Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005176 Camellia sinensis var. sinensis HOM05D005274 ORTHO05D006485 3.1e-72 275.0 138 100.0
CSS0033174 Camellia sinensis var. sinensis HOM05D005274 ORTHO05D006485 4.1e-40 168.3 107 86.0
Dinv33272 Davidia involucrata HOM05D005274 ORTHO05D006485 3.2e-24 115.5 101 64.4
Rhsim08G0038500 Rhododendron simsii HOM05D005274 ORTHO05D006485 1.2e-23 113.6 101 68.3
Hma1.2p1_0474F.1_g160740 Hydrangea macrophylla HOM05D005274 ORTHO05D006485 1.0e-22 110.5 124 55.6
vmacro18391 Vaccinium macrocarpon HOM05D005274 ORTHO05D006485 1.0e-22 110.5 102 65.7
Cc00_g24660 Coffea canephora HOM05D005274 ORTHO05D006485 1.7e-22 109.8 101 60.4
Lj9A368G50 Lonicera japonica HOM05D005274 ORTHO05D006485 2.9e-22 109.0 100 57.0
TAR624G0372 Trochodendron aralioides HOM05D005274 ORTHO05D006485 5.0e-22 108.2 102 59.8
Cc06_g13990 Coffea canephora HOM05D005274 ORTHO05D006485 1.1e-21 107.1 101 59.4
PGSC0003DMG400005779 Solanum tuberosum HOM05D005274 ORTHO05D006485 1.1e-21 107.1 101 56.4
GSVIVG01032972001 Vitis vinifera HOM05D005274 ORTHO05D006485 3.3e-21 105.5 102 55.9
Cpa.g.sc70.54 Carica papaya HOM05D005274 ORTHO05D006485 3.6e-20 102.1 102 54.9
Sabra04G0133600 Salix brachista HOM05D005274 ORTHO05D006485 3.6e-20 102.1 100 58.0
PGSC0003DMG400011003 Solanum tuberosum HOM05D005274 ORTHO05D006485 4.7e-20 101.7 101 55.4
Oeu034171.3 Olea europaea HOM05D005274 ORTHO05D006485 8.0e-20 100.9 101 57.4
Peaxi162Scf00102g01534 Petunia axillaris HOM05D005274 ORTHO05D006485 8.0e-20 100.9 101 54.5
SGA_v2.0_scaffold32G13165 Striga asiatica HOM05D005274 ORTHO05D006485 8.0e-20 100.9 100 56.0
Potri.004G197200 Populus trichocarpa HOM05D005274 ORTHO05D006485 1.8e-19 99.8 100 56.0
Oeu020806.2 Olea europaea HOM05D005274 ORTHO05D006485 2.3e-19 99.4 101 57.4
Solyc08g008040.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 3.1e-19 99.0 101 53.5
Nn8g41301 Nelumbo nucifera HOM05D005274 ORTHO05D006485 6.8e-19 97.8 104 56.7
TAR381G1230 Trochodendron aralioides HOM05D005274 ORTHO05D006485 6.8e-19 97.8 101 57.4
Nitab4.5_0006090g0030 Nicotiana tabacum HOM05D005274 ORTHO05D006485 8.9e-19 97.4 98 54.1
Atru.chr6.2707 Acer truncatum HOM05D005274 ORTHO05D006485 2.0e-18 96.3 102 54.9
Lsat_1_v5_gn_2_86720 Lactuca sativa HOM05D005274 ORTHO05D006485 2.0e-18 96.3 101 55.4
MSTRG.20092 Avicennia marina HOM05D005274 ORTHO05D006485 3.4e-18 95.5 103 55.3
QL02p069234 Quercus lobata HOM05D005274 ORTHO05D006485 4.4e-18 95.1 102 54.9
Cfa007146 Carpinus fangiana HOM05D005274 ORTHO05D006485 9.8e-18 94.0 102 54.9
Nitab4.5_0004836g0020 Nicotiana tabacum HOM05D005274 ORTHO05D006485 9.8e-18 94.0 100 52.0
Prupe.5G024800 Prunus persica HOM05D005274 ORTHO05D006485 1.7e-17 93.2 103 51.5
CiPaw.04G000800 Carya illinoinensis HOM05D005274 ORTHO05D006485 2.2e-17 92.8 102 52.0
Sopen08g003920 Solanum pennellii HOM05D005274 ORTHO05D006485 2.2e-17 92.8 99 53.5
CAN.G792.79 Capsicum annuum HOM05D005274 ORTHO05D006485 3.7e-17 92.0 108 51.9
RcHm_v2.0_Chr6g0267991 Rosa chinensis HOM05D005274 ORTHO05D006485 3.7e-17 92.0 105 49.5
Nn8g40353 Nelumbo nucifera HOM05D005274 ORTHO05D006485 8.3e-17 90.9 100 55.0
FAN24G2993 Fragaria x ananassa HOM05D005274 ORTHO05D006485 1.1e-16 90.5 105 48.6
Nitab4.5_0000568g0280 Nicotiana tabacum HOM05D005274 ORTHO05D006485 1.1e-16 90.5 103 52.4
FAN15G2064 Fragaria x ananassa HOM05D005274 ORTHO05D006485 1.9e-16 89.7 105 48.6
MD09G1264600 Malus domestica HOM05D005274 ORTHO05D006485 1.9e-16 89.7 104 51.0
Ciclev10016162m.g Citrus clementina HOM05D005274 ORTHO05D006485 2.4e-16 89.4 102 52.0
FvH4_2g10500 Fragaria vesca HOM05D005274 ORTHO05D006485 2.4e-16 89.4 105 48.6
FAN27G1266 Fragaria x ananassa HOM05D005274 ORTHO05D006485 3.2e-16 89.0 105 48.6
VMungo1309G1271 Vigna mungo HOM05D005274 ORTHO05D006485 3.2e-16 89.0 105 52.4
Sopen10g034190 Solanum pennellii HOM05D005274 ORTHO05D006485 5.4e-16 88.2 100 51.0
Thecc.04G049000 Theobroma cacao HOM05D005274 ORTHO05D006485 7.0e-16 87.8 100 51.0
Eucgr.I01592 Eucalyptus grandis HOM05D005274 ORTHO05D006485 1.6e-15 86.7 104 50.0
Manes.11G112500 Manihot esculenta HOM05D005274 ORTHO05D006485 1.6e-15 86.7 96 53.1
ATR1136G175 Amborella trichopoda HOM05D005274 ORTHO05D006485 2.0e-15 86.3 100 48.0
HanXRQChr07g0200241 Helianthus annuus HOM05D005274 ORTHO05D006485 3.5e-15 85.5 100 50.0
Glyma.02G271800 Glycine max HOM05D005274 ORTHO05D006485 4.6e-15 85.1 105 47.6
THA.LOC104802536 Tarenaya hassleriana HOM05D005274 ORTHO05D006485 4.6e-15 85.1 106 49.1
Glyma.14G044800 Glycine max HOM05D005274 ORTHO05D006485 7.8e-15 84.3 105 49.5
LjContig00564g0024425 Lotus japonicus HOM05D005274 ORTHO05D006485 7.8e-15 84.3 104 49.0
Duzib187G0989 Durio zibethinus HOM05D005274 ORTHO05D006485 1.3e-14 83.6 101 49.5
Ca_26258_v3 Cicer arietinum L. HOM05D005274 ORTHO05D006485 1.7e-14 83.2 105 48.6
Lalb_Chr10g0096401 Lupinus albus HOM05D005274 ORTHO05D006485 3.9e-14 82.0 101 48.5
Gohir.D11G068400 Gossypium hirsutum HOM05D005274 ORTHO05D006485 6.6e-14 81.3 101 48.5
Medtr2g097630 Medicago truncatula HOM05D005274 ORTHO05D006485 6.6e-14 81.3 105 47.6
arahy.Tifrunner.gnm1.ann1.5GP605 Arachis hypogaea HOM05D005274 ORTHO05D006485 1.1e-13 80.5 101 46.5
arahy.Tifrunner.gnm1.ann1.T7P6Q4 Arachis hypogaea HOM05D005274 ORTHO05D006485 1.5e-13 80.1 101 46.5
ECA238G2078 Erigeron canadensis HOM05D005274 ORTHO05D006485 1.5e-13 80.1 100 47.0
Migut.B00249 Erythranthe guttata HOM05D005274 ORTHO05D006485 1.5e-13 80.1 101 44.6
Medtr5g071380 Medicago truncatula HOM05D005274 ORTHO05D006485 1.5e-13 80.1 105 46.7
Gorai.007G073200 Gossypium raimondii HOM05D005274 ORTHO05D006485 2.5e-13 79.3 101 47.5
MD08G1181300 Malus domestica HOM05D005274 ORTHO05D006485 3.3e-13 79.0 104 47.1
EL10Ac6g13414 Beta vulgaris HOM05D005274 ORTHO05D006485 5.6e-13 78.2 100 43.0
AUR62009346 Chenopodium quinoa HOM05D005274 ORTHO05D006485 5.6e-13 78.2 106 43.4
AUR62017870 Chenopodium quinoa HOM05D005274 ORTHO05D006485 5.6e-13 78.2 101 45.5
DCAR_022112 Daucus carota HOM05D005274 ORTHO05D006485 5.6e-13 78.2 100 47.0
TPR.G27812 Trifolium pratense HOM05D005274 ORTHO05D006485 7.3e-13 77.8 105 44.8
AUR62037816 Chenopodium quinoa HOM05D005274 ORTHO05D006485 9.5e-13 77.4 101 43.6
Psat2g056880 Pisum sativum HOM05D005274 ORTHO05D006485 9.5e-13 77.4 105 44.8
unitig_744.g24245 Utricularia gibba HOM05D005274 ORTHO05D006485 1.6e-12 76.6 101 40.6
PGR142G3427 Punica granatum HOM05D005274 ORTHO05D006485 2.1e-12 76.3 101 47.5
SalBow6G5022 Salvia bowleyana HOM05D005274 ORTHO05D006485 2.1e-12 76.3 100 48.0
Sc14g0002660 Simmondsia chinensis HOM05D005274 ORTHO05D006485 3.6e-12 75.5 98 45.9
SalBow6G6215 Salvia bowleyana HOM05D005274 ORTHO05D006485 4.7e-12 75.1 100 47.0
TWI32G1102 Tripterygium wilfordii HOM05D005274 ORTHO05D006485 8.1e-12 74.3 104 47.1
Sed0000255 Sechium edule HOM05D005274 ORTHO05D006485 1.1e-11 73.9 103 40.8
Ah.10g032810 Amaranthus hybridus HOM05D005274 ORTHO05D006485 1.4e-11 73.6 101 44.6
Gohir.A11G064100 Gossypium hirsutum HOM05D005274 ORTHO05D006485 1.8e-11 73.2 97 45.4
CsaV3_5G024970 Cucumis sativus L. HOM05D005274 ORTHO05D006485 2.3e-11 72.8 100 44.0
COL.COLO4_13388 Corchorus olitorius HOM05D005274 ORTHO05D006485 5.2e-11 71.6 100 46.0
MELO3C005096.2 Cucumis melo HOM05D005274 ORTHO05D006485 1.2e-10 70.5 100 43.0
Phvul.005G158400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 1.5e-10 70.1 105 43.8
ClCG01G008500 Citrullus lanatus HOM05D005274 ORTHO05D006485 4.4e-10 68.6 100 43.0
SEGI_09940 Sequoiadendron giganteum HOM05D005274 ORTHO05D006485 7.5e-10 67.8 111 37.8
SHI33526 Sapria himalayana HOM05D005274 ORTHO05D006485 2.9e-09 65.9 98 45.9
Hund29750 Selenicereus undatus HOM05D005274 ORTHO05D006485 3.7e-09 65.5 70 51.4
Hund29752 Selenicereus undatus HOM05D005274 ORTHO05D006485 3.7e-09 65.5 70 51.4
CANSAT54G1155 Cannabis sativa HOM05D005274 ORTHO05D006485 4.9e-09 65.1 100 40.0
MD16G1246600 Malus domestica HOM05D005274 ORTHO05D006485 4.1e-08 62.0 55 58.2
Potri.009G159400 Populus trichocarpa HOM05D005274 ORTHO05D006485 5.4e-08 61.6 41 75.6
Aa31LG10G6820 Aethionema arabicum HOM05D005274 ORTHO05D006485 1.6e-07 60.1 96 40.6
Zm00001eb319780 Zea mays HOM05D005274 ORTHO05D006485 1.6e-07 60.1 115 37.4
CARHR128660 Cardamine hirsuta HOM05D005274 ORTHO05D006485 2.1e-07 59.7 97 40.2
SHI31386 Sapria himalayana HOM05D005274 ORTHO05D006485 4.6e-07 58.5 97 44.3
Solyc10g084740.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 7.8e-07 57.8 102 40.2
PSO063G1622 Papaver somniferum HOM05D005274 ORTHO05D006485 1.0e-06 57.4 100 42.0
A03p19190 Brassica napus HOM05D005274 ORTHO05D006485 1.3e-06 57.0 97 38.1
BraA03t11174Z Brassica rapa HOM05D005274 ORTHO05D006485 1.3e-06 57.0 97 38.1
PSO017G0788 Papaver somniferum HOM05D005274 ORTHO05D006485 1.3e-06 57.0 100 44.0
Rhsim09G0096800 Rhododendron simsii HOM05D005274 ORTHO05D006485 1.7e-06 56.6 66 59.1
Carub.0004s1624 Capsella rubella HOM05D005274 ORTHO05D006485 2.3e-06 56.2 97 38.1
Sp4g16830 Schrenkiella parvula HOM05D005274 ORTHO05D006485 3.9e-06 55.5 97 38.1
AL4G30540 Arabidopsis lyrata HOM05D005274 ORTHO05D006485 5.1e-06 55.1 97 38.1
AT2G34570 Arabidopsis thaliana HOM05D005274 ORTHO05D006485 5.1e-06 55.1 97 38.1
C03p22390 Brassica napus HOM05D005274 ORTHO05D006485 6.6e-06 54.7 97 36.1


User provided reference genes

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