Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005224 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D016147 4.1e-33 144.1 68 100.0
CSS0002620 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D016147 1.2e-32 142.5 68 98.5
CSS0014690 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D016147 2.0e-32 141.7 68 98.5
CSS0047603 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D016147 2.9e-31 137.9 68 97.1
CSS0028039 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 9.1e-25 116.3 59 93.2
Actinidia02446 Actinidia chinensis HOM05D002370 ORTHO05D003878 1.6e-24 115.5 59 93.2
Actinidia00351 Actinidia chinensis HOM05D002370 ORTHO05D003878 2.6e-24 114.8 59 93.2
Rhsim11G0149700 Rhododendron simsii HOM05D002370 ORTHO05D003878 2.6e-24 114.8 59 93.2
Oeu028915.2 Olea europaea HOM05D002370 ORTHO05D003878 3.5e-24 114.4 59 91.5
SGA_v2.0_scaffold519G52682 Striga asiatica HOM05D002370 ORTHO05D003878 5.9e-24 113.6 59 91.5
Aqoxy6G01518 Aquilegia oxysepala HOM05D002370 ORTHO05D003878 7.7e-24 113.2 59 91.5
Migut.B00477 Erythranthe guttata HOM05D002370 ORTHO05D003878 1.3e-23 112.5 59 89.8
vmacro01938 Vaccinium macrocarpon HOM05D002370 ORTHO05D003878 1.3e-23 112.5 59 91.5
Dinv09531 Davidia involucrata HOM05D002370 ORTHO05D003878 1.7e-23 112.1 59 89.8
Gohir.A01G009500 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.7e-23 112.1 59 89.8
Nn5g30713 Nelumbo nucifera HOM05D002370 ORTHO05D003878 1.7e-23 112.1 59 88.1
Nitab4.5_0010974g0020 Nicotiana tabacum HOM05D002370 ORTHO05D003878 1.7e-23 112.1 59 89.8
MSTRG.16667 Avicennia marina HOM05D002370 ORTHO05D003878 2.2e-23 111.7 59 89.8
PSO675G3080 Papaver somniferum HOM05D002370 ORTHO05D003878 2.2e-23 111.7 59 88.1
PSO732G0082 Papaver somniferum HOM05D002370 ORTHO05D003878 2.2e-23 111.7 59 88.1
Peaxi162Scf00016g03243 Petunia axillaris HOM05D002370 ORTHO05D003878 2.2e-23 111.7 59 89.8
CSS0026275 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 2.9e-23 111.3 59 89.8
Prupe.8G151300 Prunus persica HOM05D002370 ORTHO05D003878 2.9e-23 111.3 59 89.8
CAN.G606.78 Capsicum annuum HOM05D002370 ORTHO05D003878 3.8e-23 110.9 59 88.1
DCAR_021938 Daucus carota HOM05D002370 ORTHO05D003878 3.8e-23 110.9 59 88.1
Gohir.D01G009100 Gossypium hirsutum HOM05D002370 ORTHO05D003878 3.8e-23 110.9 59 88.1
Gorai.002G011200 Gossypium raimondii HOM05D002370 ORTHO05D003878 3.8e-23 110.9 59 88.1
HanXRQChr04g0107251 Helianthus annuus HOM05D002370 ORTHO05D003878 3.8e-23 110.9 59 88.1
Lsat_1_v5_gn_4_143680 Lactuca sativa HOM05D002370 ORTHO05D003878 3.8e-23 110.9 59 88.1
Cc02_g20160 Coffea canephora HOM05D002370 ORTHO05D003878 5.0e-23 110.5 59 88.1
COL.COLO4_32473 Corchorus olitorius HOM05D002370 ORTHO05D003878 5.0e-23 110.5 59 89.8
DCAR_003604 Daucus carota HOM05D002370 ORTHO05D003878 5.0e-23 110.5 59 88.1
HanXRQChr04g0107281 Helianthus annuus HOM05D002370 ORTHO05D003878 5.0e-23 110.5 59 88.1
PSO541G1630 Papaver somniferum HOM05D002370 ORTHO05D003878 5.0e-23 110.5 59 86.4
PSO675G4735 Papaver somniferum HOM05D002370 ORTHO05D003878 5.0e-23 110.5 59 86.4
Duzib132G1084 Durio zibethinus HOM05D002370 ORTHO05D003878 6.5e-23 110.2 60 86.7
Nitab4.5_0000772g0070 Nicotiana tabacum HOM05D002370 ORTHO05D003878 6.5e-23 110.2 59 88.1
TAR381G0773 Trochodendron aralioides HOM05D002370 ORTHO05D003878 6.5e-23 110.2 59 86.4
Potri.001G289200 Populus trichocarpa HOM05D002370 ORTHO05D003878 8.5e-23 109.8 59 88.1
Solyc01g106770.4 Solanum lycopersicum HOM05D002370 ORTHO05D003878 8.5e-23 109.8 59 86.4
Sopen01g049080 Solanum pennellii HOM05D002370 ORTHO05D003878 8.5e-23 109.8 59 86.4
CiPaw.06G163300 Carya illinoinensis HOM05D002370 ORTHO05D003878 1.1e-22 109.4 57 91.2
Gohir.A12G018200 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.1e-22 109.4 59 88.1
MD00G1031100 Malus domestica HOM05D002370 ORTHO05D003878 1.1e-22 109.4 59 88.1
MD05G1107800 Malus domestica HOM05D002370 ORTHO05D003878 1.1e-22 109.4 59 88.1
Sabra09G0065200 Salix brachista HOM05D002370 ORTHO05D003878 1.1e-22 109.4 59 88.1
PGSC0003DMG401025733 Solanum tuberosum HOM05D002370 ORTHO05D003878 1.1e-22 109.4 59 86.4
Thecc.02G120900 Theobroma cacao HOM05D002370 ORTHO05D003878 1.1e-22 109.4 59 88.1
GSVIVG01037040001 Vitis vinifera HOM05D002370 ORTHO05D003878 1.1e-22 109.4 59 86.4
FvH4_2g03080 Fragaria vesca HOM05D002370 ORTHO05D003878 1.5e-22 109.0 59 88.1
FAN15G3522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.5e-22 109.0 59 88.1
FAN20G2522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.5e-22 109.0 59 88.1
FAN27G1380 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.5e-22 109.0 59 88.1
Potri.009G084500 Populus trichocarpa HOM05D002370 ORTHO05D003878 1.5e-22 109.0 59 88.1
RcHm_v2.0_Chr6g0247951 Rosa chinensis HOM05D002370 ORTHO05D003878 1.5e-22 109.0 59 88.1
TAR625G0640 Trochodendron aralioides HOM05D002370 ORTHO05D003878 1.5e-22 109.0 55 92.7
arahy.Tifrunner.gnm1.ann1.3J1H0B Arachis hypogaea HOM05D002370 ORTHO05D003878 1.9e-22 108.6 59 86.4
arahy.Tifrunner.gnm1.ann1.NYP183 Arachis hypogaea HOM05D002370 ORTHO05D003878 1.9e-22 108.6 59 86.4
arahy.Tifrunner.gnm1.ann1.UC42H8 Arachis hypogaea HOM05D002370 ORTHO05D003878 1.9e-22 108.6 59 86.4
Ciclev10027661m.g Citrus clementina HOM05D002370 ORTHO05D003878 1.9e-22 108.6 59 88.1
ECA232G2594 Erigeron canadensis HOM05D002370 ORTHO05D003878 1.9e-22 108.6 59 86.4
Atru.chr4.144 Acer truncatum HOM05D002370 ORTHO05D003878 2.5e-22 108.2 59 86.4
Atru.chr4.155 Acer truncatum HOM05D002370 ORTHO05D003878 2.5e-22 108.2 59 86.4
CiPaw.05G021600 Carya illinoinensis HOM05D002370 ORTHO05D003878 2.5e-22 108.2 59 86.4
Lj5C222G6 Lonicera japonica HOM05D002370 ORTHO05D003878 2.5e-22 108.2 59 86.4
Gohir.D12G018800 Gossypium hirsutum HOM05D002370 ORTHO05D003878 3.2e-22 107.8 59 86.4
Gorai.008G019100 Gossypium raimondii HOM05D002370 ORTHO05D003878 3.2e-22 107.8 59 86.4
Sc18g0007320 Simmondsia chinensis HOM05D002370 ORTHO05D003878 3.2e-22 107.8 59 84.7
unitig_60.g25464 Utricularia gibba HOM05D002370 ORTHO05D003878 3.2e-22 107.8 59 86.4
ClCG02G007160 Citrullus lanatus HOM05D002370 ORTHO05D003878 4.2e-22 107.5 59 86.4
Haze_10317 Corylus avellana HOM05D002370 ORTHO05D003878 4.2e-22 107.5 59 86.4
MELO3C018533.2 Cucumis melo HOM05D002370 ORTHO05D003878 4.2e-22 107.5 59 86.4
CsaV3_7G007670 Cucumis sativus L. HOM05D002370 ORTHO05D003878 4.2e-22 107.5 59 86.4
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 5.5e-22 107.1 59 86.4
TWI59G1328 Tripterygium wilfordii HOM05D002370 ORTHO05D003878 5.5e-22 107.1 59 86.4
Cpa.g.sc520.2 Carica papaya HOM05D002370 ORTHO05D003878 1.2e-21 105.9 58 86.2
Sed0018886 Sechium edule HOM05D002370 ORTHO05D003878 1.2e-21 105.9 59 83.1
HPP92_016412 Vanilla planifolia HOM05D002370 ORTHO05D003878 1.6e-21 105.5 59 79.7
CANSAT25G3449 Cannabis sativa HOM05D002370 ORTHO05D016147 2.1e-21 105.1 59 84.7
Glyma.01G241300 Glycine max HOM05D002370 ORTHO05D003878 2.1e-21 105.1 59 84.7
Glyma.11G002600 Glycine max HOM05D002370 ORTHO05D003878 2.7e-21 104.8 59 84.7
Manes.07G052660 Manihot esculenta HOM05D002370 ORTHO05D003878 4.7e-21 104.0 59 83.1
SEGI_17280 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 4.7e-21 104.0 59 81.4
Phvul.002G049900 Phaseolus vulgaris HOM05D002370 ORTHO05D003878 6.1e-21 103.6 59 83.1
PGR142G4285 Punica granatum HOM05D002370 ORTHO05D003878 6.1e-21 103.6 59 83.1
VMungo1215G1081 Vigna mungo HOM05D002370 ORTHO05D003878 6.1e-21 103.6 59 83.1
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 8.0e-21 103.2 59 83.1
Lalb_Chr05g0210831 Lupinus albus HOM05D002370 ORTHO05D003878 1.0e-20 102.8 55 89.1
SEGI_12344 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 1.0e-20 102.8 59 81.4
SGA_v2.0_scaffold32G12979 Striga asiatica HOM05D002370 ORTHO05D003878 1.0e-20 102.8 59 84.7
BcaB02g11126 Brassica carinata HOM05D002370 ORTHO05D003878 1.4e-20 102.4 59 81.4
BcaC05g27452 Brassica carinata HOM05D002370 ORTHO05D003878 1.4e-20 102.4 59 81.4
A05p20360 Brassica napus HOM05D002370 ORTHO05D003878 1.4e-20 102.4 59 81.4
C05p34110 Brassica napus HOM05D002370 ORTHO05D003878 1.4e-20 102.4 59 81.4
BolC5t32146H Brassica oleracea HOM05D002370 ORTHO05D003878 1.4e-20 102.4 59 81.4
BraA05t20943Z Brassica rapa HOM05D002370 ORTHO05D003878 1.4e-20 102.4 59 81.4
CARHR040140 Cardamine hirsuta HOM05D002370 ORTHO05D003878 1.4e-20 102.4 59 81.4
Thhalv10011174m.g Eutrema salsugineum HOM05D002370 ORTHO05D003878 1.4e-20 102.4 59 81.4
Ah.01g024560 Amaranthus hybridus HOM05D002370 ORTHO05D003878 1.8e-20 102.1 59 81.4
EL10Ac9g22169 Beta vulgaris HOM05D002370 ORTHO05D003878 1.8e-20 102.1 59 79.7
Eucgr.I02503 Eucalyptus grandis HOM05D002370 ORTHO05D003878 1.8e-20 102.1 59 81.4
TPR.G8287 Trifolium pratense HOM05D002370 ORTHO05D003878 1.8e-20 102.1 59 79.7
Carub.0001s3921 Capsella rubella HOM05D002370 ORTHO05D003878 2.3e-20 101.7 59 81.4
CDE06G2553 Ceratophyllum demersum HOM05D002370 ORTHO05D003878 2.3e-20 101.7 59 76.3
Lalb_Chr16g0376321 Lupinus albus HOM05D002370 ORTHO05D003878 2.3e-20 101.7 55 87.3
ATR0753G079 Amborella trichopoda HOM05D002370 ORTHO05D003878 3.0e-20 101.3 57 82.5
AT1G50030 Arabidopsis thaliana HOM05D002370 ORTHO05D003878 3.0e-20 101.3 59 79.7
AUR62027030 Chenopodium quinoa HOM05D002370 ORTHO05D003878 3.0e-20 101.3 59 79.7
AL1G57600 Arabidopsis lyrata HOM05D002370 ORTHO05D003878 5.2e-20 100.5 59 79.7
Ca_24363_v3 Cicer arietinum L. HOM05D002370 ORTHO05D003878 6.8e-20 100.1 59 78.0
Medtr5g005380 Medicago truncatula HOM05D002370 ORTHO05D003878 6.8e-20 100.1 59 79.7
Sp1g36890 Schrenkiella parvula HOM05D002370 ORTHO05D003878 1.2e-19 99.4 59 78.0
Os05g0235300 Oryza sativa ssp. japonica HOM05D002370 ORTHO05D003878 1.5e-19 99.0 59 78.0
Psat4g229000 Pisum sativum HOM05D002370 ORTHO05D003878 2.0e-19 98.6 59 76.3
AUR62030874 Chenopodium quinoa HOM05D002370 ORTHO05D003878 3.4e-19 97.8 59 78.0
BcaB07g33455 Brassica carinata HOM05D002370 ORTHO05D003878 4.4e-19 97.4 59 76.3
BcaC08g43183 Brassica carinata HOM05D002370 ORTHO05D003878 4.4e-19 97.4 59 76.3
A06p03390 Brassica napus HOM05D002370 ORTHO05D003878 4.4e-19 97.4 59 76.3
C06p04900 Brassica napus HOM05D002370 ORTHO05D003878 4.4e-19 97.4 59 76.3
BolC6t35612H Brassica oleracea HOM05D002370 ORTHO05D003878 4.4e-19 97.4 59 76.3
BraA06t23548Z Brassica rapa HOM05D002370 ORTHO05D003878 4.4e-19 97.4 59 76.3
Lsat_1_v5_gn_3_135700 Lactuca sativa HOM05D002370 ORTHO05D016147 9.7e-19 96.3 56 78.6
Lsat_1_v5_gn_4_79581 Lactuca sativa HOM05D002370 ORTHO05D016147 9.7e-19 96.3 60 73.3
Zm00001eb285840 Zea mays HOM05D002370 ORTHO05D003878 1.7e-18 95.5 59 74.6
THA.LOC104826500 Tarenaya hassleriana HOM05D002370 ORTHO05D003878 2.2e-18 95.1 59 72.9
CANSAT56G3908 Cannabis sativa HOM05D002370 ORTHO05D003878 4.8e-18 94.0 51 88.2
Eucgr.C04378 Eucalyptus grandis HOM05D002370 ORTHO05D003878 8.3e-18 93.2 59 72.9
Lj1g0008728 Lotus japonicus HOM05D002370 ORTHO05D003878 3.1e-17 91.3 60 71.7
EL10Ac5g12235 Beta vulgaris HOM05D002370 ORTHO05D003878 4.1e-17 90.9 52 78.8
SHI03324 Sapria himalayana HOM05D002370 ORTHO05D003878 2.0e-16 88.6 60 66.7
Nn1g06850 Nelumbo nucifera HOM05D000013 ORTHO05D279905 4.0e-12 74.3 69 56.5
Mapoly0047s0119 Marchantia polymorpha HOM05D002370 ORTHO05D003878 1.7e-10 68.9 60 55.0
SMO147G0225 Selaginella moellendorffii HOM05D002370 ORTHO05D003878 3.1e-09 64.7 59 54.2
AagrBONN_evm.TU.Sc2ySwM_228.5412 Anthoceros agrestis HOM05D002370 ORTHO05D003878 1.6e-08 62.4 60 48.3
Pp3c6_4910 Physcomitrium patens HOM05D002370 ORTHO05D003878 1.6e-08 62.4 58 48.3


User provided reference genes

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