Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005142 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 7.8e-88 327.0 156 100.0
CSS0013099 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 6.4e-74 280.8 133 99.2
CSS0031219 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 6.4e-74 280.8 133 99.2
CSS0049673 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 6.4e-74 280.8 133 99.2
Actinidia27894 Actinidia chinensis HOM05D001579 ORTHO05D003470 7.3e-70 267.3 133 94.7
Nn1g01939 Nelumbo nucifera HOM05D001579 ORTHO05D003470 5.2e-68 261.2 133 94.0
THA.LOC104824827 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 5.2e-68 261.2 133 92.5
Actinidia00524 Actinidia chinensis HOM05D001579 ORTHO05D003470 2.0e-67 259.2 133 92.5
Ah.02g117280 Amaranthus hybridus HOM05D001579 ORTHO05D003470 2.6e-67 258.8 133 91.7
TAR376G1017 Trochodendron aralioides HOM05D001579 ORTHO05D003470 2.6e-67 258.8 133 92.5
AL7G11270 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 3.4e-67 258.5 133 91.7
Glyma.11G117800 Glycine max HOM05D001579 ORTHO05D003470 4.4e-67 258.1 133 91.0
GSVIVG01031967001 Vitis vinifera HOM05D001579 ORTHO05D003470 4.4e-67 258.1 133 91.7
AT4G39280 Arabidopsis thaliana HOM05D001579 ORTHO05D003470 7.6e-67 257.3 133 91.0
Glyma.12G043200 Glycine max HOM05D001579 ORTHO05D003470 7.6e-67 257.3 133 90.2
TAR628G1064 Trochodendron aralioides HOM05D001579 ORTHO05D003470 7.6e-67 257.3 133 92.5
PGR042G0613 Punica granatum HOM05D001579 ORTHO05D003470 1.3e-66 256.5 133 91.0
CARHR247410 Cardamine hirsuta HOM05D001579 ORTHO05D003470 2.9e-66 255.4 133 89.5
VMungo1127G1806 Vigna mungo HOM05D001579 ORTHO05D003470 2.9e-66 255.4 133 91.0
Sp4g00870 Schrenkiella parvula HOM05D001579 ORTHO05D003470 3.8e-66 255.0 133 90.2
Ca_01102_v3 Cicer arietinum L. HOM05D001579 ORTHO05D003470 4.9e-66 254.6 133 88.0
Hund14641 Selenicereus undatus HOM05D001579 ORTHO05D003470 4.9e-66 254.6 133 91.7
THA.LOC104804143 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 4.9e-66 254.6 133 90.2
Thhalv10007412m.g Eutrema salsugineum HOM05D001579 ORTHO05D003470 6.4e-66 254.2 133 88.7
Psat7g141360 Pisum sativum HOM05D001579 ORTHO05D003470 6.4e-66 254.2 133 88.7
arahy.Tifrunner.gnm1.ann1.D5Q7RU Arachis hypogaea HOM05D001579 ORTHO05D003470 8.4e-66 253.8 133 90.2
Carub.0004s0076 Capsella rubella HOM05D001579 ORTHO05D003470 8.4e-66 253.8 133 89.5
Lalb_Chr01g0002541 Lupinus albus HOM05D001579 ORTHO05D003470 8.4e-66 253.8 133 88.7
EL10Ac3g05071 Beta vulgaris HOM05D001579 ORTHO05D003470 1.1e-65 253.4 133 90.2
Rhsim11G0177200 Rhododendron simsii HOM05D001579 ORTHO05D003470 1.4e-65 253.1 134 91.0
Carub.0007s0120 Capsella rubella HOM05D001579 ORTHO05D003470 1.9e-65 252.7 133 89.5
BcaC07g41119 Brassica carinata HOM05D001579 ORTHO05D003470 2.4e-65 252.3 133 89.5
A09p57990 Brassica napus HOM05D001579 ORTHO05D003470 2.4e-65 252.3 133 89.5
C08p41200 Brassica napus HOM05D001579 ORTHO05D003470 2.4e-65 252.3 133 89.5
BolC8t51687H Brassica oleracea HOM05D001579 ORTHO05D003470 2.4e-65 252.3 133 89.5
BraA09t41189Z Brassica rapa HOM05D001579 ORTHO05D003470 2.4e-65 252.3 133 89.5
CAN.G1412.7 Capsicum annuum HOM05D001579 ORTHO05D003470 2.4e-65 252.3 133 88.7
Cpa.g.sc62.152 Carica papaya HOM05D001579 ORTHO05D003470 2.4e-65 252.3 133 90.2
Lj7A248G12 Lonicera japonica HOM05D001579 ORTHO05D003470 2.4e-65 252.3 133 88.7
Sed0021732 Sechium edule HOM05D001579 ORTHO05D003470 2.4e-65 252.3 133 88.7
AL4G10950 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 3.2e-65 251.9 133 88.7
CAN.G1298.23 Capsicum annuum HOM05D001579 ORTHO05D003470 3.2e-65 251.9 133 88.7
Cc02_g25810 Coffea canephora HOM05D001579 ORTHO05D003470 3.2e-65 251.9 133 89.5
Solyc10g007060.4 Solanum lycopersicum HOM05D001579 ORTHO05D003470 3.2e-65 251.9 133 88.7
Sopen02g035480 Solanum pennellii HOM05D001579 ORTHO05D003470 3.2e-65 251.9 133 88.7
Sopen10g002960 Solanum pennellii HOM05D001579 ORTHO05D003470 3.2e-65 251.9 133 88.7
PGSC0003DMG400004021 Solanum tuberosum HOM05D001579 ORTHO05D003470 3.2e-65 251.9 133 88.7
Lj2C359T3 Lonicera japonica HOM05D001579 ORTHO05D003470 4.2e-65 251.5 133 88.0
Phvul.011G045200 Phaseolus vulgaris HOM05D001579 ORTHO05D003470 4.2e-65 251.5 133 89.5
Sc13g0008990 Simmondsia chinensis HOM05D001579 ORTHO05D003470 4.2e-65 251.5 133 89.5
TPR.G19411 Trifolium pratense HOM05D001579 ORTHO05D003470 4.2e-65 251.5 133 87.2
Lj1g0020223 Lotus japonicus HOM05D001579 ORTHO05D003470 5.4e-65 251.1 133 88.7
TPR.G23438 Trifolium pratense HOM05D001579 ORTHO05D003470 5.4e-65 251.1 133 88.0
BcaB08g35003 Brassica carinata HOM05D001579 ORTHO05D003470 7.1e-65 250.8 133 88.7
Ciclev10028310m.g Citrus clementina HOM05D001579 ORTHO05D003470 7.1e-65 250.8 133 89.5
Lj3g0013700 Lotus japonicus HOM05D001579 ORTHO05D003470 7.1e-65 250.8 133 88.0
MD10G1076200 Malus domestica HOM05D001579 ORTHO05D003470 7.1e-65 250.8 133 88.7
PGSC0003DMG400025010 Solanum tuberosum HOM05D001579 ORTHO05D003470 7.1e-65 250.8 133 88.0
BcaB03g12963 Brassica carinata HOM05D001579 ORTHO05D003470 9.3e-65 250.4 133 88.0
Carub.0005s1088 Capsella rubella HOM05D001579 ORTHO05D003470 9.3e-65 250.4 133 88.7
Duzib052G0487 Durio zibethinus HOM05D001579 ORTHO05D003470 9.3e-65 250.4 133 88.0
Medtr4g070040 Medicago truncatula HOM05D001579 ORTHO05D003470 9.3e-65 250.4 133 87.2
SalBow6G0592 Salvia bowleyana HOM05D001579 ORTHO05D003470 9.3e-65 250.4 133 88.7
SalBow6G1678 Salvia bowleyana HOM05D001579 ORTHO05D003470 9.3e-65 250.4 133 88.7
Solyc02g090860.3 Solanum lycopersicum HOM05D001579 ORTHO05D003470 9.3e-65 250.4 133 88.0
AUR62034190 Chenopodium quinoa HOM05D001579 ORTHO05D003470 1.6e-64 249.6 133 88.7
Glyma.17G231300 Glycine max HOM05D001579 ORTHO05D003470 1.6e-64 249.6 133 88.7
TWI79G0010 Tripterygium wilfordii HOM05D001579 ORTHO05D003470 1.6e-64 249.6 133 88.0
CANSAT80G0427 Cannabis sativa HOM05D001579 ORTHO05D003470 2.1e-64 249.2 133 89.5
CDE06G1318 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 2.1e-64 249.2 133 88.0
MELO3C013873.2 Cucumis melo HOM05D001579 ORTHO05D003470 2.1e-64 249.2 133 87.2
Duzib132G0542 Durio zibethinus HOM05D001579 ORTHO05D003470 2.1e-64 249.2 133 87.2
Nitab4.5_0011688g0020 Nicotiana tabacum HOM05D001579 ORTHO05D003470 2.1e-64 249.2 133 88.7
Prupe.8G096800 Prunus persica HOM05D001579 ORTHO05D003470 2.1e-64 249.2 133 88.0
MSTRG.16808 Avicennia marina HOM05D001579 ORTHO05D003470 2.7e-64 248.8 133 88.7
CsaV3_3G002020 Cucumis sativus L. HOM05D001579 ORTHO05D003470 2.7e-64 248.8 133 87.2
Gohir.A04G130900 Gossypium hirsutum HOM05D001579 ORTHO05D003470 2.7e-64 248.8 133 87.2
Lalb_Chr03g0025681 Lupinus albus HOM05D001579 ORTHO05D003470 2.7e-64 248.8 133 88.0
MD05G1066200 Malus domestica HOM05D001579 ORTHO05D003470 2.7e-64 248.8 133 88.0
AL7G31990 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 3.5e-64 248.4 133 88.7
Cfa005003 Carpinus fangiana HOM05D001579 ORTHO05D003470 4.6e-64 248.1 133 87.2
Thecc.02G085100 Theobroma cacao HOM05D001579 ORTHO05D003470 4.6e-64 248.1 133 86.5
Aa31LG7G14810 Aethionema arabicum HOM05D001579 ORTHO05D003470 6.0e-64 247.7 144 83.3
ATR0051G048 Amborella trichopoda HOM05D001579 ORTHO05D003470 6.0e-64 247.7 133 88.0
Lsat_1_v5_gn_2_67440 Lactuca sativa HOM05D001579 ORTHO05D003470 6.0e-64 247.7 133 87.2
Nitab4.5_0000308g0090 Nicotiana tabacum HOM05D001579 ORTHO05D003470 6.0e-64 247.7 140 84.3
Nitab4.5_0000974g0080 Nicotiana tabacum HOM05D001579 ORTHO05D003470 6.0e-64 247.7 133 88.0
Gohir.D04G167200 Gossypium hirsutum HOM05D001579 ORTHO05D003470 7.8e-64 247.3 133 86.5
Oeu041647.1 Olea europaea HOM05D001579 ORTHO05D003470 7.8e-64 247.3 133 88.0
Migut.B00751 Erythranthe guttata HOM05D001579 ORTHO05D003470 1.0e-63 246.9 133 88.0
vmacro11113 Vaccinium macrocarpon HOM05D001579 ORTHO05D003470 1.3e-63 246.5 160 76.9
ECA240G1027 Erigeron canadensis HOM05D001579 ORTHO05D003470 1.7e-63 246.1 133 85.7
CDE04G1236 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 2.3e-63 245.7 133 86.5
COL.COLO4_25932 Corchorus olitorius HOM05D001579 ORTHO05D003470 2.3e-63 245.7 134 85.1
Peaxi162Scf00016g00732 Petunia axillaris HOM05D001579 ORTHO05D003470 2.3e-63 245.7 133 86.5
BcaB06g27782 Brassica carinata HOM05D001579 ORTHO05D003470 3.0e-63 245.4 133 86.5
QL11p043704 Quercus lobata HOM05D001579 ORTHO05D003470 3.0e-63 245.4 137 85.4
Sabra04G0102800 Salix brachista HOM05D001579 ORTHO05D003470 3.0e-63 245.4 136 86.0
Atru.chr5.3017 Acer truncatum HOM05D001579 ORTHO05D003470 5.1e-63 244.6 133 87.2
Potri.004G155000 Populus trichocarpa HOM05D001579 ORTHO05D003470 5.1e-63 244.6 140 83.6
HanXRQChr14g0437911 Helianthus annuus HOM05D001579 ORTHO05D003470 6.6e-63 244.2 133 85.7
HanXRQChr14g0446281 Helianthus annuus HOM05D001579 ORTHO05D003470 6.6e-63 244.2 133 85.7
FAN15G0032 Fragaria x ananassa HOM05D001579 ORTHO05D003470 8.7e-63 243.8 137 86.1
FAN27G2756 Fragaria x ananassa HOM05D001579 ORTHO05D003470 8.7e-63 243.8 137 86.1
Pp3c2_16770 Physcomitrium patens HOM05D001579 ORTHO05D003470 8.7e-63 243.8 133 85.0
Potri.009G116100 Populus trichocarpa HOM05D001579 ORTHO05D003470 8.7e-63 243.8 140 82.9
CiPaw.05G064600 Carya illinoinensis HOM05D001579 ORTHO05D003470 1.5e-62 243.0 133 85.0
FvH4_3g28200 Fragaria vesca HOM05D001579 ORTHO05D003470 1.5e-62 243.0 137 86.1
FAN11G3917 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.5e-62 243.0 137 86.1
FAN21G0623 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.5e-62 243.0 137 86.1
RcHm_v2.0_Chr6g0264251 Rosa chinensis HOM05D001579 ORTHO05D003470 1.5e-62 243.0 137 85.4
Haze_02385 Corylus avellana HOM05D001579 ORTHO05D003470 1.9e-62 242.7 131 86.3
FvH4_2g08790 Fragaria vesca HOM05D001579 ORTHO05D003470 1.9e-62 242.7 137 85.4
Manes.17G101200 Manihot esculenta HOM05D001579 ORTHO05D003470 1.9e-62 242.7 137 83.9
BcaC02g08772 Brassica carinata HOM05D001579 ORTHO05D003470 2.5e-62 242.3 133 86.5
BolC4t26677H Brassica oleracea HOM05D001579 ORTHO05D003470 2.5e-62 242.3 133 86.5
BraA04t17272Z Brassica rapa HOM05D001579 ORTHO05D003470 2.5e-62 242.3 133 85.7
Eucgr.D00245 Eucalyptus grandis HOM05D001579 ORTHO05D003470 3.3e-62 241.9 134 85.8
CBR_g23301 Chara braunii HOM05D001579 ORTHO05D003470 4.3e-62 241.5 133 85.0
ClCG10G001880 Citrullus lanatus HOM05D001579 ORTHO05D003470 4.3e-62 241.5 137 85.4
FAN16G0460 Fragaria x ananassa HOM05D001579 ORTHO05D003470 4.3e-62 241.5 137 85.4
SMO119G0093 Selaginella moellendorffii HOM05D001579 ORTHO05D003470 4.3e-62 241.5 133 84.2
A04p16340 Brassica napus HOM05D001579 ORTHO05D003470 5.6e-62 241.1 133 85.0
C04p50830 Brassica napus HOM05D001579 ORTHO05D003470 5.6e-62 241.1 133 85.7
PSO447G0328 Papaver somniferum HOM05D001579 ORTHO05D003470 5.6e-62 241.1 133 83.5
PSO478G3633 Papaver somniferum HOM05D001579 ORTHO05D003470 5.6e-62 241.1 133 83.5
Mapoly0012s0145 Marchantia polymorpha HOM05D001579 ORTHO05D003470 1.3e-61 240.0 133 84.2
Gorai.012G155500 Gossypium raimondii HOM05D001579 ORTHO05D003470 1.6e-61 239.6 134 84.3
Zm00001eb255720 Zea mays HOM05D001579 ORTHO05D003470 3.6e-61 238.4 134 82.8
Os10g0400800 Oryza sativa ssp. japonica HOM05D001579 ORTHO05D003470 6.2e-61 237.7 134 82.8
SHI02914 Sapria himalayana HOM05D001579 ORTHO05D003470 6.9e-60 234.2 135 83.0
PRCOL_00000627 Prasinoderma coloniale HOM05D001579 ORTHO05D003470 1.2e-59 233.4 133 81.2
RcHm_v2.0_Chr7g0204471 Rosa chinensis HOM05D001579 ORTHO05D003470 1.5e-59 233.0 136 83.1
unitig_0.g66 Utricularia gibba HOM05D001579 ORTHO05D003470 2.0e-59 232.6 133 80.5
AagrBONN_evm.TU.Sc2ySwM_344.2010 Anthoceros agrestis HOM05D001579 ORTHO05D003470 1.3e-58 229.9 138 79.0
Hma1.2p1_0633F.1_g192550 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 1.3e-58 229.9 133 84.2
Hma1.2p1_1375F.1_g279070 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 1.3e-58 229.9 133 84.2
AUR62034498 Chenopodium quinoa HOM05D001579 ORTHO05D003470 1.7e-58 229.6 121 89.3
Hund11566 Selenicereus undatus HOM05D001579 ORTHO05D003470 6.4e-58 227.6 125 86.4
Rhsim05G0074300 Rhododendron simsii HOM05D001579 ORTHO05D003470 2.4e-57 225.7 133 83.5
Aqoxy7G01384 Aquilegia oxysepala HOM05D001579 ORTHO05D003470 3.2e-57 225.3 134 77.6
SEGI_28257 Sequoiadendron giganteum HOM05D001579 ORTHO05D003470 6.0e-56 221.1 139 75.5
SGA_v2.0_scaffold32G13167 Striga asiatica HOM05D001579 ORTHO05D003470 1.8e-55 219.5 177 65.0
Cre09.g389430 Chlamydomonas reinhardtii HOM05D001579 ORTHO05D003470 5.1e-55 218.0 138 76.1
Hma1.2p1_3239F.1_g334310 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 3.3e-54 215.3 155 71.6
MCO10G005 Micromonas commoda HOM05D001579 ORTHO05D003470 9.6e-54 213.8 133 71.4
Oeu015994.1 Olea europaea HOM05D001579 ORTHO05D003470 2.8e-53 212.2 152 70.4
AUR62003165 Chenopodium quinoa HOM05D001579 ORTHO05D003470 1.8e-52 209.5 114 86.8
FAN24G0111 Fragaria x ananassa HOM05D001579 ORTHO05D003470 7.6e-51 204.1 190 58.4
FAN16G2055 Fragaria x ananassa HOM05D001579 ORTHO05D003470 6.7e-47 191.0 133 72.2
DCAR_006199 Daucus carota HOM05D001579 ORTHO05D003470 5.6e-46 188.0 102 87.3
BcaC08g46253 Brassica carinata HOM05D001579 ORTHO05D003470 2.1e-45 186.0 114 79.8
BcaC08g46255 Brassica carinata HOM05D001579 ORTHO05D003470 2.1e-45 186.0 114 79.8
Nitab4.5_0004172g0030 Nicotiana tabacum HOM05D001579 ORTHO05D003470 8.2e-45 184.1 99 88.9
MBI01_g34891_MAGBIO Magnolia biondii HOM05D001579 ORTHO05D003470 4.0e-44 181.8 101 83.2
FAN20G1104 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.5e-43 179.9 138 67.4
Ah.12g056190 Amaranthus hybridus HOM05D001579 ORTHO05D006780 8.4e-42 174.1 94 88.3
SGA_v2.0_scaffold58G20534 Striga asiatica HOM05D001579 ORTHO05D003470 2.5e-41 172.6 124 69.4
Duzib248G1006 Durio zibethinus HOM05D001579 ORTHO05D003470 4.3e-38 161.8 92 82.6
ATR1101G101 Amborella trichopoda HOM05D001579 ORTHO05D003470 5.9e-35 151.4 85 83.5
Cfa025854 Carpinus fangiana HOM05D001579 ORTHO05D003470 5.0e-34 148.3 164 49.4
AUR62007985 Chenopodium quinoa HOM05D001579 ORTHO05D003470 2.5e-30 136.0 102 68.6
QL11p044403 Quercus lobata HOM05D001579 ORTHO05D003470 9.7e-30 134.0 93 68.8
HPP92_002579 Vanilla planifolia HOM05D001579 ORTHO05D003470 2.7e-24 115.9 68 79.4
RcHm_v2.0_Chr7g0218631 Rosa chinensis HOM05D001579 ORTHO05D003470 4.4e-22 108.6 131 48.9
BcaB03g15109 Brassica carinata HOM05D001579 ORTHO05D003470 6.3e-21 104.8 95 62.1
HanXRQChr03g0085131 Helianthus annuus HOM05D001579 ORTHO05D003470 7.0e-20 101.3 61 80.3
Haze_27501 Corylus avellana HOM05D001579 ORTHO05D003470 1.2e-19 100.5 97 53.6
Solyc02g061620.2 Solanum lycopersicum HOM05D001579 ORTHO05D003470 1.5e-19 100.1 54 87.0
Solyc01g081220.2 Solanum lycopersicum HOM05D001579 ORTHO05D003470 2.0e-19 99.8 54 87.0
vmacro02106 Vaccinium macrocarpon HOM05D001579 ORTHO05D003470 1.0e-18 97.4 61 78.7
CARHR112740 Cardamine hirsuta HOM05D001579 ORTHO05D003470 2.0e-14 83.2 39 94.9
Lj7C253T7 Lonicera japonica HOM05D001579 ORTHO05D003470 3.1e-12 75.9 41 82.9
CARHR112730 Cardamine hirsuta HOM05D001579 ORTHO05D003470 9.1e-12 74.3 41 82.9
CARHR265880 Cardamine hirsuta HOM05D001579 ORTHO05D003470 1.9e-09 66.6 32 90.6
AagrBONN_evm.TU.Sc2ySwM_228.2945 Anthoceros agrestis HOM05D001579 ORTHO05D003470 4.7e-08 62.0 41 68.3
PSO170G0890 Papaver somniferum HOM05D001579 ORTHO05D003470 1.8e-07 60.1 42 66.7


User provided reference genes

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