Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 1.6e-147 526.2 280 100.0
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 2.1e-35 153.7 201 54.2
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 5.6e-28 129.0 204 47.5
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 3.3e-20 103.2 200 44.0
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 2.0e-17 94.0 124 52.4
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 8.4e-16 88.6 68 70.6
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 9.3e-15 85.1 168 39.9
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 2.7e-14 83.6 151 42.4
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 1.7e-13 80.9 208 37.5
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 1.1e-12 78.2 68 61.8
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 1.5e-12 77.8 62 64.5
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.9e-12 77.4 121 42.1
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 5.6e-12 75.9 70 62.9
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 7.3e-12 75.5 68 60.3
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 7.3e-12 75.5 68 60.3
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 7.3e-12 75.5 68 60.3
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 7.3e-12 75.5 68 60.3
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 7.3e-12 75.5 68 60.3
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 7.3e-12 75.5 68 60.3
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 1.3e-11 74.7 55 65.5
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 1.6e-11 74.3 67 56.7
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 1.6e-11 74.3 68 57.4
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 2.1e-11 73.9 55 65.5
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 2.1e-11 73.9 61 62.3
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 2.8e-11 73.6 68 61.8
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 2.8e-11 73.6 68 64.7
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 2.8e-11 73.6 67 59.7
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 2.8e-11 73.6 55 63.6
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 3.6e-11 73.2 60 65.0
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 3.6e-11 73.2 68 57.4
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 3.6e-11 73.2 65 61.5
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 3.6e-11 73.2 68 60.3
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 4.8e-11 72.8 68 61.8
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 6.2e-11 72.4 43 81.4
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 8.1e-11 72.0 70 61.4
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 8.1e-11 72.0 68 58.8
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 1.4e-10 71.2 68 60.3
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 1.4e-10 71.2 68 58.8
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 1.8e-10 70.9 115 42.6
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 2.4e-10 70.5 60 63.3
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.4e-10 70.5 67 61.2
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.4e-10 70.5 67 61.2
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 2.4e-10 70.5 67 61.2
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 2.4e-10 70.5 60 61.7
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 2.4e-10 70.5 65 61.5
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 2.4e-10 70.5 68 60.3
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 2.4e-10 70.5 68 60.3
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 3.1e-10 70.1 68 63.2
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 3.1e-10 70.1 65 58.5
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 3.1e-10 70.1 128 43.8
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 5.3e-10 69.3 125 43.2
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 5.3e-10 69.3 68 60.3
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 5.3e-10 69.3 68 61.8
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 9.0e-10 68.6 55 58.2
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 9.0e-10 68.6 67 55.2
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 9.0e-10 68.6 67 55.2
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 9.0e-10 68.6 59 62.7
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 9.0e-10 68.6 63 57.1
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 9.0e-10 68.6 68 57.4
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 1.2e-09 68.2 68 60.3
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 1.2e-09 68.2 63 60.3
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 1.5e-09 67.8 55 60.0
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 1.5e-09 67.8 55 60.0
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 1.5e-09 67.8 55 60.0
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 1.5e-09 67.8 68 60.3
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 2.0e-09 67.4 68 50.0
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 2.0e-09 67.4 173 36.4
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 2.6e-09 67.0 66 51.5
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 2.6e-09 67.0 66 51.5
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 2.6e-09 67.0 98 44.9
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 3.4e-09 66.6 68 55.9
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 3.4e-09 66.6 70 57.1
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 4.4e-09 66.2 139 39.6
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 4.4e-09 66.2 68 57.4
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 5.8e-09 65.9 120 44.2
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 5.8e-09 65.9 68 58.8
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 5.8e-09 65.9 68 61.8
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 5.8e-09 65.9 68 54.4
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 5.8e-09 65.9 68 54.4
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 1.3e-08 64.7 51 60.8
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 1.3e-08 64.7 65 60.0
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.2e-08 63.9 55 63.6
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 2.2e-08 63.9 67 56.7
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 2.9e-08 63.5 55 63.6
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 3.8e-08 63.2 68 52.9
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 4.9e-08 62.8 60 58.3
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 6.4e-08 62.4 52 65.4
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 8.4e-08 62.0 51 58.8
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 8.4e-08 62.0 136 37.5
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.1e-07 61.6 56 57.1
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 1.1e-07 61.6 41 82.9
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.4e-07 61.2 61 50.8
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 1.9e-07 60.8 68 55.9
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.9e-07 60.8 61 55.7
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 1.9e-07 60.8 68 51.5
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 1.9e-07 60.8 68 51.5
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 4.2e-07 59.7 55 60.0
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 4.2e-07 59.7 68 51.5
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 5.4e-07 59.3 44 63.6
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 7.1e-07 58.9 68 55.9
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 9.3e-07 58.5 41 68.3
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 9.3e-07 58.5 68 54.4
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 1.2e-06 58.2 68 57.4
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 1.2e-06 58.2 60 53.3
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 1.6e-06 57.8 34 76.5
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 2.1e-06 57.4 112 35.7
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 2.1e-06 57.4 65 53.8
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 2.1e-06 57.4 112 35.7
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 2.1e-06 57.4 65 53.8
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 2.1e-06 57.4 40 62.5
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 2.1e-06 57.4 68 52.9
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.6e-06 56.2 68 52.9
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 6.0e-06 55.8 55 56.4
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 6.0e-06 55.8 69 49.3
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 7.9e-06 55.5 65 52.3
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 7.9e-06 55.5 63 54.0


User provided reference genes

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