Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 1.5e-68 262.7 130 100.0
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 5.5e-55 217.6 129 86.0
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 1.5e-31 139.8 130 59.2
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.1e-29 133.7 130 58.5
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 2.3e-29 132.5 130 58.5
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 2.6e-28 129.0 130 56.9
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 1.3e-27 126.7 130 53.8
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 8.3e-27 124.0 130 53.8
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 2.1e-22 109.4 131 48.1
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 3.6e-22 108.6 129 47.3
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 6.2e-22 107.8 130 47.7
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 1.2e-20 103.6 124 51.6
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 1.5e-20 103.2 126 50.0
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 7.6e-20 100.9 122 48.4
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 9.9e-20 100.5 86 59.3
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 2.9e-19 99.0 131 47.3
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 2.9e-19 99.0 125 47.2
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.9e-18 96.3 130 44.6
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 9.2e-18 94.0 131 46.6
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 1.6e-17 93.2 130 46.2
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 2.7e-17 92.4 129 44.2
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 3.5e-17 92.0 121 47.9
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 6.0e-17 91.3 123 44.7
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 7.8e-17 90.9 121 41.3
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 1.0e-16 90.5 133 42.9
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 1.0e-16 90.5 127 40.9
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 1.3e-16 90.1 127 47.2
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 1.7e-16 89.7 131 43.5
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 2.3e-16 89.4 136 44.9
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 2.3e-16 89.4 132 43.9
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 2.3e-16 89.4 149 43.6
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 3.9e-16 88.6 121 41.3
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 6.6e-16 87.8 121 43.0
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 6.6e-16 87.8 121 43.0
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 6.6e-16 87.8 133 45.1
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 8.7e-16 87.4 129 44.2
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 1.1e-15 87.0 120 46.7
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.5e-15 86.7 79 54.4
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 2.5e-15 85.9 72 58.3
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 2.5e-15 85.9 132 43.2
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 2.5e-15 85.9 132 43.2
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 3.3e-15 85.5 122 42.6
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 3.3e-15 85.5 120 45.0
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 4.3e-15 85.1 123 44.7
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 4.3e-15 85.1 138 45.7
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 5.6e-15 84.7 79 53.2
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 7.3e-15 84.3 131 41.2
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 7.3e-15 84.3 111 43.2
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 9.6e-15 84.0 143 43.4
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 1.3e-14 83.6 85 50.6
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 1.6e-14 83.2 135 40.0
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 1.6e-14 83.2 122 45.1
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 2.8e-14 82.4 78 55.1
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 6.2e-14 81.3 130 43.8
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 6.2e-14 81.3 126 46.0
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 6.2e-14 81.3 79 55.7
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 6.2e-14 81.3 76 55.3
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 8.1e-14 80.9 123 45.5
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.1e-13 80.5 129 40.3
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.1e-13 80.5 130 39.2
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.8e-13 79.7 79 51.9
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 2.4e-13 79.3 129 38.8
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 3.1e-13 79.0 134 41.8
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 3.1e-13 79.0 133 44.4
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 6.9e-13 77.8 133 39.8
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 9.0e-13 77.4 134 39.6
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 1.2e-12 77.0 129 42.6
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 1.2e-12 77.0 125 41.6
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 1.5e-12 76.6 85 52.9
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 1.5e-12 76.6 74 55.4
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 2.0e-12 76.3 106 42.5
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 2.0e-12 76.3 125 44.8
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 2.0e-12 76.3 126 39.7
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 2.0e-12 76.3 102 49.0
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.6e-12 75.9 118 43.2
Nn1g04602 Nelumbo nucifera HOM05D004288 ORTHO05D004997 3.4e-12 75.5 132 40.2
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 4.4e-12 75.1 84 52.4
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 5.8e-12 74.7 65 61.5
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 5.8e-12 74.7 73 57.5
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 7.6e-12 74.3 91 45.1
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 1.3e-11 73.6 118 42.4
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.3e-11 73.6 118 42.4
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 1.7e-11 73.2 85 50.6
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 1.7e-11 73.2 120 43.3
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 2.2e-11 72.8 142 40.8
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 3.8e-11 72.0 128 40.6
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 4.9e-11 71.6 118 42.4
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 8.4e-11 70.9 122 41.0
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 8.4e-11 70.9 118 41.5
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 8.4e-11 70.9 128 40.6
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 8.4e-11 70.9 82 52.4
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 8.4e-11 70.9 125 39.2
Migut.N02769 Erythranthe guttata HOM05D004288 ORTHO05D004997 1.4e-10 70.1 61 55.7
Ciclev10029597m.g Citrus clementina HOM05D004288 ORTHO05D004997 1.9e-10 69.7 127 40.9
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 2.4e-10 69.3 70 50.0
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 3.2e-10 68.9 124 38.7
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 3.2e-10 68.9 72 48.6
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 4.2e-10 68.6 133 37.6
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 4.2e-10 68.6 79 50.6
DCAR_008852 Daucus carota HOM05D004288 ORTHO05D004997 7.1e-10 67.8 92 45.7
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 9.3e-10 67.4 121 37.2
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 1.2e-09 67.0 108 38.9
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 1.2e-09 67.0 68 54.4
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 1.2e-09 67.0 128 39.1
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 2.1e-09 66.2 81 46.9
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 2.7e-09 65.9 77 49.4
Nn5g30537 Nelumbo nucifera HOM05D004288 ORTHO05D004997 2.7e-09 65.9 163 30.1
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 4.6e-09 65.1 47 55.3
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 6.0e-09 64.7 83 42.2
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 7.8e-09 64.3 127 40.9
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 7.8e-09 64.3 127 40.9
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 7.8e-09 64.3 123 35.0
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 1.0e-08 63.9 76 43.4
TAR381G1169 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.0e-08 63.9 85 44.7
DCAR_020077 Daucus carota HOM05D004288 ORTHO05D004997 1.3e-08 63.5 47 59.6
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 1.7e-08 63.2 65 43.1
Oeu059079.1 Olea europaea HOM05D004288 ORTHO05D004997 2.3e-08 62.8 131 36.6
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 3.0e-08 62.4 123 33.3
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 3.9e-08 62.0 65 46.2
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 5.1e-08 61.6 122 40.2
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 6.6e-08 61.2 63 50.8
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 8.7e-08 60.8 49 53.1
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 1.1e-07 60.5 43 60.5
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 1.1e-07 60.5 54 61.1
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 1.5e-07 60.1 61 50.8
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 1.5e-07 60.1 64 50.0
Lalb_Chr23g0267451 Lupinus albus HOM05D004288 ORTHO05D004997 1.5e-07 60.1 122 38.5
VMungo0647G1736 Vigna mungo HOM05D004288 ORTHO05D004997 1.5e-07 60.1 72 47.2
VMungo0647G1883 Vigna mungo HOM05D004288 ORTHO05D004997 3.3e-07 58.9 126 37.3
Aqoxy5G00895 Aquilegia oxysepala HOM05D003189 ORTHO05D003449 4.3e-07 58.5 55 50.9
Potri.009G089900 Populus trichocarpa HOM05D004288 ORTHO05D004997 5.6e-07 58.2 130 36.9
Actinidia08253 Actinidia chinensis HOM05D004288 ORTHO05D004997 7.3e-07 57.8 61 54.1
Lalb_Chr11g0062841 Lupinus albus HOM05D004288 ORTHO05D004997 7.3e-07 57.8 121 36.4
ECA246G3669 Erigeron canadensis HOM05D002841 ORTHO05D003158 9.6e-07 57.4 55 54.5
Psat6g016040 Pisum sativum HOM05D004288 ORTHO05D004997 9.6e-07 57.4 122 39.3
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 1.3e-06 57.0 85 38.8
SGA_v2.0_scaffold238G43969 Striga asiatica HOM05D004288 ORTHO05D004997 1.3e-06 57.0 80 42.5
unitig_8.g4880 Utricularia gibba HOM05D004288 ORTHO05D004997 1.3e-06 57.0 71 45.1
AL6G11150 Arabidopsis lyrata HOM05D004288 ORTHO05D004997 1.6e-06 56.6 43 58.1
AUR62024063 Chenopodium quinoa HOM05D004288 ORTHO05D004997 1.6e-06 56.6 68 51.5
BcaC03g13064 Brassica carinata HOM05D004288 ORTHO05D004997 4.8e-06 55.1 55 52.7
C02p00310 Brassica napus HOM05D004288 ORTHO05D004997 4.8e-06 55.1 55 52.7
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 4.8e-06 55.1 51 49.0
Lj3g0011225 Lotus japonicus HOM05D004288 ORTHO05D004997 4.8e-06 55.1 123 35.8
Sp6g40470 Schrenkiella parvula HOM05D004288 ORTHO05D004997 4.8e-06 55.1 36 66.7
BraA02t04704Z Brassica rapa HOM05D004288 ORTHO05D004997 6.2e-06 54.7 55 50.9
HPP92_013399 Vanilla planifolia HOM05D059585 ORTHO05D004997 6.2e-06 54.7 54 48.1
BcaB05g21897 Brassica carinata HOM05D004288 ORTHO05D004997 8.1e-06 54.3 56 50.0
Lj1g0008863 Lotus japonicus HOM05D004288 ORTHO05D004997 8.1e-06 54.3 119 35.3


User provided reference genes

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