Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005263 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D019435 2.7e-33 144.8 77 100.0
CSS0039620 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D019435 5.6e-31 137.1 77 88.3
TWI14G0519 Tripterygium wilfordii HOM05D003980 ORTHO05D005301 7.4e-15 83.6 48 79.2
COL.COLO4_37237 Corchorus olitorius HOM05D003980 ORTHO05D005301 2.8e-14 81.6 56 69.6
Cc04_g05920 Coffea canephora HOM05D003980 ORTHO05D005301 4.8e-14 80.9 54 70.4
GSVIVG01008633001 Vitis vinifera HOM05D003980 ORTHO05D005301 4.8e-14 80.9 56 67.9
Rhsim08G0195900 Rhododendron simsii HOM05D003980 ORTHO05D005301 6.3e-14 80.5 56 60.7
vmacro19166 Vaccinium macrocarpon HOM05D003980 ORTHO05D005301 6.3e-14 80.5 48 77.1
Ciclev10030650m.g Citrus clementina HOM05D003980 ORTHO05D005301 1.4e-13 79.3 56 67.9
HanXRQChr09g0273931 Helianthus annuus HOM05D003980 ORTHO05D005301 1.4e-13 79.3 47 76.6
Potri.015G105000 Populus trichocarpa HOM05D003980 ORTHO05D005301 1.4e-13 79.3 56 66.1
Peaxi162Scf00314g00535 Petunia axillaris HOM05D003980 ORTHO05D005301 4.1e-13 77.8 48 72.9
Actinidia25531 Actinidia chinensis HOM05D003980 ORTHO05D019435 5.3e-13 77.4 51 72.5
HanXRQChr16g0498871 Helianthus annuus HOM05D003980 ORTHO05D005301 6.9e-13 77.0 47 76.6
MD14G1148800 Malus domestica HOM05D003980 ORTHO05D005301 6.9e-13 77.0 49 73.5
Sabra12G0078100 Salix brachista HOM05D003980 ORTHO05D005301 9.1e-13 76.6 56 64.3
SalBow7G4845 Salvia bowleyana HOM05D003980 ORTHO05D005301 9.1e-13 76.6 48 70.8
THA.LOC104821537 Tarenaya hassleriana HOM05D003980 ORTHO05D005301 9.1e-13 76.6 49 73.5
TWI39G0366 Tripterygium wilfordii HOM05D003980 ORTHO05D005301 9.1e-13 76.6 47 76.6
MSTRG.11233 Avicennia marina HOM05D003980 ORTHO05D005301 1.5e-12 75.9 48 70.8
Migut.I00610 Erythranthe guttata HOM05D003980 ORTHO05D005301 1.5e-12 75.9 50 66.0
Duzib205G0834 Durio zibethinus HOM05D003980 ORTHO05D005301 2.0e-12 75.5 54 68.5
Lsat_1_v5_gn_4_84700 Lactuca sativa HOM05D003980 ORTHO05D005301 2.0e-12 75.5 39 82.1
Thecc.03G138500 Theobroma cacao HOM05D003980 ORTHO05D005301 2.0e-12 75.5 54 68.5
ECA232G4466 Erigeron canadensis HOM05D003980 ORTHO05D005301 2.6e-12 75.1 47 74.5
Aa31LG11G3070 Aethionema arabicum HOM05D003980 ORTHO05D005301 3.4e-12 74.7 49 71.4
BcaNung01844 Brassica carinata HOM05D003980 ORTHO05D005301 3.4e-12 74.7 49 71.4
A06p34620 Brassica napus HOM05D003980 ORTHO05D005301 3.4e-12 74.7 49 69.4
C07p43870 Brassica napus HOM05D003980 ORTHO05D005301 3.4e-12 74.7 49 71.4
BolC7t44915H Brassica oleracea HOM05D003980 ORTHO05D005301 3.4e-12 74.7 49 71.4
BraA06t26390Z Brassica rapa HOM05D003980 ORTHO05D005301 3.4e-12 74.7 49 69.4
CANSAT56G3290 Cannabis sativa HOM05D003980 ORTHO05D005301 3.4e-12 74.7 54 68.5
Manes.06G125700 Manihot esculenta HOM05D003980 ORTHO05D005301 3.4e-12 74.7 49 69.4
Nitab4.5_0000663g0190 Nicotiana tabacum HOM05D003980 ORTHO05D005301 3.4e-12 74.7 49 71.4
Sp2g23510 Schrenkiella parvula HOM05D003980 ORTHO05D005301 3.4e-12 74.7 49 71.4
Dinv13736 Davidia involucrata HOM05D003980 ORTHO05D005301 5.9e-12 73.9 47 72.3
Nn4g22168 Nelumbo nucifera HOM05D003980 ORTHO05D005301 5.9e-12 73.9 48 70.8
Potri.012G105800 Populus trichocarpa HOM05D003980 ORTHO05D005301 5.9e-12 73.9 56 62.5
QL10p000901 Quercus lobata HOM05D003980 ORTHO05D005301 5.9e-12 73.9 53 69.8
Solyc03g118350.4 Solanum lycopersicum HOM05D003980 ORTHO05D005301 5.9e-12 73.9 48 72.9
Sopen03g037250 Solanum pennellii HOM05D003980 ORTHO05D005301 5.9e-12 73.9 48 72.9
PGSC0003DMG401014249 Solanum tuberosum HOM05D003980 ORTHO05D005301 5.9e-12 73.9 48 72.9
Thhalv10003616m.g Eutrema salsugineum HOM05D003980 ORTHO05D005301 7.7e-12 73.6 47 72.3
TAR371G0735 Trochodendron aralioides HOM05D003980 ORTHO05D005301 7.7e-12 73.6 48 68.8
Haze_07113 Corylus avellana HOM05D003980 ORTHO05D005301 1.0e-11 73.2 54 64.8
AT5G23720 Arabidopsis thaliana HOM05D003980 ORTHO05D005301 1.3e-11 72.8 47 70.2
Carub.0006s2147 Capsella rubella HOM05D003980 ORTHO05D005301 1.3e-11 72.8 47 70.2
CARHR189830 Cardamine hirsuta HOM05D003980 ORTHO05D005301 1.3e-11 72.8 47 70.2
Cpa.g.sc4.108 Carica papaya HOM05D003980 ORTHO05D005301 1.3e-11 72.8 39 82.1
Gohir.A09G248100 Gossypium hirsutum HOM05D003980 ORTHO05D005301 1.3e-11 72.8 54 64.8
Gohir.D09G248900 Gossypium hirsutum HOM05D003980 ORTHO05D005301 1.3e-11 72.8 54 64.8
Gorai.006G273300 Gossypium raimondii HOM05D003980 ORTHO05D005301 1.3e-11 72.8 54 64.8
Cfa018720 Carpinus fangiana HOM05D003980 ORTHO05D005301 1.7e-11 72.4 54 64.8
Glyma.05G201200 Glycine max HOM05D003980 ORTHO05D005301 1.7e-11 72.4 53 58.5
Nn3g16303 Nelumbo nucifera HOM05D003980 ORTHO05D005301 1.7e-11 72.4 48 66.7
Nitab4.5_0002450g0020 Nicotiana tabacum HOM05D003980 ORTHO05D005301 1.7e-11 72.4 48 70.8
Prupe.5G143400 Prunus persica HOM05D003980 ORTHO05D005301 1.7e-11 72.4 48 70.8
EL10Ac5g11306 Beta vulgaris HOM05D003980 ORTHO05D005301 2.2e-11 72.0 39 76.9
CSS0000982 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 2.2e-11 72.0 44 70.5
Sc04g0000260 Simmondsia chinensis HOM05D003980 ORTHO05D005301 2.2e-11 72.0 48 64.6
SGA_v2.0_scaffold143G35744 Striga asiatica HOM05D003980 ORTHO05D005301 2.2e-11 72.0 46 67.4
Ah.02g114660 Amaranthus hybridus HOM05D003980 ORTHO05D005301 2.9e-11 71.6 54 61.1
Glyma.08G008600 Glycine max HOM05D003980 ORTHO05D005301 2.9e-11 71.6 53 58.5
Sabra15G0125200 Salix brachista HOM05D003980 ORTHO05D005301 2.9e-11 71.6 45 71.1
Atru.chr6.1901 Acer truncatum HOM05D003980 ORTHO05D005301 3.8e-11 71.2 56 62.5
unitig_22.g6271 Utricularia gibba HOM05D003980 ORTHO05D005301 3.8e-11 71.2 42 71.4
AL6G34990 Arabidopsis lyrata HOM05D003980 ORTHO05D005301 5.0e-11 70.9 47 68.1
Lj4g0027174 Lotus japonicus HOM05D003980 ORTHO05D005301 8.5e-11 70.1 53 58.5
Duzib084G0479 Durio zibethinus HOM05D003980 ORTHO05D005301 1.1e-10 69.7 54 64.8
Eucgr.B00073 Eucalyptus grandis HOM05D003980 ORTHO05D005301 1.9e-10 68.9 44 68.2
MD06G1132400 Malus domestica HOM05D003980 ORTHO05D005301 1.9e-10 68.9 49 65.3
Ca_17584_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 3.2e-10 68.2 51 58.8
Lalb_Chr12g0202411 Lupinus albus HOM05D003980 ORTHO05D005301 3.2e-10 68.2 54 51.9
Hund10056 Selenicereus undatus HOM05D003980 ORTHO05D005301 3.2e-10 68.2 39 69.2
Phvul.009G164700 Phaseolus vulgaris HOM05D003980 ORTHO05D005301 4.2e-10 67.8 54 59.3
ATR0693G246 Amborella trichopoda HOM05D003980 ORTHO05D005301 5.5e-10 67.4 52 61.5
CiPaw.11G001400 Carya illinoinensis HOM05D003980 ORTHO05D005301 5.5e-10 67.4 49 65.3
Phvul.002G282600 Phaseolus vulgaris HOM05D003980 ORTHO05D005301 5.5e-10 67.4 56 55.4
RcHm_v2.0_Chr7g0188941 Rosa chinensis HOM05D003980 ORTHO05D005301 5.5e-10 67.4 49 61.2
PGR083G0225 Punica granatum HOM05D003980 ORTHO05D005301 7.2e-10 67.0 57 59.6
TPR.G12812 Trifolium pratense HOM05D003980 ORTHO05D005301 7.2e-10 67.0 54 55.6
arahy.Tifrunner.gnm1.ann1.1NY8SK Arachis hypogaea HOM05D003980 ORTHO05D005301 9.4e-10 66.6 49 61.2
AUR62034771 Chenopodium quinoa HOM05D003980 ORTHO05D005301 1.6e-09 65.9 35 77.1
FvH4_5g09220 Fragaria vesca HOM05D003980 ORTHO05D005301 1.6e-09 65.9 54 55.6
FAN04G0599 Fragaria x ananassa HOM05D003980 ORTHO05D005301 2.1e-09 65.5 48 60.4
FAN08G3345 Fragaria x ananassa HOM05D003980 ORTHO05D005301 2.1e-09 65.5 48 60.4
FAN13G1995 Fragaria x ananassa HOM05D003980 ORTHO05D005301 2.1e-09 65.5 48 60.4
FAN18G3345 Fragaria x ananassa HOM05D003980 ORTHO05D005301 2.1e-09 65.5 48 60.4
MBI19_g26308_MAGBIO Magnolia biondii HOM05D003980 ORTHO05D005301 2.7e-09 65.1 48 60.4
ClCG06G018320 Citrullus lanatus HOM05D003980 ORTHO05D005301 3.6e-09 64.7 48 62.5
CsaV3_1G000110 Cucumis sativus L. HOM05D003980 ORTHO05D005301 3.6e-09 64.7 48 62.5
VMungo0251G0815 Vigna mungo HOM05D003980 ORTHO05D005301 3.6e-09 64.7 46 56.5
CDE05G1848 Ceratophyllum demersum HOM05D003980 ORTHO05D019435 4.6e-09 64.3 41 65.9
Lj1g0007025 Lotus japonicus HOM05D003980 ORTHO05D005301 4.6e-09 64.3 52 59.6
VMungo1309G0598 Vigna mungo HOM05D003980 ORTHO05D005301 4.6e-09 64.3 54 55.6
Glyma.04G200300 Glycine max HOM05D003980 ORTHO05D005301 7.9e-09 63.5 55 56.4
Lj9A485G82 Lonicera japonica HOM05D003980 ORTHO05D005301 1.0e-08 63.2 39 71.8
Medtr8g100000 Medicago truncatula HOM05D003980 ORTHO05D005301 1.0e-08 63.2 37 67.6
arahy.Tifrunner.gnm1.ann1.JJXJ29 Arachis hypogaea HOM05D003980 ORTHO05D005301 1.4e-08 62.8 51 56.9
arahy.Tifrunner.gnm1.ann1.US1BEE Arachis hypogaea HOM05D003980 ORTHO05D005301 1.4e-08 62.8 51 56.9
Ca_10885_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 1.8e-08 62.4 49 59.2
DCAR_021407 Daucus carota HOM05D003980 ORTHO05D005301 3.0e-08 61.6 52 51.9
MELO3C026163.2 Cucumis melo HOM05D003980 ORTHO05D005301 1.1e-07 59.7 49 61.2
VMungo0540G0604 Vigna mungo HOM05D003980 ORTHO05D019435 1.5e-07 59.3 49 55.1
Lalb_Chr13g0297021 Lupinus albus HOM05D003980 ORTHO05D005301 2.0e-07 58.9 40 57.5
Lj5A88T63 Lonicera japonica HOM05D003980 ORTHO05D005301 2.6e-07 58.5 54 55.6
DCAR_025658 Daucus carota HOM05D003980 ORTHO05D005301 4.4e-07 57.8 39 71.8
TPR.G21586 Trifolium pratense HOM05D003980 ORTHO05D005301 5.7e-07 57.4 37 64.9
Ca_16085_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 1.7e-06 55.8 45 57.8
Hund02497 Selenicereus undatus HOM05D003980 ORTHO05D005301 2.8e-06 55.1 39 64.1
Medtr3g498735 Medicago truncatula HOM05D003980 ORTHO05D005301 4.8e-06 54.3 37 64.9
SHI14117 Sapria himalayana HOM05D003980 ORTHO05D019435 4.8e-06 54.3 34 64.7


User provided reference genes

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