Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.0e-48 196.4 100 100.0
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.9e-47 192.2 88 100.0
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 3.0e-40 168.3 85 85.9
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 8.6e-40 166.8 88 83.0
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 1.5e-39 166.0 84 86.9
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 1.9e-39 165.6 88 81.8
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 3.3e-39 164.9 78 92.3
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 3.3e-39 164.9 84 85.7
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 3.3e-39 164.9 88 81.8
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 1.6e-38 162.5 82 86.6
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 2.1e-38 162.2 88 83.0
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 2.1e-38 162.2 84 82.1
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 3.6e-38 161.4 84 84.5
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 1.1e-37 159.8 88 80.7
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 1.1e-37 159.8 78 87.2
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 1.4e-37 159.5 79 87.3
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 1.8e-37 159.1 88 79.5
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 2.4e-37 158.7 83 81.9
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 2.4e-37 158.7 81 81.5
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 2.4e-37 158.7 84 82.1
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 3.1e-37 158.3 79 84.8
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 4.0e-37 157.9 86 80.2
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 4.0e-37 157.9 86 82.6
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 6.8e-37 157.1 79 83.5
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 6.8e-37 157.1 79 84.8
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 8.9e-37 156.8 84 81.0
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 8.9e-37 156.8 81 81.5
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 1.2e-36 156.4 83 83.1
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 1.5e-36 156.0 85 78.8
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 1.5e-36 156.0 89 78.7
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 2.0e-36 155.6 78 84.6
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 2.0e-36 155.6 83 80.7
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 2.0e-36 155.6 82 79.3
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 2.0e-36 155.6 82 79.3
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 2.6e-36 155.2 89 78.7
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 3.4e-36 154.8 86 81.4
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 3.4e-36 154.8 86 79.1
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 4.4e-36 154.5 76 85.5
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 4.4e-36 154.5 85 81.2
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 5.8e-36 154.1 75 85.3
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 5.8e-36 154.1 77 85.7
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 5.8e-36 154.1 82 78.0
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 7.6e-36 153.7 80 82.5
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 1.3e-35 152.9 81 81.5
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 1.7e-35 152.5 76 85.5
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 1.7e-35 152.5 82 76.8
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 2.9e-35 151.8 85 81.2
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 6.4e-35 150.6 85 75.3
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 1.1e-34 149.8 85 78.8
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 1.1e-34 149.8 86 76.7
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 1.1e-34 149.8 86 75.6
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 1.1e-34 149.8 87 73.6
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 1.4e-34 149.4 85 77.6
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 1.4e-34 149.4 88 72.7
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 1.4e-34 149.4 83 78.3
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 1.9e-34 149.1 80 81.2
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 3.2e-34 148.3 77 83.1
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 3.2e-34 148.3 85 72.9
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 4.2e-34 147.9 83 78.3
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 4.2e-34 147.9 88 77.3
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 5.4e-34 147.5 77 81.8
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 7.1e-34 147.1 81 79.0
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 7.1e-34 147.1 84 77.4
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 1.2e-33 146.4 80 80.0
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 2.1e-33 145.6 80 77.5
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 3.5e-33 144.8 78 76.9
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 4.6e-33 144.4 83 77.1
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 6.0e-33 144.1 77 77.9
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 6.0e-33 144.1 82 76.8
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 6.0e-33 144.1 89 73.0
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 7.8e-33 143.7 82 76.8
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 1.0e-32 143.3 79 78.5
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 1.0e-32 143.3 83 75.9
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 2.3e-32 142.1 90 72.2
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 3.9e-32 141.4 86 74.4
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 9.6e-31 136.7 90 68.9
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 2.8e-30 135.2 76 75.0
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 2.0e-28 129.0 136 50.7
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 2.1e-25 119.0 138 46.4
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 3.6e-22 108.2 81 63.0
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 1.5e-20 102.8 78 59.0
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 8.4e-19 97.1 194 33.5
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 1.3e-16 89.7 42 88.1
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 1.3e-16 89.7 43 86.0
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 3.3e-15 85.1 41 87.8
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 1.3e-14 83.2 42 83.3
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 2.8e-14 82.0 68 58.8
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 4.8e-14 81.3 48 75.0
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 8.1e-14 80.5 47 72.3
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 7.6e-12 73.9 44 72.7
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 7.6e-12 73.9 44 70.5
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 1.4e-10 69.7 40 70.0
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 5.5e-10 67.8 32 90.6
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 1.2e-09 66.6 79 43.0
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 1.6e-09 66.2 79 43.0
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 2.1e-09 65.9 79 41.8
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 2.7e-09 65.5 79 40.5
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 2.7e-09 65.5 79 41.8
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 2.7e-09 65.5 37 73.0
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 3.5e-09 65.1 79 40.5
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 3.5e-09 65.1 79 40.5
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 3.5e-09 65.1 79 41.8
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 4.6e-09 64.7 79 40.5
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 4.6e-09 64.7 79 40.5
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 4.6e-09 64.7 79 40.5
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 4.6e-09 64.7 81 39.5
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 4.6e-09 64.7 79 40.5
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 4.6e-09 64.7 84 39.3
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 6.0e-09 64.3 79 40.5
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 6.0e-09 64.3 84 39.3
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 6.0e-09 64.3 84 39.3
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 6.0e-09 64.3 86 38.4
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 7.9e-09 63.9 79 39.2
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 7.9e-09 63.9 79 40.5
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 7.9e-09 63.9 86 40.7
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 7.9e-09 63.9 86 40.7
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 7.9e-09 63.9 81 40.7
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 1.3e-08 63.2 79 39.2
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 1.3e-08 63.2 79 39.2
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 1.3e-08 63.2 79 40.5
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 2.3e-08 62.4 86 38.4
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 3.0e-08 62.0 79 38.0
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 3.0e-08 62.0 79 39.2
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 3.0e-08 62.0 79 39.2
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 3.0e-08 62.0 83 38.6
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 3.0e-08 62.0 83 38.6
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 3.0e-08 62.0 83 38.6
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 3.0e-08 62.0 83 38.6
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 3.0e-08 62.0 89 38.2
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 3.0e-08 62.0 79 38.0
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 3.9e-08 61.6 79 39.2
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 3.9e-08 61.6 77 39.0
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 3.9e-08 61.6 83 38.6
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 5.1e-08 61.2 79 38.0
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 5.1e-08 61.2 79 36.7
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 5.1e-08 61.2 79 39.2
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 5.1e-08 61.2 83 38.6
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 5.1e-08 61.2 83 37.3
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 5.1e-08 61.2 86 40.7
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 5.1e-08 61.2 83 38.6
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 6.7e-08 60.8 77 36.4
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 6.7e-08 60.8 85 35.3
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 8.7e-08 60.5 79 38.0
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 8.7e-08 60.5 88 34.1
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 8.7e-08 60.5 79 38.0
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 1.1e-07 60.1 79 38.0
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 1.1e-07 60.1 79 35.4
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.1e-07 60.1 79 38.0
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 1.1e-07 60.1 79 38.0
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 1.1e-07 60.1 89 36.0
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 1.1e-07 60.1 79 38.0
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 1.1e-07 60.1 79 38.0
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.5e-07 59.7 87 35.6
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 1.5e-07 59.7 79 38.0
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 1.9e-07 59.3 95 35.8
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 2.5e-07 58.9 101 33.7
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 2.5e-07 58.9 79 36.7
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 2.5e-07 58.9 77 37.7
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 3.3e-07 58.5 79 36.7
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 3.3e-07 58.5 79 39.2
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 3.3e-07 58.5 83 37.3
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 3.3e-07 58.5 83 37.3
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 5.7e-07 57.8 79 36.7
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 9.6e-07 57.0 79 34.2
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 1.3e-06 56.6 79 34.2
A07p19560 Brassica napus HOM05D007646 ORTHO05D004022 1.6e-06 56.2 102 33.3
C06p17970 Brassica napus HOM05D007646 ORTHO05D004022 1.6e-06 56.2 107 30.8
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 1.6e-06 56.2 79 36.7
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 2.1e-06 55.8 83 34.9
Cre13.g605700 Chlamydomonas reinhardtii HOM05D007646 ORTHO05D004022 6.2e-06 54.3 86 36.0
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 8.2e-06 53.9 83 36.1


User provided reference genes

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