Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 3.8e-38 161.0 80 100.0
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 8.2e-25 116.7 58 96.6
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 1.3e-22 109.4 57 91.2
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 2.2e-22 108.6 58 86.2
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 2.5e-21 105.1 57 87.7
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 3.2e-21 104.8 58 84.5
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 4.2e-21 104.4 58 82.8
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 4.2e-21 104.4 58 82.8
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 4.2e-21 104.4 58 79.3
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 5.5e-21 104.0 58 84.5
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 5.5e-21 104.0 57 82.5
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 5.5e-21 104.0 57 82.5
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 5.5e-21 104.0 58 84.5
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 1.2e-20 102.8 58 79.3
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 1.2e-20 102.8 58 82.8
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 1.2e-20 102.8 58 82.8
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 1.6e-20 102.4 58 82.8
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 2.1e-20 102.1 58 82.8
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 2.1e-20 102.1 58 81.0
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 2.7e-20 101.7 58 77.6
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 3.6e-20 101.3 58 79.3
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 3.6e-20 101.3 58 79.3
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 3.6e-20 101.3 59 83.1
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 3.6e-20 101.3 58 79.3
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 4.7e-20 100.9 58 81.0
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 6.1e-20 100.5 58 77.6
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 7.9e-20 100.1 58 79.3
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 7.9e-20 100.1 58 79.3
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 1.0e-19 99.8 57 82.5
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 1.0e-19 99.8 57 82.5
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 1.8e-19 99.0 58 74.1
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 1.8e-19 99.0 58 74.1
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 3.9e-19 97.8 58 75.9
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 3.9e-19 97.8 58 75.9
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 3.9e-19 97.8 58 74.1
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 3.9e-19 97.8 58 77.6
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 5.1e-19 97.4 58 77.6
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 5.1e-19 97.4 57 84.2
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 6.7e-19 97.1 57 80.7
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 6.7e-19 97.1 57 80.7
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 6.7e-19 97.1 58 77.6
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 6.7e-19 97.1 61 75.4
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 6.7e-19 97.1 58 75.9
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 8.8e-19 96.7 57 77.2
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 8.8e-19 96.7 57 80.7
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 8.8e-19 96.7 57 80.7
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 8.8e-19 96.7 58 74.1
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 1.5e-18 95.9 57 77.2
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 1.5e-18 95.9 58 77.6
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 2.6e-18 95.1 57 80.7
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 2.6e-18 95.1 61 72.1
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 3.3e-18 94.7 58 77.6
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 3.3e-18 94.7 57 78.9
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 4.4e-18 94.4 58 75.9
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 7.4e-18 93.6 57 73.7
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 7.4e-18 93.6 59 76.3
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 9.7e-18 93.2 58 75.9
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 1.7e-17 92.4 58 72.4
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 1.7e-17 92.4 58 72.4
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.7e-17 92.4 58 72.4
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 1.7e-17 92.4 58 72.4
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 2.2e-17 92.0 58 74.1
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 2.8e-17 91.7 57 73.7
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 2.8e-17 91.7 57 73.7
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 2.8e-17 91.7 58 75.9
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 3.7e-17 91.3 60 73.3
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 3.7e-17 91.3 58 74.1
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 4.8e-17 90.9 58 70.7
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 4.8e-17 90.9 57 73.7
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 4.8e-17 90.9 57 75.4
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 4.8e-17 90.9 61 68.9
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 6.3e-17 90.5 59 71.2
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 6.3e-17 90.5 57 70.2
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 1.1e-16 89.7 58 72.4
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 1.4e-16 89.4 59 71.2
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 3.1e-16 88.2 44 86.4
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 4.1e-16 87.8 57 66.7
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 4.1e-16 87.8 58 70.7
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 7.0e-16 87.0 56 71.4
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 1.2e-15 86.3 58 69.0
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 2.0e-15 85.5 58 69.0
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 2.6e-15 85.1 63 63.5
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 2.6e-15 85.1 56 67.9
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 3.5e-15 84.7 40 97.5
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 5.9e-15 84.0 58 67.2
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 1.3e-14 82.8 56 69.6
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 2.9e-14 81.6 57 73.7
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 2.9e-14 81.6 57 70.2
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 6.5e-14 80.5 58 63.8
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 8.5e-14 80.1 58 67.2
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 1.1e-13 79.7 59 62.7
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 1.9e-13 79.0 58 65.5
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 9.4e-13 76.6 58 65.5
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 2.7e-12 75.1 57 64.9
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 8.0e-12 73.6 58 62.1
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 2.0e-10 68.9 57 64.9
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 2.8e-09 65.1 59 50.8
SEGI_29111 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 9.1e-08 60.1 41 63.4
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 2.0e-07 58.9 34 76.5
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 5.0e-06 54.3 58 39.7


User provided reference genes

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