.03G039600 Manihot esculenta HOM05D002012 ORTHO05D001992 7.2e-17 90.9 85 55.3
Lalb_Chr11g0074281 Lupinus albus HOM05D002012 ORTHO05D001992 9.4e-17 90.5 85 58.8
TPR.G9457 Trifolium pratense HOM05D002012 ORTHO05D001992 2.1e-16 89.4 85 56.5
BcaC02g09479 Brassica carinata HOM05D002012 ORTHO05D001992 1.0e-15 87.0 87 56.3
C04p43250 Brassica napus HOM05D002012 ORTHO05D001992 1.0e-15 87.0 87 56.3
BolC4t25905H Brassica oleracea HOM05D002012 ORTHO05D001992 1.0e-15 87.0 87 56.3
A04p09750 Brassica napus HOM05D002012 ORTHO05D001992 1.4e-15 86.7 87 56.3
BraA04t16637Z Brassica rapa HOM05D002012 ORTHO05D001992 1.4e-15 86.7 87 56.3
Ah.09g231410 Amaranthus hybridus HOM05D002012 ORTHO05D001992 1.8e-15 86.3 105 51.4
Psat3g018320 Pisum sativum HOM05D002012 ORTHO05D001992 1.8e-15 86.3 84 58.3
unitig_21.g20983 Utricularia gibba HOM05D002012 ORTHO05D001992 2.3e-15 85.9 105 52.4
arahy.Tifrunner.gnm1.ann1.I4CWBG Arachis hypogaea HOM05D002012 ORTHO05D001992 3.0e-15 85.5 85 55.3
arahy.Tifrunner.gnm1.ann1.TG362X Arachis hypogaea HOM05D002012 ORTHO05D001992 3.0e-15 85.5 85 55.3
BcaB06g26946 Brassica carinata HOM05D002012 ORTHO05D001992 4.0e-15 85.1 87 56.3
Psat4g017920 Pisum sativum HOM05D002012 ORTHO05D001992 5.2e-15 84.7 85 54.1
Ca_21316_v3 Cicer arietinum L. HOM05D002012 ORTHO05D001992 1.5e-14 83.2 85 56.5
TPR.G28669 Trifolium pratense HOM05D002012 ORTHO05D001992 2.0e-14 82.8 100 52.0
ECA236G1251 Erigeron canadensis HOM05D002012 ORTHO05D001992 4.4e-14 81.6 105 46.7
MSTRG.26464 Avicennia marina HOM05D002012 ORTHO05D001992 5.7e-14 81.3 85 56.5
Psat0s2767g0040 Pisum sativum HOM05D002012 ORTHO05D001992 1.3e-13 80.1 85 54.1
ATR0598G305 Amborella trichopoda HOM05D002012 ORTHO05D001992 1.7e-13 79.7 105 46.7
CDE07G0836 Ceratophyllum demersum HOM05D002012 ORTHO05D001992 2.8e-13 79.0 85 54.1
Carub.0007s3130 Capsella rubella HOM05D002012 ORTHO05D001992 6.3e-13 77.8 88 50.0
Atru.chr10.170 Acer truncatum HOM05D002012 ORTHO05D001992 2.4e-12 75.9 49 69.4
CDE06G1025 Ceratophyllum demersum HOM05D002012 ORTHO05D001992 7.0e-12 74.3 85 52.9
Lsat_1_v5_gn_8_86401 Lactuca sativa HOM05D002012 ORTHO05D001992 7.0e-12 74.3 106 47.2
DCAR_028322 Daucus carota HOM05D002012 ORTHO05D001992 4.5e-11 71.6 105 46.7
arahy.Tifrunner.gnm1.ann1.H8KNJ8 Arachis hypogaea HOM05D002012 ORTHO05D001992 1.5e-09 66.6 96 49.0
Hund26019 Selenicereus undatus HOM05D002012 ORTHO05D001992 1.9e-09 66.2 105 42.9
arahy.Tifrunner.gnm1.ann1.BD8MJQ Arachis hypogaea HOM05D002012 ORTHO05D001992 7.2e-09 64.3 96 46.9
HanXRQChr06g0178161 Helianthus annuus HOM05D002012 ORTHO05D001992 7.2e-09 64.3 106 43.4
Rhsim04G0079000 Rhododendron simsii HOM05D000879 ORTHO05D002043 7.5e-06 54.3 47 55.3


User provided reference genes

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