Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.6e-98 362.1 189 100.0
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.0e-82 309.3 163 98.2
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.0e-82 309.3 163 98.2
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.9e-81 305.4 166 95.8
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 6.1e-71 271.2 162 82.1
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 8.9e-70 267.3 163 83.4
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.2e-69 266.9 162 80.9
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 2.2e-68 262.7 162 81.5
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 8.3e-68 260.8 162 80.9
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 1.1e-67 260.4 163 79.8
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 2.4e-67 259.2 162 79.0
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 2.7e-66 255.8 161 78.9
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 1.3e-65 253.4 162 77.2
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 1.7e-65 253.1 161 77.6
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.3e-65 252.7 163 77.9
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 1.1e-64 250.4 163 76.1
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.5e-64 250.0 163 76.7
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.5e-64 250.0 163 76.7
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 1.9e-64 249.6 163 76.1
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 3.3e-64 248.8 163 75.5
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 1.2e-63 246.9 162 77.2
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 1.2e-63 246.9 160 74.4
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.6e-63 245.4 164 75.6
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 4.7e-63 245.0 157 75.8
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 1.1e-62 243.8 158 76.6
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 5.2e-62 241.5 158 74.7
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 5.2e-62 241.5 162 73.5
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 5.2e-62 241.5 162 73.5
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 6.8e-62 241.1 165 71.5
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 6.8e-62 241.1 162 72.8
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.5e-61 240.0 164 74.4
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.6e-61 239.2 164 73.8
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 1.7e-60 236.5 163 74.8
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 2.9e-60 235.7 162 71.6
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.9e-60 235.7 166 72.9
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 2.9e-60 235.7 162 71.6
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 6.4e-60 234.6 163 76.7
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 8.3e-60 234.2 162 72.2
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 1.1e-59 233.8 163 71.8
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 1.1e-59 233.8 163 71.8
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 1.4e-59 233.4 162 69.8
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.9e-59 233.0 159 72.3
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 3.2e-59 232.3 162 70.4
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 3.2e-59 232.3 162 70.4
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 5.4e-59 231.5 159 72.3
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 7.0e-59 231.1 159 71.7
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 7.0e-59 231.1 159 71.7
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 9.2e-59 230.7 163 74.2
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 9.2e-59 230.7 163 71.8
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 9.2e-59 230.7 162 69.1
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 9.2e-59 230.7 159 71.1
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 2.1e-58 229.6 162 68.5
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 3.5e-58 228.8 162 70.4
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 4.6e-58 228.4 159 71.7
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 1.0e-57 227.3 162 68.5
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.7e-57 226.5 174 67.2
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 5.1e-57 224.9 158 69.6
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 6.6e-57 224.6 160 68.1
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 8.6e-57 224.2 162 68.5
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 8.6e-57 224.2 162 70.4
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 1.5e-56 223.4 162 70.4
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 4.3e-56 221.9 163 67.5
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 5.6e-56 221.5 164 70.1
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 9.5e-56 220.7 162 68.5
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 2.1e-55 219.5 165 64.8
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 2.1e-55 219.5 162 68.5
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 2.1e-55 219.5 162 66.7
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 2.8e-55 219.2 162 67.3
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 2.8e-55 219.2 162 70.4
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 3.6e-55 218.8 160 68.8
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 3.6e-55 218.8 162 67.3
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 3.6e-55 218.8 160 67.5
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 4.7e-55 218.4 162 66.7
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 4.7e-55 218.4 163 68.1
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 1.1e-54 217.2 159 68.6
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.4e-54 216.9 162 68.5
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 2.3e-54 216.1 162 67.3
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 2.3e-54 216.1 164 64.6
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 2.3e-54 216.1 165 66.1
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 3.1e-54 215.7 160 70.0
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 4.0e-54 215.3 164 67.7
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 5.2e-54 214.9 162 67.3
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 5.2e-54 214.9 160 70.6
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 6.8e-54 214.5 180 65.0
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 8.9e-54 214.2 157 66.2
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 1.2e-53 213.8 163 66.9
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.2e-53 213.8 157 66.2
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 1.5e-53 213.4 160 70.0
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.5e-53 213.4 160 70.0
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 1.5e-53 213.4 160 65.0
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 2.0e-53 213.0 162 69.1
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 2.0e-53 213.0 161 67.1
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 2.0e-53 213.0 162 66.7
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 2.0e-53 213.0 162 66.0
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 3.4e-53 212.2 160 65.0
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 4.4e-53 211.8 159 66.7
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 5.8e-53 211.5 160 69.4
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 7.5e-53 211.1 159 69.2
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 7.5e-53 211.1 162 67.3
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 1.7e-52 209.9 166 65.1
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 2.2e-52 209.5 166 63.9
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.2e-52 209.5 160 68.8
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 3.7e-52 208.8 162 67.3
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 8.3e-52 207.6 162 66.0
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 8.3e-52 207.6 162 64.8
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 1.1e-51 207.2 162 66.0
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 1.1e-51 207.2 176 62.5
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 1.4e-51 206.8 162 66.0
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 1.9e-51 206.5 162 65.4
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 1.9e-51 206.5 162 66.0
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 1.9e-51 206.5 162 62.3
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 3.2e-51 205.7 163 63.2
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 5.4e-51 204.9 167 63.5
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 7.1e-51 204.5 162 63.0
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 9.2e-51 204.1 162 65.4
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 1.2e-50 203.8 165 64.2
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 1.2e-50 203.8 166 60.8
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 1.6e-50 203.4 162 64.8
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 1.6e-50 203.4 162 64.8
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 3.5e-50 202.2 184 58.2
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 3.5e-50 202.2 163 65.0
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 3.5e-50 202.2 160 63.8
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 4.6e-50 201.8 196 55.1
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 4.6e-50 201.8 194 55.7
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 7.8e-50 201.1 163 65.0
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 1.0e-49 200.7 162 63.0
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 1.0e-49 200.7 163 65.0
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 1.0e-49 200.7 163 65.0
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 1.1e-48 197.2 124 83.9
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 2.5e-48 196.1 162 60.5
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 9.5e-48 194.1 162 59.3
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.4e-46 190.3 181 57.5
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 2.6e-45 186.0 163 54.0
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 7.6e-45 184.5 140 63.6
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 1.1e-43 180.6 162 60.5
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.2e-43 178.7 134 72.4
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 9.2e-43 177.6 130 70.0
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.1e-40 170.6 119 70.6
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 2.1e-39 166.4 110 80.0
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 6.2e-39 164.9 110 75.5
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 8.1e-39 164.5 140 57.1
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 1.2e-37 160.6 120 64.2
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 9.9e-37 157.5 88 94.3
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 1.2e-34 150.6 110 70.0
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.3e-33 147.1 107 67.3
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 2.3e-33 146.4 109 72.5
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 2.1e-31 139.8 112 66.1
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 3.8e-28 129.0 160 41.9
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.2e-27 125.9 75 89.3
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 3.2e-27 125.9 141 49.6
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 5.4e-27 125.2 127 46.5
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 5.4e-27 125.2 173 41.0
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 2.1e-26 123.2 114 60.5
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 2.7e-26 122.9 120 53.3
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 3.9e-25 119.0 161 41.0
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.9e-24 116.7 94 66.0
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 2.5e-24 116.3 120 50.8
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 9.6e-24 114.4 161 38.5
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 9.6e-24 114.4 156 39.7
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 1.1e-22 110.9 113 48.7
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 3.4e-21 105.9 160 36.9
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 2.9e-20 102.8 163 34.4
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 7.4e-16 88.2 143 35.7
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 3.0e-09 66.2 64 57.8
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 2.8e-07 59.7 93 37.6


User provided reference genes

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