Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 3.0e-108 395.2 201 100.0
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 4.5e-64 248.4 202 68.3
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 2.3e-63 246.1 192 70.8
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 4.2e-62 241.9 174 70.7
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 4.7e-61 238.4 173 69.4
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 4.7e-61 238.4 207 62.8
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 8.0e-61 237.7 208 63.9
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 1.8e-60 236.5 203 63.5
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 3.0e-60 235.7 214 62.6
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 3.0e-60 235.7 203 63.1
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 6.8e-60 234.6 207 61.8
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 2.0e-59 233.0 193 66.3
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 2.6e-59 232.6 195 64.6
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 2.6e-59 232.6 203 64.5
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 4.4e-59 231.9 174 74.7
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 9.8e-59 230.7 203 62.6
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 6.3e-58 228.0 197 64.0
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 5.4e-57 224.9 208 62.5
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 5.4e-57 224.9 201 64.7
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 2.0e-56 223.0 206 65.0
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 3.5e-56 222.2 202 61.9
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 4.5e-56 221.9 175 67.4
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 5.9e-56 221.5 218 61.9
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.0e-55 220.7 218 61.5
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.3e-55 220.3 218 61.5
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 1.1e-54 217.2 185 67.6
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 1.5e-54 216.9 218 61.0
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.5e-54 216.9 218 61.0
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.5e-54 216.9 218 61.0
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 1.5e-54 216.9 202 58.9
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 1.9e-54 216.5 210 58.1
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.3e-54 215.7 207 59.9
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 4.3e-54 215.3 218 60.6
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 5.6e-54 214.9 207 59.9
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 1.6e-53 213.4 209 59.8
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 2.1e-53 213.0 215 57.7
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 4.7e-53 211.8 207 58.5
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 8.0e-53 211.1 214 59.3
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 1.0e-52 210.7 176 63.6
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.4e-52 210.3 205 58.0
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.8e-52 209.9 213 59.6
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 3.1e-52 209.1 207 58.5
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.0e-52 208.8 209 58.4
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 4.0e-52 208.8 190 61.6
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.2e-52 208.4 209 59.3
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 5.2e-52 208.4 209 58.4
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.4e-51 205.7 208 56.7
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 4.4e-51 205.3 208 57.7
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 7.5e-51 204.5 207 58.9
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 7.5e-51 204.5 217 57.1
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 1.3e-50 203.8 185 62.2
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 1.3e-50 203.8 205 59.5
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 8.3e-50 201.1 208 55.8
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 1.1e-49 200.7 191 62.8
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 1.9e-49 199.9 207 58.0
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 7.0e-49 198.0 203 57.6
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 9.2e-49 197.6 208 55.3
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.7e-48 196.1 182 65.4
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 7.8e-48 194.5 218 53.7
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 1.0e-47 194.1 202 56.9
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 6.6e-47 191.4 179 65.4
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 1.9e-46 189.9 201 56.2
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 2.1e-45 186.4 198 55.1
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 2.1e-45 186.4 185 56.2
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.1e-44 184.1 225 51.6
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 1.1e-44 184.1 209 54.1
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 1.4e-44 183.7 203 56.2
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.8e-44 183.3 199 54.8
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 2.3e-44 183.0 206 54.9
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 6.8e-44 181.4 206 53.4
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 1.5e-43 180.3 199 55.3
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 3.4e-43 179.1 238 50.4
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 9.8e-43 177.6 203 51.7
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 3.7e-42 175.6 182 56.6
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.7e-42 175.6 197 52.8
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.9e-41 173.3 215 50.7
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 1.9e-41 173.3 201 53.2
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 7.0e-41 171.4 202 54.5
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 9.2e-41 171.0 200 54.0
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 1.2e-40 170.6 218 49.5
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.6e-40 170.2 203 51.7
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 1.6e-40 170.2 219 49.8
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.6e-40 170.2 175 56.0
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 6.0e-40 168.3 206 51.5
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 7.8e-40 167.9 187 55.1
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 3.0e-39 166.0 107 74.8
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 3.9e-39 165.6 207 50.2
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 5.1e-39 165.2 211 47.4
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 2.5e-38 162.9 200 50.5
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 5.6e-38 161.8 120 67.5
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 7.3e-38 161.4 214 48.1
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 1.6e-37 160.2 204 49.5
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 4.7e-37 158.7 221 47.5
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 4.7e-37 158.7 220 49.1
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 4.7e-37 158.7 199 49.7
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 6.2e-37 158.3 193 54.4
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 6.2e-37 158.3 224 48.7
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 1.8e-36 156.8 202 49.0
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 1.8e-36 156.8 206 49.0
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 5.2e-36 155.2 203 49.8
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.5e-35 153.7 207 46.9
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 1.5e-35 153.7 211 46.4
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 3.4e-35 152.5 207 48.8
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 3.4e-35 152.5 216 46.3
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 7.5e-35 151.4 214 46.7
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 9.9e-35 151.0 194 47.4
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.7e-34 150.2 207 49.8
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 2.2e-34 149.8 217 45.6
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 2.2e-34 149.8 217 45.6
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 2.9e-34 149.4 218 45.4
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 3.7e-34 149.1 214 45.8
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.7e-34 149.1 192 50.0
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 3.7e-34 149.1 203 48.8
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 3.7e-34 149.1 210 47.6
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 4.9e-34 148.7 208 45.2
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 4.9e-34 148.7 215 45.6
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 6.4e-34 148.3 173 47.4
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 6.4e-34 148.3 122 65.6
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 6.4e-34 148.3 209 47.8
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 1.4e-33 147.1 154 52.6
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 2.4e-33 146.4 205 46.3
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 3.2e-33 146.0 159 53.5
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.2e-33 146.0 154 51.9
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 1.2e-32 144.1 188 49.5
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.2e-32 144.1 197 49.2
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.2e-32 144.1 197 49.2
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 1.6e-32 143.7 194 49.5
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 2.1e-32 143.3 193 49.2
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 3.5e-32 142.5 186 48.4
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 6.0e-32 141.7 177 50.3
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 7.8e-32 141.4 188 47.9
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 1.0e-31 141.0 177 50.3
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 1.7e-31 140.2 178 51.7
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 3.0e-31 139.4 181 49.2
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 3.9e-31 139.0 202 49.0
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 6.6e-31 138.3 146 56.2
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 8.6e-31 137.9 179 46.9
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 1.1e-30 137.5 181 53.0
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.5e-30 137.1 189 49.2
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 4.3e-30 135.6 193 47.2
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 7.3e-30 134.8 187 48.1
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 2.1e-29 133.3 180 47.8
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 2.1e-29 133.3 179 49.7
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 3.6e-29 132.5 201 45.3
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 4.7e-29 132.1 178 47.2
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 6.2e-29 131.7 177 48.6
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 8.1e-29 131.3 170 47.6
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.1e-28 131.0 184 47.8
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.8e-28 130.2 180 45.6
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 2.4e-28 129.8 197 47.7
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 3.1e-28 129.4 201 44.8
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 5.2e-28 128.6 165 49.1
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 6.8e-28 128.3 171 47.4
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.5e-27 127.1 184 46.7
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 1.5e-27 127.1 174 47.1
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 3.4e-27 125.9 140 51.4
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 4.4e-27 125.6 140 50.7
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 2.2e-26 123.2 139 50.4
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 5.4e-25 118.6 195 44.1
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 2.1e-24 116.7 173 44.5
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 6.0e-24 115.2 173 45.7
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.3e-22 109.4 129 53.5
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 9.6e-22 107.8 182 41.8
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.8e-21 106.3 183 43.2
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 4.7e-21 105.5 157 38.9
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 6.2e-21 105.1 157 36.9
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.4e-20 104.0 133 48.9
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 5.3e-20 102.1 110 51.8
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 5.8e-19 98.6 184 42.4
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 7.6e-19 98.2 186 42.5
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 1.3e-18 97.4 184 41.8
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.3e-18 97.4 270 34.1
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 2.2e-18 96.7 184 41.8
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 6.4e-18 95.1 186 41.9
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 8.4e-18 94.7 193 43.0
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 3.2e-17 92.8 198 39.9
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 4.2e-17 92.4 123 43.9
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.1e-17 91.7 105 52.4
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 4.6e-16 89.0 182 40.7
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 8.7e-15 84.7 105 45.7
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 3.1e-12 76.3 157 37.6
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 2.6e-11 73.2 62 62.9
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 4.5e-11 72.4 199 30.7
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 3.9e-07 59.3 80 40.0
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 6.7e-07 58.5 126 35.7


User provided reference genes

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